Wall clock time and date at job start Tue Mar 31 2020 14:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48503 * 109.47073 * 269.99935 * 3 2 1 5 5 H 1.48507 * 109.47143 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.47292 * 149.99791 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00161 * 270.00314 * 10 9 7 12 12 C 1.50708 * 109.47013 * 269.99922 * 11 10 9 13 13 C 1.38664 * 120.41879 * 269.72112 * 12 11 10 14 14 C 1.38629 * 118.41927 * 179.78435 * 13 12 11 15 15 C 1.38227 * 119.16193 * 0.51478 * 14 13 12 16 16 N 1.31861 * 120.76205 * 359.72242 * 15 14 13 17 17 C 1.31887 * 121.72416 * 0.02562 * 16 15 14 18 18 C 1.34776 * 120.00074 * 90.00502 * 10 9 7 19 19 O 1.21665 * 119.99903 * 180.02562 * 18 10 9 20 20 C 1.46654 * 119.99835 * 359.72324 * 18 10 9 21 21 C 1.34637 * 120.00212 * 187.00272 * 20 18 10 22 22 C 1.47403 * 119.99643 * 11.46172 * 21 20 18 23 23 C 1.40140 * 120.94979 * 225.79636 * 22 21 20 24 24 C 1.38001 * 118.96523 * 179.73225 * 23 22 21 25 25 N 1.31881 * 120.92642 * 0.55778 * 24 23 22 26 26 C 1.31886 * 122.11274 * 359.71641 * 25 24 23 27 27 C 1.38000 * 120.92614 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99737 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47087 * 60.00171 * 9 7 2 30 30 H 1.09003 * 109.47151 * 300.00718 * 9 7 2 31 31 H 1.08998 * 109.46946 * 29.99532 * 11 10 9 32 32 H 1.08994 * 109.47469 * 150.00193 * 11 10 9 33 33 H 1.08003 * 120.79343 * 0.02562 * 13 12 11 34 34 H 1.08007 * 120.41879 * 180.21709 * 14 13 12 35 35 H 1.08004 * 119.61900 * 179.74892 * 15 14 13 36 36 H 1.07997 * 119.61681 * 179.97438 * 17 16 15 37 37 H 1.07996 * 120.00270 * 6.99910 * 20 18 10 38 38 H 1.07995 * 120.00339 * 191.46669 * 21 20 18 39 39 H 1.07999 * 120.51470 * 0.02562 * 23 22 21 40 40 H 1.08002 * 119.53584 * 180.24725 * 24 23 22 41 41 H 1.08006 * 119.53615 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.51694 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6792 -4.1705 -1.2655 12 6 1.7624 -5.2851 -1.6996 13 6 2.0115 -6.5918 -1.3080 14 6 1.1389 -7.5840 -1.7273 15 6 0.0632 -7.2418 -2.5251 16 7 -0.1400 -5.9889 -2.8824 17 6 0.6665 -5.0187 -2.4980 18 6 2.6409 -4.1238 1.1703 19 8 3.4319 -5.0483 1.1711 20 6 2.1690 -3.5615 2.4399 21 6 2.7099 -3.9744 3.6016 22 6 3.9358 -4.7929 3.5939 23 6 4.0434 -5.9373 4.3957 24 6 5.2078 -6.6766 4.3523 25 7 6.2130 -6.3133 3.5797 26 6 6.1566 -5.2411 2.8138 27 6 5.0290 -4.4459 2.7887 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5562 0.8919 31 1 2.6869 -3.3895 -2.0258 32 1 3.6885 -4.5604 -1.1348 33 1 2.8629 -6.8303 -0.6877 34 1 1.3002 -8.6121 -1.4383 35 1 -0.6190 -8.0095 -2.8594 36 1 0.4682 -4.0043 -2.8110 37 1 1.3876 -2.8160 2.4430 38 1 2.2456 -3.7062 4.5390 39 1 3.2259 -6.2385 5.0339 40 1 5.2991 -7.5625 4.9633 41 1 7.0045 -4.9823 2.1968 42 1 4.9898 -3.5696 2.1587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491303140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:22 Heat of formation + Delta-G solvation = 65.550601 kcal Electronic energy + Delta-G solvation = -26639.007961 eV Core-core repulsion = 22970.931775 eV Total energy + Delta-G solvation = -3668.076187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23855 -39.82968 -38.83439 -35.56623 -34.11174 -33.08256 -32.20235 -31.45295 -30.93671 -30.23142 -27.66204 -26.35578 -24.09186 -23.46865 -23.07969 -22.89257 -22.17586 -20.67339 -18.21917 -17.23188 -16.95722 -16.55646 -16.15301 -16.02730 -15.71958 -15.49950 -15.11837 -15.03660 -14.49235 -14.04096 -13.79639 -13.58588 -13.41673 -13.21034 -12.96083 -12.85544 -12.72259 -12.45194 -12.00444 -11.86033 -11.63892 -11.46769 -11.21867 -11.06357 -10.82667 -10.29545 -10.13863 -9.91642 -9.61610 -9.37001 -9.26757 -9.21706 -8.86302 -8.82519 -8.66771 -8.22575 -7.86404 -6.28445 -4.36989 0.99256 1.27087 1.48838 1.49575 2.14482 3.16301 3.24518 3.26768 3.71954 3.80601 4.15265 4.17729 4.26129 4.64024 4.70462 4.83948 4.98429 5.04769 5.05706 5.12679 5.17743 5.24753 5.30810 5.34349 5.46437 5.58798 5.76442 5.84520 5.90615 6.00929 6.04040 6.10090 6.13689 6.32041 6.33359 6.50858 6.53911 6.63474 6.71574 6.90321 6.98951 7.05485 7.35644 7.65289 7.92196 8.13315 8.16026 8.25663 8.66500 8.83564 9.31724 10.78048 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007383 B = 0.005761 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3791.601707 B = 4859.300018 C = 7863.784783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.235 3.765 10 N -0.580 5.580 11 C 0.161 3.839 12 C -0.146 4.146 13 C -0.054 4.054 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.115 3.885 18 C 0.538 3.462 19 O -0.560 6.560 20 C -0.155 4.155 21 C -0.077 4.077 22 C 0.001 3.999 23 C -0.165 4.165 24 C 0.083 3.917 25 N -0.491 5.491 26 C 0.084 3.916 27 C -0.095 4.095 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -10.356 3.187 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.116 3.884 10 N -0.309 5.309 11 C 0.037 3.963 12 C -0.149 4.149 13 C -0.081 4.081 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.328 3.672 19 O -0.442 6.442 20 C -0.176 4.176 21 C -0.096 4.096 22 C -0.007 4.007 23 C -0.185 4.185 24 C -0.074 4.074 25 N -0.201 5.201 26 C -0.071 4.071 27 C -0.114 4.114 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.056 -10.963 2.602 11.975 hybrid contribution 0.015 1.418 0.445 1.487 sum 4.071 -9.544 3.047 10.815 Atomic orbital electron populations 1.69918 1.06008 1.27499 1.49244 1.24933 0.94834 0.99307 0.94577 0.86517 0.79850 0.82886 0.78376 1.20438 1.21031 1.19752 1.21451 0.93586 0.90263 1.52575 0.92005 1.19533 0.87523 0.82484 0.98867 1.48231 1.45039 1.33837 1.03774 1.20141 0.95903 0.93313 0.86938 1.21411 0.98682 0.95939 0.98854 1.21651 0.98558 0.92168 0.95712 1.22108 0.96963 1.00434 1.00641 1.22700 0.95756 0.93560 0.94698 1.67709 1.28941 1.00802 1.22331 1.22810 0.89617 0.98560 0.93263 1.18448 0.80949 0.82926 0.84841 1.90760 1.35388 1.30479 1.87589 1.23477 1.02707 0.99463 0.91918 1.22197 0.93651 0.95743 0.98058 1.19244 0.93510 0.94081 0.93902 1.22128 0.99403 0.96147 1.00833 1.22417 0.89331 0.98889 0.96780 1.67460 1.30496 1.15837 1.06300 1.22421 0.97300 0.90887 0.96522 1.22099 0.92943 1.00542 0.95864 0.92374 0.94452 0.94272 0.89001 0.89727 0.84532 0.85307 0.83282 0.82520 0.83386 0.84618 0.85413 0.83559 0.83528 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.30 13.29 55.43 0.74 -22.57 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.01 9.39 -34.44 -0.32 -13.33 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.24 5.14 4.91 -5.20 -0.03 5.12 16 10 N -0.58 -11.04 2.44 -178.00 -0.43 -11.48 16 11 C 0.16 2.71 5.56 -5.19 -0.03 2.68 16 12 C -0.15 -2.34 5.48 -104.48 -0.57 -2.91 16 13 C -0.05 -0.82 9.86 -39.28 -0.39 -1.21 16 14 C -0.18 -2.40 10.11 -39.44 -0.40 -2.80 16 15 C 0.09 1.23 11.18 -17.54 -0.20 1.04 16 16 N -0.49 -7.94 10.36 -13.25 -0.14 -8.08 16 17 C 0.11 1.87 10.86 -17.55 -0.19 1.68 16 18 C 0.54 10.05 6.79 -12.86 -0.09 9.97 16 19 O -0.56 -10.72 11.59 5.22 0.06 -10.66 16 20 C -0.15 -2.65 9.17 -37.46 -0.34 -2.99 16 21 C -0.08 -1.12 9.85 -37.13 -0.37 -1.49 16 22 C 0.00 0.01 4.44 -104.74 -0.46 -0.45 16 23 C -0.17 -2.23 9.90 -38.95 -0.39 -2.62 16 24 C 0.08 1.14 11.17 -17.62 -0.20 0.94 16 25 N -0.49 -7.64 10.34 -13.35 -0.14 -7.77 16 26 C 0.08 1.28 11.17 -17.62 -0.20 1.08 16 27 C -0.09 -1.51 6.82 -38.96 -0.27 -1.77 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 0.89 6.03 -51.93 -0.31 0.58 16 31 H 0.09 1.50 8.02 -51.93 -0.42 1.09 16 32 H 0.08 1.40 7.37 -51.93 -0.38 1.02 16 33 H 0.14 2.11 7.71 -52.48 -0.40 1.70 16 34 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 37 H 0.15 2.62 6.16 -52.49 -0.32 2.29 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.13 2.09 7.37 -52.49 -0.39 1.71 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -28.80 364.26 -9.12 -37.92 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.15 Total: 8.06 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -4.53 Total: -5.49 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.03 Total: -49.90 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.80 -9.12 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491303140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.471 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds