Wall clock time and date at job start Tue Mar 31 2020 14:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47382 * 300.81144 * 3 2 1 5 5 C 1.36980 * 119.99505 * 276.36837 * 4 3 2 6 6 H 1.08006 * 119.99657 * 184.48195 * 5 4 3 7 7 C 1.38975 * 120.00612 * 4.49070 * 5 4 3 8 8 N 1.31411 * 119.99586 * 28.96269 * 7 5 4 9 9 Si 1.86799 * 120.00213 * 208.96931 * 7 5 4 10 10 H 1.48498 * 109.47131 * 89.99364 * 9 7 5 11 11 H 1.48500 * 109.47087 * 209.99693 * 9 7 5 12 12 H 1.48505 * 109.46978 * 329.99632 * 9 7 5 13 13 C 1.34770 * 120.00078 * 96.36844 * 4 3 2 14 14 O 1.21636 * 119.99734 * 183.50146 * 13 4 3 15 15 C 1.47334 * 120.00254 * 3.50778 * 13 4 3 16 16 C 1.41366 * 126.41590 * 334.52717 * 15 13 4 17 17 N 1.30475 * 108.07237 * 179.69700 * 16 15 13 18 18 N 1.39930 * 108.92909 * 0.44158 * 17 16 15 19 19 C 1.40151 * 125.76519 * 179.80734 * 18 17 16 20 20 C 1.38868 * 120.06443 * 144.69816 * 19 18 17 21 21 C 1.38097 * 119.93121 * 180.02562 * 20 19 18 22 22 C 1.38307 * 120.06611 * 0.02562 * 21 20 19 23 23 C 1.38259 * 120.13417 * 359.95111 * 22 21 20 24 24 C 1.50700 * 119.96443 * 180.02562 * 23 22 21 25 25 C 1.38139 * 120.07324 * 0.05023 * 23 22 21 26 26 C 1.34561 * 108.46733 * 359.55155 * 18 17 16 27 27 C 1.50697 * 126.32043 * 180.28443 * 26 18 17 28 28 H 4.40643 * 5.51552 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46674 * 180.80767 * 3 2 1 30 30 H 1.08998 * 109.47056 * 60.81480 * 3 2 1 31 31 H 0.97002 * 119.99725 * 180.02562 * 8 7 5 32 32 H 1.07999 * 125.96263 * 359.97438 * 16 15 13 33 33 H 1.07995 * 120.03369 * 359.74262 * 20 19 18 34 34 H 1.07995 * 119.96582 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.93009 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47622 * 270.02877 * 24 23 22 37 37 H 1.09003 * 109.47134 * 30.02833 * 24 23 22 38 38 H 1.09003 * 109.47477 * 150.02266 * 24 23 22 39 39 H 1.07993 * 120.03770 * 179.97438 * 25 23 22 40 40 H 1.08998 * 109.47471 * 89.99554 * 27 26 18 41 41 H 1.09001 * 109.47267 * 210.00035 * 27 26 18 42 42 H 1.09007 * 109.46859 * 329.99388 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7066 1.1862 5 6 3.2386 -0.0471 2.3823 6 1 3.6664 -0.5467 3.2390 7 6 2.7935 1.2647 2.4936 8 7 1.8116 1.6922 1.7320 9 14 3.5910 2.4203 3.7257 10 1 4.7288 3.1232 3.0805 11 1 2.5918 3.4167 4.1885 12 1 4.0863 1.6396 4.8878 13 6 3.4820 -2.0059 1.1007 14 8 3.8270 -2.6102 2.0984 15 6 3.4439 -2.6945 -0.2013 16 6 2.6366 -2.3501 -1.3095 17 7 2.8929 -3.1908 -2.2738 18 7 3.8545 -4.1071 -1.8336 19 6 4.3828 -5.1651 -2.5858 20 6 5.7135 -5.5312 -2.4326 21 6 6.2313 -6.5737 -3.1756 22 6 5.4261 -7.2526 -4.0720 23 6 4.1007 -6.8907 -4.2264 24 6 3.2266 -7.6334 -5.2039 25 6 3.5769 -5.8487 -3.4861 26 6 4.1905 -3.7973 -0.5680 27 6 5.1962 -4.5198 0.2908 28 1 -1.0499 0.0000 0.0004 29 1 3.0088 1.0284 0.0145 30 1 3.0095 -0.5003 -0.8972 31 1 1.5012 2.6079 1.8094 32 1 1.9341 -1.5310 -1.3522 33 1 6.3440 -4.9982 -1.7364 34 1 7.2662 -6.8587 -3.0571 35 1 5.8334 -8.0673 -4.6522 36 1 3.2829 -7.1522 -6.1802 37 1 3.5694 -8.6648 -5.2869 38 1 2.1952 -7.6207 -4.8515 39 1 2.5416 -5.5662 -3.6075 40 1 6.1812 -4.0749 0.1493 41 1 4.9067 -4.4356 1.3383 42 1 5.2282 -5.5715 0.0061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490998614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:50 Heat of formation + Delta-G solvation = 139.875862 kcal Electronic energy + Delta-G solvation = -26467.949948 eV Core-core repulsion = 22803.096747 eV Total energy + Delta-G solvation = -3664.853201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.88584 -40.51940 -39.79130 -37.18385 -35.30597 -33.99080 -33.27649 -33.12328 -33.05895 -30.46075 -28.72347 -28.24931 -27.79053 -26.55500 -24.50871 -23.56952 -22.41564 -21.44402 -20.09624 -19.73271 -18.70543 -18.26814 -17.45888 -17.17725 -16.89100 -16.52622 -16.19249 -15.91686 -15.77982 -15.47246 -14.91662 -14.67808 -14.59604 -14.45109 -14.22179 -13.88990 -13.80634 -13.64582 -13.57018 -13.14807 -13.07788 -12.95991 -12.69798 -12.45662 -12.34751 -12.25740 -12.13358 -11.88525 -11.21437 -11.11461 -11.00574 -10.63637 -10.32460 -9.99050 -9.89346 -9.81189 -9.23604 -8.32025 -5.81985 -0.22802 0.28325 0.77215 1.09182 1.22795 1.43579 1.45559 1.55788 2.05608 2.26617 2.40467 2.44202 2.64189 3.01593 3.24904 3.52806 3.56528 3.83703 3.85752 3.90730 3.97111 4.11062 4.19770 4.30506 4.33231 4.35851 4.53363 4.56888 4.60364 4.80301 4.83563 4.84125 4.88900 4.92907 5.08022 5.18343 5.24257 5.34521 5.38893 5.42274 5.49952 5.53743 5.77741 6.04284 6.11825 6.39876 6.47497 7.13997 7.17671 7.41879 8.01277 8.62272 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.003164 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.395348 B = 8848.511930 C = 9691.146627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.148 4.148 3 C 0.223 3.777 4 N -0.439 5.439 5 C -0.356 4.356 6 H 0.082 0.918 7 C 0.008 3.992 8 N -0.856 5.856 9 Si 0.982 3.018 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.511 3.489 14 O -0.624 6.624 15 C -0.284 4.284 16 C 0.070 3.930 17 N -0.309 5.309 18 N -0.314 5.314 19 C 0.121 3.879 20 C -0.143 4.143 21 C -0.088 4.088 22 C -0.115 4.115 23 C -0.071 4.071 24 C -0.114 4.114 25 C -0.128 4.128 26 C 0.140 3.860 27 C -0.093 4.093 28 H 0.232 0.768 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.274 0.726 32 H 0.205 0.795 33 H 0.139 0.861 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -14.785 -15.112 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.150 4.150 3 C 0.100 3.900 4 N -0.155 5.155 5 C -0.483 4.483 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.492 5.492 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.302 3.698 14 O -0.513 6.513 15 C -0.298 4.298 16 C -0.117 4.117 17 N -0.127 5.127 18 N -0.089 5.089 19 C 0.031 3.969 20 C -0.164 4.164 21 C -0.106 4.106 22 C -0.133 4.133 23 C -0.072 4.072 24 C -0.170 4.170 25 C -0.148 4.148 26 C 0.011 3.989 27 C -0.151 4.151 28 H 0.249 0.751 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.221 0.779 33 H 0.157 0.843 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.365 -15.239 -15.903 22.927 hybrid contribution -0.407 1.597 1.841 2.471 sum 5.958 -13.642 -14.062 20.478 Atomic orbital electron populations 1.25074 0.96245 1.02840 1.01678 1.23081 0.94638 0.98370 0.98885 1.18755 0.85052 0.98444 0.87755 1.43719 1.54624 1.08055 1.09106 1.19583 1.41970 0.96019 0.90719 0.89999 1.25938 0.94702 0.98549 1.00520 1.70271 1.20228 1.17824 1.40838 0.85123 0.78457 0.77609 0.78260 1.19193 1.20245 1.20061 1.17273 0.83981 0.81312 0.87257 1.90503 1.56376 1.65760 1.38678 1.20201 1.08570 1.03634 0.97384 1.24803 0.98760 0.98227 0.89867 1.77157 1.08774 1.03445 1.23313 1.45733 1.31282 1.22768 1.09130 1.17929 0.93907 0.88426 0.96598 1.21373 0.91806 1.00529 1.02657 1.21405 1.01612 0.93455 0.94128 1.21580 0.92503 1.00754 0.98496 1.20144 0.95825 0.94553 0.96676 1.20873 0.98334 1.00512 0.97284 1.20953 0.99774 0.96556 0.97545 1.21829 0.97145 0.94487 0.85488 1.20811 0.95782 0.99640 0.98869 0.75097 0.89441 0.88387 0.91565 0.77877 0.84320 0.81543 0.81924 0.89931 0.88976 0.91713 0.86411 0.87912 0.89640 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.00 19.19 74.32 1.43 -8.57 16 2 C -0.15 -6.82 9.16 31.13 0.29 -6.54 16 3 C 0.22 10.43 4.79 84.57 0.41 10.84 16 4 N -0.44 -23.60 2.60 -649.23 -1.69 -25.28 16 5 C -0.36 -20.45 9.38 84.07 0.79 -19.66 16 6 H 0.08 5.05 7.32 -2.91 -0.02 5.03 16 7 C 0.01 0.41 4.86 84.93 0.41 0.82 16 8 N -0.86 -44.52 8.96 21.67 0.19 -44.32 16 9 Si 0.98 42.13 29.64 68.60 2.03 44.16 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 13 C 0.51 27.02 7.53 86.64 0.65 27.67 16 14 O -0.62 -36.24 14.72 -4.14 -0.06 -36.30 16 15 C -0.28 -12.60 5.71 -20.14 -0.12 -12.71 16 16 C 0.07 2.83 9.58 85.66 0.82 3.65 16 17 N -0.31 -11.80 12.25 -56.21 -0.69 -12.49 16 18 N -0.31 -10.97 3.71 -174.44 -0.65 -11.62 16 19 C 0.12 3.38 6.26 38.10 0.24 3.61 16 20 C -0.14 -3.03 8.24 22.39 0.18 -2.84 16 21 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 22 C -0.12 -1.50 9.70 22.29 0.22 -1.29 16 23 C -0.07 -1.23 5.88 -19.88 -0.12 -1.34 16 24 C -0.11 -1.30 10.01 71.24 0.71 -0.58 16 25 C -0.13 -3.17 9.41 22.39 0.21 -2.96 16 26 C 0.14 5.26 6.83 42.11 0.29 5.55 16 27 C -0.09 -2.85 8.32 71.23 0.59 -2.25 16 28 H 0.23 7.59 7.80 -4.42 -0.03 7.55 16 29 H 0.09 4.26 6.61 -2.39 -0.02 4.24 16 30 H 0.10 4.10 4.27 -2.39 -0.01 4.09 16 31 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 32 H 0.21 8.03 4.26 -2.91 -0.01 8.02 16 33 H 0.14 2.73 6.07 -2.91 -0.02 2.71 16 34 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 35 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 38 H 0.06 0.80 8.08 -2.39 -0.02 0.79 16 39 H 0.12 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.10 2.66 7.72 -2.39 -0.02 2.64 16 41 H 0.08 3.14 6.39 -2.39 -0.02 3.13 16 42 H 0.10 2.36 6.86 -2.38 -0.02 2.34 16 Total: -1.00 -73.35 352.21 7.43 -65.92 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.06 Total: 27.57 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 7.23 Total: -7.63 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -2.83 Total: -93.71 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.06 Total: -36.30 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -73.35 7.43 -65.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490998614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.792 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds