Wall clock time and date at job start Tue Mar 31 2020 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47382 * 300.81144 * 3 2 1 5 5 C 1.36980 * 119.99505 * 276.36837 * 4 3 2 6 6 H 1.08006 * 119.99657 * 184.48195 * 5 4 3 7 7 C 1.38975 * 120.00612 * 4.49070 * 5 4 3 8 8 N 1.31411 * 119.99586 * 28.96269 * 7 5 4 9 9 Si 1.86799 * 120.00213 * 208.96931 * 7 5 4 10 10 H 1.48498 * 109.47131 * 89.99364 * 9 7 5 11 11 H 1.48500 * 109.47087 * 209.99693 * 9 7 5 12 12 H 1.48505 * 109.46978 * 329.99632 * 9 7 5 13 13 C 1.34770 * 120.00078 * 96.36844 * 4 3 2 14 14 O 1.21636 * 119.99734 * 183.50146 * 13 4 3 15 15 C 1.47334 * 120.00254 * 3.50778 * 13 4 3 16 16 C 1.41366 * 126.41590 * 334.52717 * 15 13 4 17 17 N 1.30475 * 108.07237 * 179.69700 * 16 15 13 18 18 N 1.39930 * 108.92909 * 0.44158 * 17 16 15 19 19 C 1.40151 * 125.76519 * 179.80734 * 18 17 16 20 20 C 1.38868 * 120.06443 * 144.69816 * 19 18 17 21 21 C 1.38097 * 119.93121 * 180.02562 * 20 19 18 22 22 C 1.38307 * 120.06611 * 0.02562 * 21 20 19 23 23 C 1.38259 * 120.13417 * 359.95111 * 22 21 20 24 24 C 1.50700 * 119.96443 * 180.02562 * 23 22 21 25 25 C 1.38139 * 120.07324 * 0.05023 * 23 22 21 26 26 C 1.34561 * 108.46733 * 359.55155 * 18 17 16 27 27 C 1.50697 * 126.32043 * 180.28443 * 26 18 17 28 28 H 4.40643 * 5.51552 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46674 * 180.80767 * 3 2 1 30 30 H 1.08998 * 109.47056 * 60.81480 * 3 2 1 31 31 H 0.97002 * 119.99725 * 180.02562 * 8 7 5 32 32 H 1.07999 * 125.96263 * 359.97438 * 16 15 13 33 33 H 1.07995 * 120.03369 * 359.74262 * 20 19 18 34 34 H 1.07995 * 119.96582 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.93009 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47622 * 270.02877 * 24 23 22 37 37 H 1.09003 * 109.47134 * 30.02833 * 24 23 22 38 38 H 1.09003 * 109.47477 * 150.02266 * 24 23 22 39 39 H 1.07993 * 120.03770 * 179.97438 * 25 23 22 40 40 H 1.08998 * 109.47471 * 89.99554 * 27 26 18 41 41 H 1.09001 * 109.47267 * 210.00035 * 27 26 18 42 42 H 1.09007 * 109.46859 * 329.99388 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7066 1.1862 5 6 3.2386 -0.0471 2.3823 6 1 3.6664 -0.5467 3.2390 7 6 2.7935 1.2647 2.4936 8 7 1.8116 1.6922 1.7320 9 14 3.5910 2.4203 3.7257 10 1 4.7288 3.1232 3.0805 11 1 2.5918 3.4167 4.1885 12 1 4.0863 1.6396 4.8878 13 6 3.4820 -2.0059 1.1007 14 8 3.8270 -2.6102 2.0984 15 6 3.4439 -2.6945 -0.2013 16 6 2.6366 -2.3501 -1.3095 17 7 2.8929 -3.1908 -2.2738 18 7 3.8545 -4.1071 -1.8336 19 6 4.3828 -5.1651 -2.5858 20 6 5.7135 -5.5312 -2.4326 21 6 6.2313 -6.5737 -3.1756 22 6 5.4261 -7.2526 -4.0720 23 6 4.1007 -6.8907 -4.2264 24 6 3.2266 -7.6334 -5.2039 25 6 3.5769 -5.8487 -3.4861 26 6 4.1905 -3.7973 -0.5680 27 6 5.1962 -4.5198 0.2908 28 1 -1.0499 0.0000 0.0004 29 1 3.0088 1.0284 0.0145 30 1 3.0095 -0.5003 -0.8972 31 1 1.5012 2.6079 1.8094 32 1 1.9341 -1.5310 -1.3522 33 1 6.3440 -4.9982 -1.7364 34 1 7.2662 -6.8587 -3.0571 35 1 5.8334 -8.0673 -4.6522 36 1 3.2829 -7.1522 -6.1802 37 1 3.5694 -8.6648 -5.2869 38 1 2.1952 -7.6207 -4.8515 39 1 2.5416 -5.5662 -3.6075 40 1 6.1812 -4.0749 0.1493 41 1 4.9067 -4.4356 1.3383 42 1 5.2282 -5.5715 0.0061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490998614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:51 Heat of formation + Delta-G solvation = 157.101154 kcal Electronic energy + Delta-G solvation = -26467.203004 eV Core-core repulsion = 22803.096747 eV Total energy + Delta-G solvation = -3664.106257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48116 -39.38788 -38.16435 -35.27918 -34.13715 -32.52369 -31.96165 -31.82468 -31.27308 -29.24664 -27.30453 -27.09177 -26.43037 -24.72050 -23.36015 -22.32848 -21.15919 -20.14278 -18.52356 -17.91492 -17.30249 -16.58694 -16.42003 -15.79603 -15.66115 -14.81901 -14.75355 -14.33485 -14.15058 -14.06231 -13.88031 -13.79371 -13.43430 -12.92978 -12.74644 -12.65966 -12.51047 -12.41450 -12.11996 -12.03516 -11.71157 -11.55831 -11.48959 -11.33606 -10.96797 -10.52496 -10.47388 -10.29344 -9.89563 -9.32785 -9.22671 -9.00450 -8.84878 -8.61343 -8.44219 -7.97807 -7.92766 -6.36462 -3.76926 0.80835 1.10159 2.08930 2.50638 2.67717 3.19454 3.26424 3.30898 3.49404 3.80700 4.02632 4.18251 4.29194 4.48772 4.59437 4.76432 4.86181 4.91408 5.01567 5.05737 5.12425 5.20612 5.30954 5.34632 5.40382 5.50345 5.55865 5.67753 5.73873 5.78845 5.87211 5.90701 6.11742 6.13628 6.21928 6.26785 6.31439 6.46204 6.60593 6.75581 6.82477 7.06184 7.32694 7.54675 7.85477 8.04472 8.42668 8.88589 9.12823 9.36097 9.94476 10.59809 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.003164 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.395348 B = 8848.511930 C = 9691.146627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.110 4.110 3 C 0.216 3.784 4 N -0.427 5.427 5 C -0.315 4.315 6 H 0.111 0.889 7 C 0.034 3.966 8 N -0.847 5.847 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.516 3.484 14 O -0.588 6.588 15 C -0.244 4.244 16 C 0.071 3.929 17 N -0.302 5.302 18 N -0.327 5.327 19 C 0.167 3.833 20 C -0.139 4.139 21 C -0.095 4.095 22 C -0.129 4.129 23 C -0.070 4.070 24 C -0.114 4.114 25 C -0.113 4.113 26 C 0.128 3.872 27 C -0.099 4.099 28 H 0.199 0.801 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.269 0.731 32 H 0.204 0.796 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -13.041 -13.068 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.112 4.112 3 C 0.092 3.908 4 N -0.143 5.143 5 C -0.442 4.442 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.484 5.484 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.305 3.695 14 O -0.474 6.474 15 C -0.258 4.258 16 C -0.115 4.115 17 N -0.119 5.119 18 N -0.102 5.102 19 C 0.075 3.925 20 C -0.160 4.160 21 C -0.114 4.114 22 C -0.148 4.148 23 C -0.071 4.071 24 C -0.171 4.171 25 C -0.133 4.133 26 C 0.001 3.999 27 C -0.157 4.157 28 H 0.216 0.784 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.221 0.779 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.151 0.849 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.141 -13.490 -13.798 19.969 hybrid contribution -0.046 1.270 1.368 1.867 sum 5.095 -12.220 -12.429 18.160 Atomic orbital electron populations 1.24221 0.95295 1.04453 1.03299 1.22848 0.94079 0.96890 0.97407 1.18792 0.84615 0.99385 0.87986 1.43580 1.54285 1.07665 1.08817 1.19707 1.39587 0.94642 0.90276 0.87140 1.25252 0.94947 0.98230 0.98698 1.70188 1.20412 1.17531 1.40237 0.86077 0.79154 0.79806 0.80660 1.20292 1.21205 1.19305 1.16744 0.85081 0.81395 0.86240 1.90556 1.54891 1.64903 1.37031 1.20451 1.05568 1.01608 0.98163 1.24918 0.98647 0.97786 0.90195 1.77223 1.08018 1.03212 1.23483 1.45545 1.32461 1.22844 1.09393 1.17464 0.92253 0.87934 0.94806 1.21173 0.92948 0.99744 1.02105 1.20964 0.99977 0.94997 0.95451 1.21086 0.93387 1.00828 0.99463 1.19793 0.94664 0.95562 0.97043 1.20802 0.98960 0.99529 0.97765 1.20892 1.00293 0.95277 0.96866 1.21453 0.97809 0.95667 0.84935 1.20763 0.95767 0.98006 1.01139 0.78435 0.88017 0.90415 0.91993 0.77942 0.84789 0.85057 0.85609 0.90854 0.91280 0.91294 0.84899 0.90171 0.87010 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.32 19.19 29.55 0.57 -4.75 16 2 C -0.11 -2.49 9.16 -37.12 -0.34 -2.83 16 3 C 0.22 4.84 4.79 -6.83 -0.03 4.81 16 4 N -0.43 -10.89 2.60 -119.18 -0.31 -11.20 16 5 C -0.32 -8.60 9.38 -14.98 -0.14 -8.75 16 6 H 0.11 3.18 7.32 -52.48 -0.38 2.79 16 7 C 0.03 0.88 4.86 -17.46 -0.08 0.79 16 8 N -0.85 -21.75 8.96 55.50 0.50 -21.25 16 9 Si 0.92 20.17 29.64 -169.99 -5.04 15.13 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.52 12.89 7.53 -12.56 -0.09 12.79 16 14 O -0.59 -16.03 14.72 5.25 0.08 -15.96 16 15 C -0.24 -5.19 5.71 -105.05 -0.60 -5.79 16 16 C 0.07 1.40 9.58 -16.94 -0.16 1.23 16 17 N -0.30 -5.64 12.25 30.88 0.38 -5.26 16 18 N -0.33 -5.67 3.71 -6.49 -0.02 -5.70 16 19 C 0.17 2.41 6.26 -83.60 -0.52 1.88 16 20 C -0.14 -1.64 8.24 -39.40 -0.32 -1.97 16 21 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 22 C -0.13 -1.14 9.70 -39.55 -0.38 -1.52 16 23 C -0.07 -0.70 5.88 -104.65 -0.62 -1.32 16 24 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 25 C -0.11 -1.45 9.41 -39.40 -0.37 -1.82 16 26 C 0.13 2.37 6.83 -81.44 -0.56 1.81 16 27 C -0.10 -1.51 8.32 36.00 0.30 -1.21 16 28 H 0.20 3.41 7.80 -54.09 -0.42 2.99 16 29 H 0.10 2.37 6.61 -51.93 -0.34 2.03 16 30 H 0.08 1.55 4.27 -51.93 -0.22 1.33 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.20 3.84 4.26 -52.49 -0.22 3.61 16 33 H 0.13 1.48 6.07 -52.49 -0.32 1.17 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 38 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.08 1.07 7.72 -51.93 -0.40 0.67 16 41 H 0.11 1.98 6.39 -51.93 -0.33 1.65 16 42 H 0.07 0.87 6.86 -51.93 -0.36 0.52 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -31.92 352.21 -7.18 -39.10 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.67 Total: 8.21 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.40 Total: -8.38 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.54 Total: -43.41 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.08 Total: -15.96 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.04 Total: 15.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.92 -7.18 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490998614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.200 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds