Wall clock time and date at job start Tue Mar 31 2020 15:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47033 * 355.27033 * 3 2 1 5 5 C 1.36889 * 119.99602 * 272.04144 * 4 3 2 6 6 H 1.07992 * 120.00008 * 192.83731 * 5 4 3 7 7 C 1.39042 * 119.99901 * 12.84464 * 5 4 3 8 8 N 1.31367 * 120.00041 * 13.71363 * 7 5 4 9 9 Si 1.86798 * 119.99666 * 193.71593 * 7 5 4 10 10 H 1.48497 * 109.47461 * 89.99757 * 9 7 5 11 11 H 1.48499 * 109.47040 * 209.99950 * 9 7 5 12 12 H 1.48498 * 109.47400 * 329.99737 * 9 7 5 13 13 C 1.34767 * 120.00255 * 92.04554 * 4 3 2 14 14 O 1.21624 * 120.00090 * 184.59823 * 13 4 3 15 15 C 1.47550 * 120.00110 * 4.60147 * 13 4 3 16 16 C 1.39776 * 120.08298 * 308.20267 * 15 13 4 17 17 C 1.37698 * 119.91061 * 180.23012 * 16 15 13 18 18 C 1.39067 * 120.09070 * 359.49400 * 17 16 15 19 19 N 1.39830 * 119.92196 * 180.22986 * 18 17 16 20 20 N 1.40093 * 126.10039 * 144.96213 * 19 18 17 21 21 C 1.30835 * 108.24853 * 179.82097 * 20 19 18 22 22 C 1.50705 * 125.81417 * 180.13932 * 21 20 19 23 23 C 1.39955 * 108.36801 * 0.44416 * 21 20 19 24 24 C 1.35289 * 107.96599 * 359.71064 * 23 21 20 25 25 C 1.50703 * 126.18719 * 179.97438 * 24 23 21 26 26 C 1.39076 * 120.16637 * 0.50773 * 18 17 16 27 27 C 1.37706 * 120.08104 * 359.74665 * 26 18 17 28 28 H 4.40644 * 5.51306 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47018 * 235.27035 * 3 2 1 30 30 H 1.08997 * 109.47007 * 115.26350 * 3 2 1 31 31 H 0.97002 * 119.99977 * 180.02562 * 8 7 5 32 32 H 1.08003 * 120.04137 * 359.94940 * 16 15 13 33 33 H 1.08005 * 119.95227 * 179.71949 * 17 16 15 34 34 H 1.09003 * 109.46661 * 270.35608 * 22 21 20 35 35 H 1.09000 * 109.47015 * 30.35655 * 22 21 20 36 36 H 1.09001 * 109.47088 * 150.35522 * 22 21 20 37 37 H 1.07998 * 126.01569 * 179.70124 * 23 21 20 38 38 H 1.09002 * 109.47215 * 270.02592 * 25 24 23 39 39 H 1.08996 * 109.47129 * 30.03227 * 25 24 23 40 40 H 1.09002 * 109.46658 * 150.03392 * 25 24 23 41 41 H 1.08001 * 119.96405 * 179.76785 * 26 18 17 42 42 H 1.08007 * 120.04146 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3757 0.1139 5 6 3.3235 -1.9350 1.3490 6 1 3.8725 -2.8600 1.4448 7 6 2.8080 -1.3122 2.4802 8 7 1.9228 -0.3498 2.3543 9 14 3.3744 -1.8439 4.1790 10 1 4.5574 -1.0411 4.5803 11 1 2.2767 -1.6303 5.1561 12 1 3.7392 -3.2831 4.1512 13 6 3.3992 -2.0911 -0.9972 14 8 3.7246 -3.2594 -0.9053 15 6 3.2937 -1.4570 -2.3254 16 6 2.1302 -0.7702 -2.6835 17 6 2.0338 -0.1839 -3.9256 18 6 3.0960 -0.2653 -4.8195 19 7 2.9961 0.3355 -6.0782 20 7 4.0387 0.9483 -6.7854 21 6 3.5603 1.3886 -7.9207 22 6 4.3434 2.1100 -8.9872 23 6 2.1958 1.0815 -7.9730 24 6 1.8696 0.4343 -6.8307 25 6 0.5035 -0.0828 -6.4600 26 6 4.2554 -0.9479 -4.4668 27 6 4.3573 -1.5413 -3.2284 28 1 -1.0498 -0.0003 -0.0002 29 1 3.0091 0.5863 0.8446 30 1 3.0091 0.4394 -0.9294 31 1 1.5634 0.0850 3.1434 32 1 1.3062 -0.7034 -1.9885 33 1 1.1333 0.3431 -4.2048 34 1 4.3127 3.1829 -8.7972 35 1 5.3782 1.7678 -8.9723 36 1 3.9057 1.9011 -9.9634 37 1 1.5219 1.3196 -8.7827 38 1 -0.0451 0.6919 -5.9241 39 1 -0.0405 -0.3533 -7.3649 40 1 0.6080 -0.9608 -5.8226 41 1 5.0769 -1.0123 -5.1650 42 1 5.2578 -2.0715 -2.9554 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:57 Heat of formation + Delta-G solvation = 147.425495 kcal Electronic energy + Delta-G solvation = -26296.058193 eV Core-core repulsion = 22631.532369 eV Total energy + Delta-G solvation = -3664.525825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61972 -39.59864 -37.81610 -35.34184 -34.13297 -32.59728 -32.04034 -31.40982 -30.78758 -30.24446 -27.70410 -27.20619 -26.51507 -24.90695 -22.90858 -22.63273 -20.32662 -19.79019 -19.52279 -18.02842 -17.51907 -16.91636 -16.45628 -15.74690 -15.16203 -14.91949 -14.60809 -14.27395 -14.03715 -13.93822 -13.80459 -13.63923 -13.53449 -13.19129 -13.09198 -12.88627 -12.62063 -12.44540 -12.28325 -12.15600 -12.03177 -11.70799 -11.55146 -11.09878 -10.94858 -10.60953 -10.56774 -10.42729 -9.72790 -9.50113 -9.34939 -8.94598 -8.91444 -8.81584 -8.62668 -8.05232 -7.96156 -6.41313 -3.97221 0.86289 1.50084 1.98334 2.36938 2.61791 3.08012 3.18855 3.23442 3.48383 3.75254 3.94129 4.04241 4.11599 4.44481 4.48265 4.76907 4.81946 4.94394 4.98925 5.07647 5.17014 5.29573 5.37704 5.41724 5.43612 5.52671 5.53720 5.57142 5.60770 5.65207 5.74035 5.87103 6.04296 6.14691 6.22763 6.35586 6.38858 6.60649 6.72481 6.78247 6.82319 7.00666 7.24711 7.42925 7.64367 7.88394 8.29722 8.75970 8.99161 9.20388 9.75096 10.53685 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.003016 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.697492 B = 9282.294420 C = 9778.552080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.095 4.095 3 C 0.226 3.774 4 N -0.426 5.426 5 C -0.307 4.307 6 H 0.109 0.891 7 C 0.029 3.971 8 N -0.864 5.864 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.476 3.524 14 O -0.579 6.579 15 C -0.089 4.089 16 C -0.082 4.082 17 C -0.134 4.134 18 C 0.145 3.855 19 N -0.318 5.318 20 N -0.288 5.288 21 C 0.072 3.928 22 C -0.071 4.071 23 C -0.269 4.269 24 C 0.089 3.911 25 C -0.099 4.099 26 C -0.114 4.114 27 C -0.065 4.065 28 H 0.199 0.801 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 6.746 -16.748 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.097 4.097 3 C 0.103 3.897 4 N -0.142 5.142 5 C -0.434 4.434 6 H 0.126 0.874 7 C -0.175 4.175 8 N -0.503 5.503 9 Si 0.758 3.242 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.265 3.735 14 O -0.464 6.464 15 C -0.093 4.093 16 C -0.102 4.102 17 C -0.154 4.154 18 C 0.053 3.947 19 N -0.094 5.094 20 N -0.108 5.108 21 C -0.095 4.095 22 C -0.129 4.129 23 C -0.298 4.298 24 C -0.035 4.035 25 C -0.157 4.157 26 C -0.134 4.134 27 C -0.084 4.084 28 H 0.216 0.784 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.150 0.850 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.955 6.148 -15.701 16.889 hybrid contribution -0.933 0.027 0.484 1.052 sum -1.888 6.175 -15.217 16.530 Atomic orbital electron populations 1.24232 0.95322 1.01801 1.07573 1.22897 0.94106 0.98533 0.94132 1.18522 0.84549 0.85336 1.01262 1.43674 1.54478 1.10698 1.05351 1.19807 1.33079 1.09409 0.81148 0.87368 1.25376 0.95021 0.96711 1.00346 1.69964 1.25448 1.24505 1.30337 0.85827 0.78206 0.79383 0.80774 1.20176 1.20897 1.19290 1.17807 0.86079 0.86510 0.83123 1.90650 1.53860 1.15798 1.86116 1.20397 0.94629 0.97824 0.96434 1.21681 0.98329 0.94725 0.95416 1.20924 0.98497 1.02842 0.93144 1.17505 0.96970 0.97660 0.82557 1.45804 1.06331 1.43518 1.13732 1.77440 1.10733 1.16183 1.06461 1.22431 0.93973 0.98646 0.94419 1.20173 0.99217 0.99204 0.94336 1.21108 0.96143 1.11829 1.00676 1.21368 0.90234 0.99636 0.92233 1.20654 0.89890 1.01816 1.03382 1.20815 0.97123 0.98002 0.97468 1.21098 0.98505 0.97128 0.91710 0.78384 0.86627 0.91871 0.91776 0.83508 0.85103 0.90499 0.90888 0.90426 0.83312 0.89783 0.89570 0.90235 0.85007 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.34 18.82 29.55 0.56 -4.78 16 2 C -0.09 -2.04 8.60 -37.12 -0.32 -2.36 16 3 C 0.23 4.96 4.76 -6.82 -0.03 4.93 16 4 N -0.43 -10.58 2.58 -119.11 -0.31 -10.88 16 5 C -0.31 -8.21 9.43 -15.00 -0.14 -8.35 16 6 H 0.11 3.04 7.30 -52.49 -0.38 2.65 16 7 C 0.03 0.74 5.14 -17.45 -0.09 0.65 16 8 N -0.86 -21.61 8.53 55.50 0.47 -21.13 16 9 Si 0.93 19.98 29.58 -169.99 -5.03 14.95 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.48 11.58 7.14 -12.47 -0.09 11.50 16 14 O -0.58 -16.06 16.69 5.26 0.09 -15.97 16 15 C -0.09 -1.75 4.80 -104.95 -0.50 -2.26 16 16 C -0.08 -1.44 7.65 -39.20 -0.30 -1.74 16 17 C -0.13 -2.01 8.26 -39.47 -0.33 -2.33 16 18 C 0.14 2.26 6.30 -83.59 -0.53 1.73 16 19 N -0.32 -4.76 3.74 -6.83 -0.03 -4.78 16 20 N -0.29 -4.39 12.33 33.69 0.42 -3.97 16 21 C 0.07 0.89 7.21 -82.37 -0.59 0.30 16 22 C -0.07 -0.58 10.44 36.01 0.38 -0.20 16 23 C -0.27 -3.05 10.65 -39.99 -0.43 -3.48 16 24 C 0.09 1.11 6.77 -81.87 -0.55 0.56 16 25 C -0.10 -0.91 8.59 36.01 0.31 -0.60 16 26 C -0.11 -1.81 9.74 -39.46 -0.38 -2.20 16 27 C -0.06 -1.13 9.74 -39.20 -0.38 -1.51 16 28 H 0.20 3.17 7.80 -54.10 -0.42 2.75 16 29 H 0.12 2.67 6.39 -51.93 -0.33 2.34 16 30 H 0.06 1.23 5.84 -51.93 -0.30 0.93 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.15 2.68 4.57 -52.48 -0.24 2.44 16 33 H 0.13 1.65 6.05 -52.48 -0.32 1.33 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.79 6.89 -51.93 -0.36 0.43 16 41 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.14 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -31.76 356.44 -7.29 -39.05 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.85 Total: 7.51 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.43 Total: -10.14 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.56 Total: -40.77 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.09 Total: -15.97 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.76 -7.29 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.476 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds