Wall clock time and date at job start Tue Mar 31 2020 15:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47002 * 197.38513 * 3 2 1 5 5 C 1.37098 * 119.99839 * 270.00163 * 4 3 2 6 6 H 1.08001 * 120.00239 * 140.06213 * 5 4 3 7 7 C 1.38950 * 120.00113 * 320.05728 * 5 4 3 8 8 N 1.31415 * 119.99898 * 163.75013 * 7 5 4 9 9 Si 1.86801 * 119.99805 * 343.75307 * 7 5 4 10 10 H 1.48505 * 109.46917 * 95.35309 * 9 7 5 11 11 H 1.48500 * 109.46835 * 215.35263 * 9 7 5 12 12 H 1.48496 * 109.47108 * 335.35355 * 9 7 5 13 13 C 1.34784 * 120.00274 * 89.99545 * 4 3 2 14 14 O 1.21289 * 119.99383 * 5.45845 * 13 4 3 15 15 C 1.50696 * 119.99911 * 185.45862 * 13 4 3 16 16 N 1.46503 * 109.46732 * 174.54447 * 15 13 4 17 17 C 1.34832 * 125.89317 * 124.71599 * 16 15 13 18 18 C 1.36433 * 107.60970 * 179.89728 * 17 16 15 19 19 C 1.48468 * 126.22430 * 180.13273 * 18 17 16 20 20 C 1.39307 * 120.11672 * 129.99446 * 19 18 17 21 21 C 1.38031 * 119.87957 * 179.70449 * 20 19 18 22 22 C 1.38317 * 120.11563 * 0.57325 * 21 20 19 23 23 C 1.38308 * 120.23948 * 359.72180 * 22 21 20 24 24 C 1.38035 * 120.11874 * 359.97438 * 23 22 21 25 25 C 1.40847 * 107.55369 * 0.36124 * 18 17 16 26 26 C 1.50701 * 125.95312 * 179.79728 * 25 18 17 27 27 N 1.30674 * 108.10061 * 359.77770 * 25 18 17 28 28 H 4.40638 * 5.51346 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47191 * 77.38733 * 3 2 1 30 30 H 1.08997 * 109.46991 * 317.38130 * 3 2 1 31 31 H 0.96997 * 119.99538 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47263 * 54.54168 * 15 13 4 33 33 H 1.08999 * 109.47250 * 294.53967 * 15 13 4 34 34 H 1.08004 * 126.19440 * 0.03099 * 17 16 15 35 35 H 1.08000 * 120.05716 * 359.97345 * 20 19 18 36 36 H 1.07994 * 119.93920 * 180.29685 * 21 20 19 37 37 H 1.08001 * 119.87806 * 179.70272 * 22 21 20 38 38 H 1.07998 * 119.94322 * 180.02562 * 23 22 21 39 39 H 1.07991 * 120.05879 * 180.02562 * 24 23 22 40 40 H 1.09010 * 109.46963 * 270.00084 * 26 25 18 41 41 H 1.08997 * 109.46969 * 29.99658 * 26 25 18 42 42 H 1.08994 * 109.47409 * 150.00132 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3190 0.4127 5 6 3.3617 2.2906 -0.5273 6 1 3.0922 3.3158 -0.3206 7 6 3.9397 1.9564 -1.7459 8 7 3.8712 2.7930 -2.7570 9 14 4.8140 0.3179 -1.9468 10 1 3.8765 -0.6751 -2.5303 11 1 5.9809 0.4869 -2.8495 12 1 5.2794 -0.1607 -0.6204 13 6 3.3582 1.5768 1.7165 14 8 3.2519 0.6898 2.5369 15 6 3.7411 2.9668 2.1546 16 7 3.8009 3.0185 3.6175 17 6 4.8593 3.4170 4.3518 18 6 4.5094 3.3197 5.6669 19 6 5.3673 3.6582 6.8304 20 6 4.8817 4.4871 7.8392 21 6 5.6813 4.7937 8.9217 22 6 6.9667 4.2890 9.0001 23 6 7.4559 3.4705 7.9983 24 6 6.6626 3.1526 6.9144 25 6 3.1881 2.8347 5.7201 26 6 2.3934 2.5676 6.9724 27 7 2.7711 2.6570 4.4945 28 1 -1.0502 -0.0004 -0.0003 29 1 3.0095 -0.2236 -1.0028 30 1 3.0097 -0.7554 0.6958 31 1 4.2744 2.5595 -3.6078 32 1 2.9976 3.6786 1.7960 33 1 4.7171 3.2220 1.7419 34 1 5.8109 3.7543 3.9683 35 1 3.8798 4.8856 7.7765 36 1 5.3041 5.4323 9.7067 37 1 7.5907 4.5353 9.8465 38 1 8.4602 3.0788 8.0645 39 1 7.0454 2.5131 6.1329 40 1 2.5566 1.5388 7.2938 41 1 2.7155 3.2495 7.7594 42 1 1.3336 2.7211 6.7699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490996490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:18 Heat of formation + Delta-G solvation = 140.031534 kcal Electronic energy + Delta-G solvation = -25888.790971 eV Core-core repulsion = 22223.944520 eV Total energy + Delta-G solvation = -3664.846451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.04913 -39.09871 -38.67193 -35.43851 -33.75107 -32.75762 -31.92256 -31.78187 -30.92744 -29.85517 -28.33413 -27.28166 -25.59178 -24.56115 -22.63265 -22.35048 -20.35281 -19.81718 -19.08040 -18.54709 -17.31913 -16.77560 -16.47904 -16.02105 -15.50740 -15.13675 -14.87319 -14.68338 -14.51403 -13.82447 -13.80769 -13.57290 -13.36671 -13.24666 -12.98104 -12.90938 -12.85773 -12.41487 -12.39366 -11.94562 -11.89685 -11.64654 -11.25549 -11.13986 -11.03674 -10.88122 -10.33934 -10.19737 -9.90659 -9.60521 -9.36558 -9.14529 -9.08157 -8.93271 -8.66645 -8.12197 -7.77981 -6.66075 -4.35708 1.25074 1.41045 2.23596 2.73775 2.89930 2.99567 3.06659 3.11987 3.18528 3.45901 3.49401 3.85873 3.93778 4.31197 4.71287 4.77615 4.92778 4.94287 5.00607 5.03288 5.09190 5.20655 5.32990 5.49961 5.53329 5.57453 5.63096 5.72858 5.76616 5.88620 5.91655 5.98212 6.02713 6.11622 6.12246 6.27103 6.43885 6.46931 6.50022 6.68640 6.92833 7.02983 7.10444 7.25547 7.82904 7.98085 8.08939 8.20401 8.69956 9.05530 9.38651 10.43655 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.003043 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.152418 B = 9197.951587 C =10004.578642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.168 4.168 3 C 0.204 3.796 4 N -0.461 5.461 5 C -0.358 4.358 6 H 0.107 0.893 7 C 0.071 3.929 8 N -0.855 5.855 9 Si 0.875 3.125 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.258 1.258 13 C 0.480 3.520 14 O -0.564 6.564 15 C 0.132 3.868 16 N -0.343 5.343 17 C 0.076 3.924 18 C -0.219 4.219 19 C 0.018 3.982 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.118 4.118 24 C -0.117 4.117 25 C 0.075 3.925 26 C -0.071 4.071 27 N -0.261 5.261 28 H 0.213 0.787 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.278 0.722 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.173 0.827 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 2.940 15.851 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.169 4.169 3 C 0.083 3.917 4 N -0.183 5.183 5 C -0.485 4.485 6 H 0.124 0.876 7 C -0.137 4.137 8 N -0.489 5.489 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.267 3.733 14 O -0.446 6.446 15 C 0.008 3.992 16 N -0.122 5.122 17 C -0.072 4.072 18 C -0.231 4.231 19 C 0.017 3.983 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.152 4.152 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.093 4.093 26 C -0.129 4.129 27 N -0.082 5.082 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.190 0.810 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.173 2.179 15.094 15.577 hybrid contribution 0.961 -0.447 -0.266 1.093 sum 4.134 1.732 14.828 15.490 Atomic orbital electron populations 1.24675 0.95635 1.01016 1.02665 1.23638 0.94828 0.99630 0.98847 1.18631 0.84014 0.88436 1.00664 1.43595 1.57495 1.11751 1.05462 1.19111 1.42487 0.90663 0.96193 0.87599 1.25348 0.95287 0.98029 0.95074 1.69700 1.40459 1.37007 1.01711 0.86948 0.79907 0.83499 0.79445 1.19739 1.20931 1.18179 1.20210 0.80392 0.89663 0.83005 1.90648 1.55000 1.46529 1.52388 1.21482 1.06044 0.98199 0.73498 1.48113 1.09696 1.48267 1.06117 1.22494 0.93561 1.00169 0.90996 1.18579 0.95806 1.17020 0.91709 1.18074 0.92465 0.95197 0.92599 1.21214 0.99982 0.98158 0.94028 1.21046 0.94388 1.00214 0.98042 1.21094 0.96055 0.98986 0.99087 1.21054 0.99608 0.98536 0.94381 1.21272 0.93750 1.00053 0.98424 1.22314 0.93489 0.99452 0.94043 1.20171 0.98826 1.02348 0.91598 1.77351 1.11681 1.20428 0.98744 0.77011 0.89646 0.88632 0.91107 0.87096 0.85553 0.80951 0.86026 0.86326 0.86554 0.86330 0.86129 0.90830 0.90698 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.23 19.25 29.55 0.57 -3.66 16 2 C -0.17 -3.68 13.67 -37.12 -0.51 -4.19 16 3 C 0.20 4.59 4.64 -6.83 -0.03 4.56 16 4 N -0.46 -10.78 2.12 -117.94 -0.25 -11.03 16 5 C -0.36 -8.74 9.13 -14.93 -0.14 -8.88 16 6 H 0.11 2.65 7.16 -52.49 -0.38 2.27 16 7 C 0.07 1.78 5.39 -17.47 -0.09 1.68 16 8 N -0.85 -22.35 13.96 55.50 0.77 -21.57 16 9 Si 0.87 19.19 24.75 -169.99 -4.21 14.98 16 10 H -0.27 -5.78 6.77 56.52 0.38 -5.40 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.26 -5.65 7.05 56.52 0.40 -5.26 16 13 C 0.48 10.90 7.62 -10.98 -0.08 10.82 16 14 O -0.56 -14.29 15.38 5.55 0.09 -14.20 16 15 C 0.13 2.46 5.71 -5.19 -0.03 2.43 16 16 N -0.34 -6.34 3.36 -62.28 -0.21 -6.55 16 17 C 0.08 1.17 11.31 -16.88 -0.19 0.98 16 18 C -0.22 -3.35 5.58 -105.35 -0.59 -3.94 16 19 C 0.02 0.23 5.61 -104.89 -0.59 -0.36 16 20 C -0.12 -1.31 8.56 -39.26 -0.34 -1.64 16 21 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 22 C -0.13 -1.27 10.04 -39.53 -0.40 -1.67 16 23 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 24 C -0.12 -1.39 9.70 -39.26 -0.38 -1.77 16 25 C 0.07 1.24 7.23 -82.10 -0.59 0.65 16 26 C -0.07 -0.91 10.26 36.01 0.37 -0.54 16 27 N -0.26 -5.20 11.72 33.84 0.40 -4.80 16 28 H 0.21 3.04 7.80 -54.08 -0.42 2.62 16 29 H 0.09 1.91 3.12 -51.93 -0.16 1.75 16 30 H 0.10 2.09 7.35 -51.93 -0.38 1.71 16 31 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.11 2.00 7.56 -51.93 -0.39 1.61 16 33 H 0.13 2.03 8.07 -51.93 -0.42 1.61 16 34 H 0.17 2.07 8.06 -52.48 -0.42 1.65 16 35 H 0.12 1.27 7.12 -52.49 -0.37 0.89 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.07 0.79 5.86 -51.93 -0.30 0.48 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -31.71 364.92 -6.67 -38.38 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.95 Total: 7.96 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -3.81 Total: -8.67 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.71 Total: -43.96 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.09 Total: -14.20 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.21 Total: 14.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.71 -6.67 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.413 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds