Wall clock time and date at job start Tue Mar 31 2020 14:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48503 * 109.47073 * 269.99935 * 3 2 1 5 5 H 1.48507 * 109.47143 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.47292 * 149.99791 * 3 2 1 7 7 C 1.37878 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00161 * 270.00314 * 10 9 7 12 12 C 1.50708 * 109.47013 * 269.99922 * 11 10 9 13 13 C 1.38664 * 120.41879 * 269.72112 * 12 11 10 14 14 C 1.38629 * 118.41927 * 179.78435 * 13 12 11 15 15 C 1.38227 * 119.16193 * 0.51478 * 14 13 12 16 16 N 1.31861 * 120.76205 * 359.72242 * 15 14 13 17 17 C 1.31887 * 121.72416 * 0.02562 * 16 15 14 18 18 C 1.34776 * 120.00074 * 90.00502 * 10 9 7 19 19 O 1.21665 * 119.99903 * 180.02562 * 18 10 9 20 20 C 1.46654 * 119.99835 * 359.72324 * 18 10 9 21 21 C 1.34637 * 120.00212 * 187.00272 * 20 18 10 22 22 C 1.47403 * 119.99643 * 11.46172 * 21 20 18 23 23 C 1.40140 * 120.94979 * 225.79636 * 22 21 20 24 24 C 1.38001 * 118.96523 * 179.73225 * 23 22 21 25 25 N 1.31881 * 120.92642 * 0.55778 * 24 23 22 26 26 C 1.31886 * 122.11274 * 359.71641 * 25 24 23 27 27 C 1.38000 * 120.92614 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99737 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47087 * 60.00171 * 9 7 2 30 30 H 1.09003 * 109.47151 * 300.00718 * 9 7 2 31 31 H 1.08998 * 109.46946 * 29.99532 * 11 10 9 32 32 H 1.08994 * 109.47469 * 150.00193 * 11 10 9 33 33 H 1.08003 * 120.79343 * 0.02562 * 13 12 11 34 34 H 1.08007 * 120.41879 * 180.21709 * 14 13 12 35 35 H 1.08004 * 119.61900 * 179.74892 * 15 14 13 36 36 H 1.07997 * 119.61681 * 179.97438 * 17 16 15 37 37 H 1.07996 * 120.00270 * 6.99910 * 20 18 10 38 38 H 1.07995 * 120.00339 * 191.46669 * 21 20 18 39 39 H 1.07999 * 120.51470 * 0.02562 * 23 22 21 40 40 H 1.08002 * 119.53584 * 180.24725 * 24 23 22 41 41 H 1.08006 * 119.53615 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.51694 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6792 -4.1705 -1.2655 12 6 1.7624 -5.2851 -1.6996 13 6 2.0115 -6.5918 -1.3080 14 6 1.1389 -7.5840 -1.7273 15 6 0.0632 -7.2418 -2.5251 16 7 -0.1400 -5.9889 -2.8824 17 6 0.6665 -5.0187 -2.4980 18 6 2.6409 -4.1238 1.1703 19 8 3.4319 -5.0483 1.1711 20 6 2.1690 -3.5615 2.4399 21 6 2.7099 -3.9744 3.6016 22 6 3.9358 -4.7929 3.5939 23 6 4.0434 -5.9373 4.3957 24 6 5.2078 -6.6766 4.3523 25 7 6.2130 -6.3133 3.5797 26 6 6.1566 -5.2411 2.8138 27 6 5.0290 -4.4459 2.7887 28 1 -0.4849 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5562 0.8919 31 1 2.6869 -3.3895 -2.0258 32 1 3.6885 -4.5604 -1.1348 33 1 2.8629 -6.8303 -0.6877 34 1 1.3002 -8.6121 -1.4383 35 1 -0.6190 -8.0095 -2.8594 36 1 0.4682 -4.0043 -2.8110 37 1 1.3876 -2.8160 2.4430 38 1 2.2456 -3.7062 4.5390 39 1 3.2259 -6.2385 5.0339 40 1 5.2991 -7.5625 4.9633 41 1 7.0045 -4.9823 2.1968 42 1 4.9898 -3.5696 2.1587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491303140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:21 Heat of formation + Delta-G solvation = 50.972858 kcal Electronic energy + Delta-G solvation = -26639.640100 eV Core-core repulsion = 22970.931775 eV Total energy + Delta-G solvation = -3668.708325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51788 -40.99107 -40.14603 -37.03484 -35.44708 -34.71904 -33.61306 -32.66604 -32.04367 -31.44722 -29.36555 -27.74178 -25.42052 -24.90865 -24.35402 -24.17925 -23.37804 -21.93169 -19.60440 -18.64095 -18.56347 -17.92508 -17.49379 -17.22508 -16.95947 -16.72994 -16.49881 -16.37261 -16.02015 -15.33201 -15.05714 -14.79208 -14.53801 -14.46505 -14.22365 -14.20846 -14.13635 -13.90926 -13.56203 -13.22655 -13.12791 -12.78104 -12.68654 -12.58338 -12.44356 -12.05292 -11.73002 -11.41106 -10.85582 -10.71192 -10.56979 -10.47859 -10.36935 -10.01256 -9.99054 -9.50795 -9.39354 -8.19934 -6.34469 -0.23596 0.10657 0.31066 0.37560 0.93327 1.41527 1.44831 1.52994 2.28255 2.40603 2.47460 2.94241 3.03107 3.10994 3.52202 3.62510 3.69428 3.73892 3.87219 3.94954 4.04801 4.07437 4.10359 4.24299 4.34797 4.45237 4.55371 4.66473 4.72061 4.78538 4.82728 4.88228 4.95110 4.97801 5.10788 5.17088 5.20885 5.34644 5.39325 5.52210 5.66270 5.75411 5.81406 5.88919 6.04926 6.54654 6.81147 6.98893 7.13735 7.30794 7.41282 8.85331 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007383 B = 0.005761 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3791.601707 B = 4859.300018 C = 7863.784783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.254 3.746 10 N -0.586 5.586 11 C 0.164 3.836 12 C -0.154 4.154 13 C -0.062 4.062 14 C -0.170 4.170 15 C 0.090 3.910 16 N -0.511 5.511 17 C 0.100 3.900 18 C 0.536 3.464 19 O -0.567 6.567 20 C -0.192 4.192 21 C -0.042 4.042 22 C -0.021 4.021 23 C -0.158 4.158 24 C 0.081 3.919 25 N -0.508 5.508 26 C 0.075 3.925 27 C -0.109 4.109 28 H 0.267 0.733 29 H 0.020 0.980 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.181 0.819 41 H 0.160 0.840 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -12.153 4.544 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.133 3.867 10 N -0.315 5.315 11 C 0.040 3.960 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.190 4.190 15 C -0.067 4.067 16 N -0.220 5.220 17 C -0.056 4.056 18 C 0.328 3.672 19 O -0.450 6.450 20 C -0.213 4.213 21 C -0.062 4.062 22 C -0.029 4.029 23 C -0.177 4.177 24 C -0.077 4.077 25 N -0.218 5.218 26 C -0.080 4.080 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.182 0.818 35 H 0.203 0.797 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.198 0.802 41 H 0.177 0.823 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.374 -12.765 3.954 14.061 hybrid contribution -0.030 1.814 0.096 1.816 sum 4.344 -10.951 4.050 12.458 Atomic orbital electron populations 1.70010 1.07190 1.28141 1.50476 1.25587 0.95449 1.02095 0.94428 0.85629 0.78703 0.79506 0.78288 1.20207 1.20792 1.19523 1.21634 0.93277 0.91356 1.51728 0.92763 1.19105 0.87480 0.82768 0.97342 1.48160 1.44935 1.33520 1.04868 1.20134 0.96132 0.93596 0.86096 1.21274 0.98696 0.96200 0.99560 1.21714 0.99035 0.92208 0.95940 1.22456 0.95704 1.01574 0.99222 1.23333 0.96258 0.93263 0.93879 1.67716 1.29246 1.01886 1.23106 1.22723 0.90178 0.98646 0.94082 1.18713 0.80596 0.82770 0.85136 1.90743 1.35678 1.30789 1.87744 1.23320 1.04281 1.01508 0.92160 1.22589 0.92177 0.92839 0.98554 1.19475 0.93461 0.95297 0.94671 1.22473 1.00263 0.94891 1.00109 1.23039 0.88769 0.99651 0.96217 1.67522 1.31542 1.15893 1.06873 1.22633 0.97606 0.90913 0.96863 1.22044 0.93990 1.00524 0.96372 0.92362 0.96221 0.95355 0.89405 0.89681 0.84972 0.81821 0.79703 0.83383 0.84543 0.81044 0.82193 0.80208 0.82321 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 13.29 21.45 0.28 -48.91 16 2 C 0.03 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.95 40.58 29.54 68.60 2.03 42.61 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -26.82 9.39 25.60 0.24 -26.58 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.25 11.58 4.91 85.63 0.42 12.00 16 10 N -0.59 -23.18 2.44 -835.29 -2.04 -25.22 16 11 C 0.16 5.76 5.56 85.64 0.48 6.23 16 12 C -0.15 -5.06 5.48 -19.77 -0.11 -5.17 16 13 C -0.06 -1.84 9.86 22.47 0.22 -1.62 16 14 C -0.17 -4.10 10.11 22.36 0.23 -3.87 16 15 C 0.09 2.26 11.18 84.69 0.95 3.21 16 16 N -0.51 -16.36 10.36 -195.84 -2.03 -18.39 16 17 C 0.10 3.37 10.86 84.67 0.92 4.29 16 18 C 0.54 20.45 6.79 86.44 0.59 21.04 16 19 O -0.57 -21.84 11.59 -4.24 -0.05 -21.89 16 20 C -0.19 -6.60 9.17 23.64 0.22 -6.38 16 21 C -0.04 -1.17 9.85 23.86 0.24 -0.94 16 22 C -0.02 -0.60 4.44 -19.94 -0.09 -0.69 16 23 C -0.16 -3.77 9.90 22.68 0.22 -3.54 16 24 C 0.08 1.96 11.17 84.63 0.95 2.90 16 25 N -0.51 -14.91 10.34 -196.14 -2.03 -16.94 16 26 C 0.07 2.22 11.17 84.63 0.95 3.17 16 27 C -0.11 -3.46 6.82 22.67 0.15 -3.30 16 28 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.03 1.36 6.03 -2.39 -0.01 1.35 16 31 H 0.09 3.06 8.02 -2.39 -0.02 3.05 16 32 H 0.08 2.93 7.37 -2.39 -0.02 2.91 16 33 H 0.13 4.01 7.71 -2.91 -0.02 3.99 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.15 5.06 8.06 -2.91 -0.02 5.03 16 37 H 0.14 4.99 6.16 -2.91 -0.02 4.97 16 38 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.11 3.75 7.37 -2.91 -0.02 3.73 16 Total: -1.00 -62.48 364.26 4.22 -58.25 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 1.03 Total: 28.00 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 7.03 Total: 2.49 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -5.81 Total: -109.46 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -62.48 4.22 -58.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491303140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.226 kcal (2) G-P(sol) polarization free energy of solvation -62.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds