Wall clock time and date at job start Tue Mar 31 2020 14:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86793 * 120.00123 * 2 1 4 4 H 1.48509 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47671 * 300.00324 * 3 2 1 6 6 H 1.48506 * 109.47046 * 60.00387 * 3 2 1 7 7 C 1.39052 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99624 * 188.21892 * 7 2 1 9 9 N 1.36804 * 120.00327 * 8.21271 * 7 2 1 10 10 C 1.34774 * 120.00573 * 190.24357 * 9 7 2 11 11 O 1.21795 * 119.99667 * 354.32396 * 10 9 7 12 12 C 1.41637 * 120.00519 * 174.31532 * 10 9 7 13 13 C 1.35202 * 120.00025 * 171.81536 * 12 10 9 14 14 C 1.46904 * 120.00057 * 346.45774 * 13 12 10 15 15 C 1.41501 * 126.43896 * 320.01950 * 14 13 12 16 16 N 1.30466 * 108.08593 * 179.88125 * 15 14 13 17 17 N 1.39925 * 108.98648 * 0.38622 * 16 15 14 18 18 C 1.40133 * 125.75545 * 179.78231 * 17 16 15 19 19 C 1.38859 * 120.06891 * 179.68014 * 18 17 16 20 20 C 1.38114 * 119.92924 * 179.77086 * 19 18 17 21 21 C 1.38283 * 120.06955 * 0.51724 * 20 19 18 22 22 C 1.38289 * 120.13448 * 359.73561 * 21 20 19 23 23 C 1.38110 * 120.06819 * 0.02562 * 22 21 20 24 24 C 1.34683 * 108.49000 * 359.75252 * 17 16 15 25 25 C 1.46503 * 120.00056 * 10.24870 * 9 7 2 26 26 C 1.53000 * 117.49973 * 131.42935 * 25 9 7 27 27 C 1.53004 * 60.00286 * 252.51120 * 26 25 9 28 28 H 0.97004 * 119.99780 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99933 * 351.81656 * 12 10 9 30 30 H 1.08001 * 119.99828 * 166.17912 * 13 12 10 31 31 H 1.08007 * 125.96091 * 0.02562 * 15 14 13 32 32 H 1.07998 * 120.03218 * 0.03224 * 19 18 17 33 33 H 1.08000 * 119.96339 * 180.27213 * 20 19 18 34 34 H 1.07998 * 119.93120 * 179.76880 * 21 20 19 35 35 H 1.07999 * 119.95799 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.03152 * 180.02562 * 23 22 21 37 37 H 1.08002 * 126.34339 * 179.97438 * 24 17 16 38 38 H 1.08998 * 115.55038 * 277.14148 * 25 9 7 39 39 H 1.09002 * 117.49994 * 0.02562 * 26 25 9 40 40 H 1.09004 * 117.49650 * 145.02610 * 26 25 9 41 41 H 1.09000 * 117.50097 * 252.51265 * 27 26 25 42 42 H 1.08995 * 117.51480 * 107.47854 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7078 1.3463 0.0006 5 1 1.8890 2.3965 -1.2124 6 1 1.8890 2.3963 1.2126 7 6 2.0089 -1.2043 -0.0005 8 1 3.0806 -1.2091 0.1332 9 7 1.3354 -2.3829 -0.1703 10 6 1.9675 -3.5557 0.0333 11 8 3.1627 -3.5707 0.2669 12 6 1.2418 -4.7707 -0.0243 13 6 1.8978 -5.9523 0.0143 14 6 3.3529 -5.9915 -0.1835 15 6 4.0956 -5.2260 -1.1134 16 7 5.3549 -5.5415 -0.9836 17 7 5.4798 -6.5154 0.0133 18 6 6.6783 -7.1068 0.4347 19 6 6.6663 -8.0611 1.4433 20 6 7.8486 -8.6457 1.8531 21 6 9.0448 -8.2738 1.2674 22 6 9.0607 -7.3199 0.2662 23 6 7.8811 -6.7353 -0.1513 24 6 4.2540 -6.7880 0.5002 25 6 -0.0730 -2.3703 -0.5735 26 6 -0.4843 -3.2810 -1.7320 27 6 -0.4118 -1.7667 -1.9381 28 1 -0.4850 0.8401 0.0004 29 1 0.1646 -4.7532 -0.0991 30 1 1.3526 -6.8669 0.1950 31 1 3.6910 -4.5046 -1.8079 32 1 5.7328 -8.3489 1.9040 33 1 7.8394 -9.3911 2.6345 34 1 9.9685 -8.7296 1.5921 35 1 9.9964 -7.0319 -0.1895 36 1 7.8941 -5.9907 -0.9334 37 1 4.0181 -7.4973 1.2796 38 1 -0.7916 -2.2257 0.2331 39 1 0.2928 -3.8900 -2.1940 40 1 -1.4739 -3.7360 -1.6876 41 1 -1.3535 -1.2254 -2.0292 42 1 0.4131 -1.3787 -2.5356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491201926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:37 Heat of formation + Delta-G solvation = 134.809999 kcal Electronic energy + Delta-G solvation = -26236.869277 eV Core-core repulsion = 22571.796404 eV Total energy + Delta-G solvation = -3665.072874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.39265 -40.73815 -39.80040 -37.89723 -35.32691 -34.60872 -33.62292 -33.00171 -32.08991 -30.73172 -29.54364 -27.24589 -24.81117 -24.24004 -23.64514 -23.06449 -22.68897 -21.57780 -21.30339 -19.76422 -18.89656 -18.54809 -17.67847 -17.01190 -16.82450 -16.30440 -16.23118 -15.96895 -15.88433 -15.50744 -14.99323 -14.88577 -14.55754 -14.46706 -14.29793 -13.99228 -13.71998 -13.58247 -13.23737 -12.97508 -12.90658 -12.56567 -12.32892 -12.17208 -12.15613 -12.13949 -11.73861 -11.55187 -11.38942 -10.91741 -10.63991 -10.49382 -10.07098 -10.00745 -9.72496 -9.57211 -8.50242 -8.21631 -5.79890 -0.17093 0.34861 0.40432 1.28787 1.36883 1.37319 1.49380 1.53587 2.13554 2.26557 2.69224 2.83241 3.10418 3.27814 3.35539 3.52481 3.81338 3.96146 4.00286 4.21996 4.25934 4.32331 4.34210 4.38443 4.45121 4.54060 4.59493 4.69745 4.77299 4.78631 4.89458 4.98942 5.03856 5.21851 5.33906 5.40095 5.44259 5.47079 5.48674 5.51952 5.59197 5.65471 5.74478 5.87438 6.16007 6.32827 6.61167 6.73382 7.27380 7.60148 8.21662 8.71472 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.003103 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.328701 B = 9022.425170 C =10053.721463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.005 3.995 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.067 0.933 9 N -0.431 5.431 10 C 0.459 3.541 11 O -0.627 6.627 12 C -0.208 4.208 13 C -0.002 4.002 14 C -0.199 4.199 15 C 0.127 3.873 16 N -0.347 5.347 17 N -0.330 5.330 18 C 0.135 3.865 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.132 4.132 22 C -0.098 4.098 23 C -0.152 4.152 24 C 0.060 3.940 25 C 0.122 3.878 26 C -0.182 4.182 27 C -0.141 4.141 28 H 0.271 0.729 29 H 0.148 0.852 30 H 0.174 0.826 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.219 0.781 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -18.448 1.580 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.198 4.198 3 Si 0.802 3.198 4 H -0.210 1.210 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.085 0.915 9 N -0.148 5.148 10 C 0.254 3.746 11 O -0.516 6.516 12 C -0.229 4.229 13 C -0.024 4.024 14 C -0.209 4.209 15 C -0.061 4.061 16 N -0.166 5.166 17 N -0.104 5.104 18 C 0.043 3.957 19 C -0.170 4.170 20 C -0.105 4.105 21 C -0.150 4.150 22 C -0.116 4.116 23 C -0.173 4.173 24 C -0.083 4.083 25 C 0.017 3.983 26 C -0.219 4.219 27 C -0.179 4.179 28 H 0.081 0.919 29 H 0.165 0.835 30 H 0.191 0.809 31 H 0.175 0.825 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.207 -18.022 1.287 19.452 hybrid contribution -0.528 1.918 0.022 1.990 sum 6.679 -16.104 1.310 17.483 Atomic orbital electron populations 1.70063 1.05958 1.27759 1.47111 1.25794 0.96484 1.01303 0.96249 0.85118 0.77892 0.78406 0.78380 1.21011 1.19299 1.19775 1.19549 0.92553 0.84588 1.49623 0.91541 1.43484 1.09599 1.05042 1.56651 1.17622 0.87748 0.85221 0.84037 1.90670 1.16614 1.87436 1.56919 1.22229 1.01134 0.91966 1.07561 1.21844 0.89634 0.97858 0.93112 1.19633 0.95741 1.02503 1.03014 1.23771 0.89969 0.94749 0.97591 1.76989 1.20317 1.08951 1.10390 1.45569 1.05418 1.30679 1.28773 1.18105 0.83421 0.96356 0.97816 1.21167 1.01723 0.97233 0.96926 1.21421 0.90686 0.98963 0.99461 1.21637 0.99723 0.97455 0.96173 1.21344 0.97127 0.95990 0.97149 1.20990 0.91955 1.02283 1.02024 1.23500 0.83324 1.01264 1.00179 1.20924 0.82700 1.03331 0.91339 1.23711 1.03402 0.93173 1.01663 1.22571 1.01177 0.94561 0.99543 0.91883 0.83470 0.80857 0.82475 0.83321 0.81521 0.82175 0.83289 0.87083 0.76456 0.88704 0.89555 0.85293 0.88761 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.84 9.40 21.68 0.20 -44.63 16 2 C 0.01 0.27 5.14 84.96 0.44 0.71 16 3 Si 0.98 44.00 29.56 68.60 2.03 46.02 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -19.49 9.43 84.11 0.79 -18.70 16 8 H 0.07 4.27 7.20 -2.91 -0.02 4.25 16 9 N -0.43 -22.55 2.93 -623.04 -1.83 -24.38 16 10 C 0.46 22.75 6.61 85.08 0.56 23.32 16 11 O -0.63 -35.50 11.77 -4.65 -0.05 -35.56 16 12 C -0.21 -7.67 7.85 22.41 0.18 -7.49 16 13 C 0.00 -0.07 10.14 23.84 0.24 0.17 16 14 C -0.20 -7.19 4.67 -20.18 -0.09 -7.28 16 15 C 0.13 5.43 8.96 85.70 0.77 6.20 16 16 N -0.35 -14.84 11.76 -56.12 -0.66 -15.50 16 17 N -0.33 -11.71 3.77 -185.89 -0.70 -12.41 16 18 C 0.14 3.98 6.68 38.11 0.25 4.24 16 19 C -0.15 -3.11 9.45 22.39 0.21 -2.90 16 20 C -0.09 -1.30 10.04 22.25 0.22 -1.08 16 21 C -0.13 -1.96 10.04 22.29 0.22 -1.74 16 22 C -0.10 -1.94 10.04 22.25 0.22 -1.72 16 23 C -0.15 -4.33 9.65 22.39 0.22 -4.11 16 24 C 0.06 1.85 10.82 84.28 0.91 2.77 16 25 C 0.12 5.37 3.44 44.99 0.15 5.53 16 26 C -0.18 -6.13 8.08 30.60 0.25 -5.88 16 27 C -0.14 -5.76 8.44 30.60 0.26 -5.50 16 28 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 29 H 0.15 4.63 5.86 -2.91 -0.02 4.61 16 30 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.16 7.17 7.55 -2.91 -0.02 7.15 16 32 H 0.15 2.34 6.71 -2.91 -0.02 2.32 16 33 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.11 3.61 7.68 -2.91 -0.02 3.59 16 37 H 0.22 4.36 7.01 -2.91 -0.02 4.34 16 38 H 0.10 4.38 7.77 -2.39 -0.02 4.36 16 39 H 0.09 2.95 7.27 -2.39 -0.02 2.94 16 40 H 0.13 3.32 8.14 -2.38 -0.02 3.30 16 41 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -77.04 352.03 5.84 -71.20 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 1.04 Total: 28.73 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.81 Total: -13.48 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -2.98 Total: -96.92 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.05 Total: -35.56 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.04 5.84 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491201926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.012 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds