Wall clock time and date at job start Tue Mar 31 2020 14:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46969 * 100.52341 * 3 2 1 5 5 C 1.36838 * 120.00163 * 96.35206 * 4 3 2 6 6 H 1.07999 * 120.00186 * 157.63691 * 5 4 3 7 7 C 1.39036 * 119.99989 * 337.63710 * 5 4 3 8 8 N 1.31384 * 119.99760 * 355.26605 * 7 5 4 9 9 Si 1.86789 * 119.99923 * 175.26762 * 7 5 4 10 10 H 1.48503 * 109.47402 * 60.00098 * 9 7 5 11 11 H 1.48503 * 109.46965 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47442 * 299.99776 * 9 7 5 13 13 C 1.34782 * 119.99976 * 276.35344 * 4 3 2 14 14 O 1.21745 * 119.99671 * 183.72204 * 13 4 3 15 15 C 1.46506 * 119.99861 * 3.72055 * 13 4 3 16 16 N 1.38279 * 126.82752 * 108.65328 * 15 13 4 17 17 H 0.96996 * 126.55566 * 0.04400 * 16 15 13 18 18 C 1.35973 * 106.88201 * 180.02562 * 16 15 13 19 19 C 1.47787 * 125.50170 * 179.97438 * 18 16 15 20 20 C 1.39627 * 120.14506 * 0.02562 * 19 18 16 21 21 C 1.37930 * 119.85103 * 179.97438 * 20 19 18 22 22 C 1.38398 * 120.14565 * 359.97438 * 21 20 19 23 23 C 1.38342 * 120.29521 * 359.97438 * 22 21 20 24 24 C 1.50698 * 119.92202 * 180.02562 * 23 22 21 25 25 C 1.37973 * 120.14914 * 359.78647 * 23 22 21 26 26 N 1.31824 * 108.99949 * 0.02562 * 18 16 15 27 27 C 1.32928 * 109.79088 * 359.97438 * 26 18 16 28 28 C 1.50704 * 126.00694 * 180.26347 * 27 26 18 29 29 H 4.40643 * 5.51449 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46833 * 340.52353 * 3 2 1 31 31 H 1.08992 * 109.47197 * 220.52393 * 3 2 1 32 32 H 0.96996 * 119.99826 * 179.97438 * 8 7 5 33 33 H 1.07994 * 120.07579 * 359.97438 * 20 19 18 34 34 H 1.07994 * 119.92697 * 180.02562 * 21 20 19 35 35 H 1.07996 * 119.84781 * 179.97438 * 22 21 20 36 36 H 1.08999 * 109.47167 * 89.99632 * 24 23 22 37 37 H 1.09000 * 109.46967 * 209.99917 * 24 23 22 38 38 H 1.09007 * 109.47209 * 329.99996 * 24 23 22 39 39 H 1.07999 * 120.07363 * 180.26349 * 25 23 22 40 40 H 1.08991 * 109.47397 * 269.68748 * 28 27 26 41 41 H 1.08999 * 109.46508 * 29.69348 * 28 27 26 42 42 H 1.09002 * 109.46724 * 149.68245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2531 -1.3580 5 6 3.4853 1.5211 -1.7342 6 1 4.1620 1.6708 -2.5625 7 6 2.9708 2.6168 -1.0501 8 7 2.0766 2.4397 -0.1039 9 14 3.5509 4.3404 -1.4763 10 1 3.2419 4.6289 -2.8999 11 1 2.8550 5.3253 -0.6098 12 1 5.0167 4.4374 -1.2585 13 6 3.2375 -0.7635 -2.2369 14 8 3.7065 -0.5666 -3.3430 15 6 2.7853 -2.1054 -1.8612 16 7 1.6664 -2.7658 -2.3345 17 1 1.0275 -2.4290 -2.9820 18 6 1.6332 -3.9777 -1.7188 19 6 0.6036 -5.0175 -1.9255 20 6 -0.4487 -4.7951 -2.8159 21 6 -1.4061 -5.7699 -3.0046 22 6 -1.3251 -6.9665 -2.3140 23 6 -0.2846 -7.1937 -1.4310 24 6 -0.2043 -8.4999 -0.6839 25 6 0.6825 -6.2289 -1.2367 26 7 2.6673 -4.0751 -0.9070 27 6 3.3906 -2.9613 -0.9639 28 6 4.6534 -2.6844 -0.1893 29 1 -1.0501 0.0002 0.0001 30 1 3.0097 -0.9681 0.3427 31 1 3.0089 0.7819 0.6677 32 1 1.7180 3.2040 0.3736 33 1 -0.5128 -3.8619 -3.3558 34 1 -2.2202 -5.5994 -3.6933 35 1 -2.0776 -7.7263 -2.4650 36 1 0.3744 -9.2167 -1.2664 37 1 0.2804 -8.3385 0.2790 38 1 -1.2097 -8.8894 -0.5238 39 1 1.4966 -6.4092 -0.5503 40 1 4.4012 -2.2117 0.7598 41 1 5.1767 -3.6217 -0.0008 42 1 5.2956 -2.0196 -0.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491020478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:36 Heat of formation + Delta-G solvation = 91.506835 kcal Electronic energy + Delta-G solvation = -26514.288583 eV Core-core repulsion = 22847.337944 eV Total energy + Delta-G solvation = -3666.950640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.13063 -40.42405 -39.91094 -37.21269 -34.73640 -34.09432 -33.65507 -33.19343 -32.90194 -31.10348 -28.63257 -28.27510 -27.64292 -26.48350 -24.66808 -23.15582 -22.22372 -21.46163 -20.54702 -19.80852 -19.11430 -18.36057 -17.86172 -17.22498 -16.63345 -16.51443 -16.27502 -15.90720 -15.85819 -15.58351 -14.74988 -14.69804 -14.62118 -14.33864 -14.16795 -14.03786 -13.92454 -13.67634 -13.31988 -13.15148 -12.97220 -12.93877 -12.86200 -12.60294 -12.25920 -12.18396 -11.99144 -11.53668 -11.36296 -11.20282 -11.06802 -10.75064 -10.58188 -10.30626 -9.93407 -9.68781 -8.86104 -8.36233 -6.08759 -0.17133 0.42114 0.87926 1.22975 1.41888 1.49012 1.54624 1.90967 2.02540 2.10441 2.28124 2.33675 2.88874 3.00659 3.02889 3.20238 3.72481 3.78734 3.92543 3.97084 4.03485 4.09130 4.20081 4.42091 4.44953 4.57095 4.68954 4.77440 4.84169 4.88983 4.89815 4.93278 4.96278 5.00219 5.10292 5.31347 5.33941 5.37154 5.42263 5.45683 5.60799 5.64991 5.93615 6.00713 6.20511 6.32283 6.81764 6.97754 7.04069 7.22487 7.77462 8.58856 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.003277 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.263136 B = 8541.707165 C = 8852.595061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.142 4.142 3 C 0.231 3.769 4 N -0.418 5.418 5 C -0.350 4.350 6 H 0.083 0.917 7 C 0.006 3.994 8 N -0.874 5.874 9 Si 0.995 3.005 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.263 1.263 13 C 0.508 3.492 14 O -0.621 6.621 15 C -0.046 4.046 16 N -0.532 5.532 17 H 0.426 0.574 18 C 0.253 3.747 19 C -0.030 4.030 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.089 4.089 24 C -0.112 4.112 25 C -0.091 4.091 26 N -0.484 5.484 27 C 0.034 3.966 28 C -0.070 4.070 29 H 0.232 0.768 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.276 0.724 33 H 0.122 0.878 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -16.578 2.006 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.144 4.144 3 C 0.109 3.891 4 N -0.134 5.134 5 C -0.477 4.477 6 H 0.101 0.899 7 C -0.198 4.198 8 N -0.511 5.511 9 Si 0.819 3.181 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.188 1.188 13 C 0.296 3.704 14 O -0.509 6.509 15 C -0.165 4.165 16 N -0.135 5.135 17 H 0.266 0.734 18 C -0.006 4.006 19 C -0.032 4.032 20 C -0.147 4.147 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.089 4.089 24 C -0.169 4.169 25 C -0.111 4.111 26 N -0.204 5.204 27 C -0.101 4.101 28 C -0.128 4.128 29 H 0.249 0.751 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.785 -16.954 2.153 18.780 hybrid contribution -0.294 2.298 -1.180 2.599 sum -8.079 -14.656 0.974 16.764 Atomic orbital electron populations 1.25083 0.96292 1.05617 1.00487 1.23424 0.94951 0.96168 0.99841 1.18550 0.84744 1.00960 0.84838 1.43614 1.53461 1.06450 1.09828 1.19692 1.28060 0.81666 1.18273 0.89872 1.26142 0.94758 1.03245 0.95608 1.70057 1.26063 1.32716 1.22242 0.84962 0.78912 0.76294 0.77982 1.20466 1.19514 1.18776 1.16988 0.85404 0.83624 0.84395 1.90635 1.52006 1.84675 1.23543 1.21023 0.93905 0.96421 1.05164 1.43090 1.21266 1.14093 1.35032 0.73448 1.21660 0.97439 0.86173 0.95375 1.17740 0.92929 0.92076 1.00468 1.21265 0.94575 1.00695 0.98132 1.21326 0.98540 0.93029 0.99910 1.21564 0.98165 0.97682 0.95276 1.20204 0.94178 0.96812 0.97676 1.20853 1.03997 0.92492 0.99532 1.21151 0.99390 0.91637 0.98956 1.69954 1.04960 1.24245 1.21222 1.21484 0.99694 0.89999 0.98886 1.20231 0.90688 1.03172 0.98660 0.75125 0.89981 0.87129 0.91370 0.86040 0.82813 0.82593 0.90081 0.91318 0.89543 0.85365 0.89584 0.88663 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.58 19.25 74.32 1.43 -9.15 16 2 C -0.14 -6.55 11.28 31.13 0.35 -6.20 16 3 C 0.23 10.71 4.89 84.57 0.41 11.13 16 4 N -0.42 -21.71 2.60 -650.13 -1.69 -23.40 16 5 C -0.35 -19.31 9.33 84.10 0.78 -18.52 16 6 H 0.08 4.86 7.35 -2.91 -0.02 4.84 16 7 C 0.01 0.31 5.22 84.95 0.44 0.76 16 8 N -0.87 -44.17 8.85 21.68 0.19 -43.97 16 9 Si 1.00 41.01 29.56 68.60 2.03 43.04 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 C 0.51 26.40 7.07 86.40 0.61 27.01 16 14 O -0.62 -36.76 16.79 -4.49 -0.08 -36.83 16 15 C -0.05 -2.01 5.61 40.22 0.23 -1.78 16 16 N -0.53 -20.19 6.12 -176.45 -1.08 -21.27 16 17 H 0.43 14.54 8.04 -92.71 -0.75 13.80 16 18 C 0.25 8.93 7.74 136.55 1.06 9.99 16 19 C -0.03 -0.86 5.87 -20.09 -0.12 -0.98 16 20 C -0.13 -2.96 9.69 22.53 0.22 -2.75 16 21 C -0.11 -1.92 10.03 22.23 0.22 -1.70 16 22 C -0.11 -1.70 9.69 22.33 0.22 -1.48 16 23 C -0.09 -1.64 5.87 -19.90 -0.12 -1.76 16 24 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 25 C -0.09 -2.28 9.34 22.53 0.21 -2.07 16 26 N -0.48 -18.27 10.79 -176.02 -1.90 -20.17 16 27 C 0.03 1.34 6.19 42.33 0.26 1.60 16 28 C -0.07 -2.32 9.57 71.24 0.68 -1.64 16 29 H 0.23 7.44 7.80 -4.41 -0.03 7.41 16 30 H 0.08 3.45 4.27 -2.39 -0.01 3.44 16 31 H 0.11 5.36 6.22 -2.39 -0.01 5.35 16 32 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 33 H 0.12 2.64 7.14 -2.91 -0.02 2.62 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.09 0.73 8.08 -2.38 -0.02 0.71 16 39 H 0.13 3.32 7.82 -2.91 -0.02 3.30 16 40 H 0.09 2.60 6.95 -2.39 -0.02 2.59 16 41 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16 Total: -1.00 -70.75 363.13 5.41 -65.35 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.32 Total: 35.48 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 7.61 Total: 1.78 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.48 Total: -108.82 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.08 Total: -36.83 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -70.75 5.41 -65.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.854 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds