Wall clock time and date at job start Tue Mar 31 2020 14:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86793 * 120.00123 * 2 1 4 4 H 1.48509 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47671 * 300.00324 * 3 2 1 6 6 H 1.48506 * 109.47046 * 60.00387 * 3 2 1 7 7 C 1.39052 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99624 * 188.21892 * 7 2 1 9 9 N 1.36804 * 120.00327 * 8.21271 * 7 2 1 10 10 C 1.34774 * 120.00573 * 190.24357 * 9 7 2 11 11 O 1.21795 * 119.99667 * 354.32396 * 10 9 7 12 12 C 1.41637 * 120.00519 * 174.31532 * 10 9 7 13 13 C 1.35202 * 120.00025 * 171.81536 * 12 10 9 14 14 C 1.46904 * 120.00057 * 346.45774 * 13 12 10 15 15 C 1.41501 * 126.43896 * 320.01950 * 14 13 12 16 16 N 1.30466 * 108.08593 * 179.88125 * 15 14 13 17 17 N 1.39925 * 108.98648 * 0.38622 * 16 15 14 18 18 C 1.40133 * 125.75545 * 179.78231 * 17 16 15 19 19 C 1.38859 * 120.06891 * 179.68014 * 18 17 16 20 20 C 1.38114 * 119.92924 * 179.77086 * 19 18 17 21 21 C 1.38283 * 120.06955 * 0.51724 * 20 19 18 22 22 C 1.38289 * 120.13448 * 359.73561 * 21 20 19 23 23 C 1.38110 * 120.06819 * 0.02562 * 22 21 20 24 24 C 1.34683 * 108.49000 * 359.75252 * 17 16 15 25 25 C 1.46503 * 120.00056 * 10.24870 * 9 7 2 26 26 C 1.53000 * 117.49973 * 131.42935 * 25 9 7 27 27 C 1.53004 * 60.00286 * 252.51120 * 26 25 9 28 28 H 0.97004 * 119.99780 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99933 * 351.81656 * 12 10 9 30 30 H 1.08001 * 119.99828 * 166.17912 * 13 12 10 31 31 H 1.08007 * 125.96091 * 0.02562 * 15 14 13 32 32 H 1.07998 * 120.03218 * 0.03224 * 19 18 17 33 33 H 1.08000 * 119.96339 * 180.27213 * 20 19 18 34 34 H 1.07998 * 119.93120 * 179.76880 * 21 20 19 35 35 H 1.07999 * 119.95799 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.03152 * 180.02562 * 23 22 21 37 37 H 1.08002 * 126.34339 * 179.97438 * 24 17 16 38 38 H 1.08998 * 115.55038 * 277.14148 * 25 9 7 39 39 H 1.09002 * 117.49994 * 0.02562 * 26 25 9 40 40 H 1.09004 * 117.49650 * 145.02610 * 26 25 9 41 41 H 1.09000 * 117.50097 * 252.51265 * 27 26 25 42 42 H 1.08995 * 117.51480 * 107.47854 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7078 1.3463 0.0006 5 1 1.8890 2.3965 -1.2124 6 1 1.8890 2.3963 1.2126 7 6 2.0089 -1.2043 -0.0005 8 1 3.0806 -1.2091 0.1332 9 7 1.3354 -2.3829 -0.1703 10 6 1.9675 -3.5557 0.0333 11 8 3.1627 -3.5707 0.2669 12 6 1.2418 -4.7707 -0.0243 13 6 1.8978 -5.9523 0.0143 14 6 3.3529 -5.9915 -0.1835 15 6 4.0956 -5.2260 -1.1134 16 7 5.3549 -5.5415 -0.9836 17 7 5.4798 -6.5154 0.0133 18 6 6.6783 -7.1068 0.4347 19 6 6.6663 -8.0611 1.4433 20 6 7.8486 -8.6457 1.8531 21 6 9.0448 -8.2738 1.2674 22 6 9.0607 -7.3199 0.2662 23 6 7.8811 -6.7353 -0.1513 24 6 4.2540 -6.7880 0.5002 25 6 -0.0730 -2.3703 -0.5735 26 6 -0.4843 -3.2810 -1.7320 27 6 -0.4118 -1.7667 -1.9381 28 1 -0.4850 0.8401 0.0004 29 1 0.1646 -4.7532 -0.0991 30 1 1.3526 -6.8669 0.1950 31 1 3.6910 -4.5046 -1.8079 32 1 5.7328 -8.3489 1.9040 33 1 7.8394 -9.3911 2.6345 34 1 9.9685 -8.7296 1.5921 35 1 9.9964 -7.0319 -0.1895 36 1 7.8941 -5.9907 -0.9334 37 1 4.0181 -7.4973 1.2796 38 1 -0.7916 -2.2257 0.2331 39 1 0.2928 -3.8900 -2.1940 40 1 -1.4739 -3.7360 -1.6876 41 1 -1.3535 -1.2254 -2.0292 42 1 0.4131 -1.3787 -2.5356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491201926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:38 Heat of formation + Delta-G solvation = 151.840529 kcal Electronic energy + Delta-G solvation = -26236.130778 eV Core-core repulsion = 22571.796404 eV Total energy + Delta-G solvation = -3664.334374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06900 -39.14980 -38.69346 -36.19772 -33.83961 -33.05549 -32.19408 -31.19716 -31.12331 -29.47564 -28.27492 -25.46387 -23.45886 -23.09480 -22.37390 -21.41398 -21.21381 -20.39273 -19.85807 -18.40044 -17.27739 -16.97272 -16.21958 -15.89540 -15.20878 -15.01877 -14.87622 -14.63617 -14.23429 -14.05195 -13.80194 -13.58950 -13.38930 -12.85220 -12.81871 -12.68103 -12.40588 -12.13143 -11.74200 -11.62951 -11.26485 -11.18491 -11.13343 -10.71115 -10.35676 -10.35399 -10.23386 -10.11915 -9.92171 -9.31394 -9.16136 -9.11717 -8.80753 -8.45466 -8.27658 -7.81136 -7.11846 -6.33191 -3.79328 0.89546 1.23184 1.77397 2.54726 2.74476 3.15121 3.22718 3.30153 3.60341 3.76497 4.08780 4.45934 4.60474 4.75596 4.75674 4.90512 4.93099 5.05051 5.13100 5.22137 5.26208 5.49657 5.51211 5.61359 5.78018 5.84719 5.87698 5.96478 6.02087 6.15926 6.23071 6.29578 6.31230 6.36984 6.39104 6.44833 6.70079 6.81808 6.92522 6.98634 7.04922 7.16344 7.26705 7.49965 7.50879 8.07545 8.13789 8.48549 9.18856 9.41818 10.04319 10.63767 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.003103 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.328701 B = 9022.425170 C =10053.721463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.031 3.969 3 Si 0.925 3.075 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.294 4.294 8 H 0.107 0.893 9 N -0.409 5.409 10 C 0.458 3.542 11 O -0.587 6.587 12 C -0.172 4.172 13 C -0.052 4.052 14 C -0.158 4.158 15 C 0.148 3.852 16 N -0.312 5.312 17 N -0.331 5.331 18 C 0.183 3.817 19 C -0.153 4.153 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.094 4.094 23 C -0.129 4.129 24 C 0.039 3.961 25 C 0.143 3.857 26 C -0.229 4.229 27 C -0.133 4.133 28 H 0.267 0.733 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.171 0.829 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 -14.653 -0.011 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.174 4.174 3 Si 0.751 3.249 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.422 4.422 8 H 0.124 0.876 9 N -0.125 5.125 10 C 0.251 3.749 11 O -0.474 6.474 12 C -0.194 4.194 13 C -0.075 4.075 14 C -0.168 4.168 15 C -0.041 4.041 16 N -0.130 5.130 17 N -0.106 5.106 18 C 0.089 3.911 19 C -0.174 4.174 20 C -0.111 4.111 21 C -0.164 4.164 22 C -0.113 4.113 23 C -0.149 4.149 24 C -0.101 4.101 25 C 0.037 3.963 26 C -0.267 4.267 27 C -0.170 4.170 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.197 0.803 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.188 0.812 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.249 -14.215 -0.288 15.960 hybrid contribution -0.888 1.045 0.442 1.441 sum 6.362 -13.170 0.154 14.627 Atomic orbital electron populations 1.69992 1.05799 1.27203 1.47316 1.25296 0.95588 0.99657 0.96834 0.85867 0.79969 0.81230 0.77785 1.19218 1.20605 1.20729 1.19853 0.93798 0.82358 1.46221 0.87575 1.43389 1.08352 1.05541 1.55251 1.16756 0.88022 0.83893 0.86212 1.90695 1.14603 1.86446 1.55706 1.22363 1.00264 0.93615 1.03159 1.21252 0.90495 0.96739 0.99032 1.19319 0.94267 1.01269 1.01971 1.23945 0.89229 0.94335 0.96586 1.77095 1.20140 1.07268 1.08478 1.45312 1.03898 1.31605 1.29755 1.17604 0.84149 0.94023 0.95320 1.20813 0.99696 0.98586 0.98329 1.20908 0.91670 0.99155 0.99341 1.21129 0.98076 0.99198 0.98032 1.21039 0.97537 0.95998 0.96727 1.20933 0.90501 1.01710 1.01720 1.22781 0.84365 1.02225 1.00773 1.20995 0.84491 0.99790 0.91017 1.23701 1.01726 0.95048 1.06241 1.22665 1.01843 0.91989 1.00544 0.92220 0.85889 0.86300 0.80266 0.85419 0.85399 0.85852 0.85439 0.84516 0.81157 0.87327 0.89558 0.89429 0.89681 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.63 9.40 55.50 0.52 -21.10 16 2 C 0.03 0.78 5.14 -17.45 -0.09 0.69 16 3 Si 0.92 20.49 29.56 -169.99 -5.02 15.47 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.29 -7.97 9.43 -15.03 -0.14 -8.11 16 8 H 0.11 3.08 7.20 -52.49 -0.38 2.71 16 9 N -0.41 -10.15 2.93 -110.93 -0.33 -10.47 16 10 C 0.46 10.86 6.61 -14.96 -0.10 10.76 16 11 O -0.59 -15.61 11.77 5.10 0.06 -15.55 16 12 C -0.17 -3.25 7.85 -39.37 -0.31 -3.56 16 13 C -0.05 -0.87 10.14 -37.16 -0.38 -1.24 16 14 C -0.16 -2.90 4.67 -105.11 -0.49 -3.39 16 15 C 0.15 2.98 8.96 -16.89 -0.15 2.83 16 16 N -0.31 -6.26 11.76 30.91 0.36 -5.89 16 17 N -0.33 -5.84 3.77 -10.11 -0.04 -5.88 16 18 C 0.18 2.76 6.68 -83.60 -0.56 2.20 16 19 C -0.15 -1.83 9.45 -39.40 -0.37 -2.21 16 20 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 21 C -0.15 -1.39 10.04 -39.55 -0.40 -1.79 16 22 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 23 C -0.13 -1.79 9.65 -39.40 -0.38 -2.17 16 24 C 0.04 0.64 10.82 -16.26 -0.18 0.47 16 25 C 0.14 3.08 3.44 -67.92 -0.23 2.85 16 26 C -0.23 -4.01 8.08 -26.73 -0.22 -4.23 16 27 C -0.13 -2.67 8.44 -26.72 -0.23 -2.90 16 28 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 29 H 0.12 2.07 5.86 -52.49 -0.31 1.76 16 30 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.18 3.66 7.55 -52.48 -0.40 3.27 16 32 H 0.13 1.30 6.71 -52.49 -0.35 0.94 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 2.02 7.68 -52.49 -0.40 1.62 16 37 H 0.17 2.10 7.01 -52.49 -0.37 1.73 16 38 H 0.11 2.46 7.77 -51.93 -0.40 2.06 16 39 H 0.09 1.52 7.27 -51.93 -0.38 1.14 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 352.03 15.07 5.30 5.30 Total: -1.00 -31.26 352.03 -9.23 -40.50 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.08 Total: 10.17 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -5.01 Total: -12.54 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.52 Total: -43.35 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.06 Total: -15.55 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.26 -9.23 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491201926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.336 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds