Wall clock time and date at job start Tue Mar 31 2020 14:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00432 * 3 2 1 5 5 H 1.48499 * 109.46982 * 30.00394 * 3 2 1 6 6 H 1.48497 * 109.46785 * 150.00218 * 3 2 1 7 7 C 1.37879 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99185 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21696 * 120.00639 * 180.02562 * 18 10 9 20 20 C 1.46435 * 119.99784 * 359.97438 * 18 10 9 21 21 C 1.34800 * 120.00168 * 179.97438 * 20 18 10 22 22 C 1.47210 * 120.00252 * 180.02562 * 21 20 18 23 23 C 1.40265 * 120.58550 * 180.02562 * 22 21 20 24 24 C 1.38288 * 118.26401 * 179.97438 * 23 22 21 25 25 C 1.38387 * 119.33455 * 359.97438 * 24 23 22 26 26 N 1.31942 * 121.14203 * 0.02562 * 25 24 23 27 27 C 1.31656 * 121.90061 * 359.67490 * 26 25 24 28 28 H 0.97004 * 120.00262 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 30 30 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 31 31 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 32 32 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.07997 * 119.99832 * 0.02562 * 20 18 10 38 38 H 1.08010 * 119.99904 * 0.02562 * 21 20 18 39 39 H 1.07995 * 120.86884 * 359.95550 * 23 22 21 40 40 H 1.08002 * 120.33036 * 180.02562 * 24 23 22 41 41 H 1.08002 * 119.43254 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.73973 * 180.29316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2697 12 6 2.9875 -3.9766 -1.7040 13 6 2.1214 -3.3562 -2.5847 14 6 0.9710 -4.0203 -2.9814 15 6 0.7286 -5.2852 -2.4673 16 6 1.6406 -5.8420 -1.5911 17 7 2.7273 -5.1827 -1.2392 18 6 4.2250 -3.2103 1.1662 19 8 4.6311 -4.3574 1.1664 20 6 3.9820 -2.5195 2.4343 21 6 4.2067 -3.1548 3.6018 22 6 3.9619 -2.4605 4.8766 23 6 4.1920 -3.1097 6.0985 24 6 3.9466 -2.4122 7.2671 25 6 3.4869 -1.1089 7.1949 26 7 3.2788 -0.5222 6.0315 27 6 3.5024 -1.1403 4.8908 28 1 -0.4851 0.8401 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8744 -0.6799 -0.8912 31 1 5.0455 -3.9927 -1.1395 32 1 4.5313 -2.5396 -2.0296 33 1 2.3397 -2.3678 -2.9614 34 1 0.2780 -3.5617 -3.6713 35 1 -0.1594 -5.8301 -2.7517 36 1 1.4612 -6.8284 -1.1895 37 1 3.6220 -1.5013 2.4342 38 1 4.5663 -4.1732 3.6019 39 1 4.5513 -4.1278 6.1260 40 1 4.1128 -2.8796 8.2264 41 1 3.2951 -0.5625 8.1065 42 1 3.3246 -0.6250 3.9584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:31 Heat of formation + Delta-G solvation = 64.083908 kcal Electronic energy + Delta-G solvation = -26304.671978 eV Core-core repulsion = 22636.532191 eV Total energy + Delta-G solvation = -3668.139787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07741 -39.81601 -38.80772 -35.31312 -34.27146 -32.73045 -32.24364 -31.92839 -31.35247 -29.65276 -28.21056 -26.43684 -24.26527 -23.48136 -23.02511 -22.50417 -21.86691 -20.47015 -18.13763 -17.43382 -17.11662 -16.68630 -16.34801 -15.96436 -15.75706 -15.22578 -15.14029 -14.83103 -14.34406 -13.95957 -13.79975 -13.62675 -13.44567 -13.08118 -12.98070 -12.84048 -12.55470 -12.47121 -12.12645 -11.73618 -11.63680 -11.49680 -11.30529 -10.97911 -10.64080 -10.57777 -10.29756 -9.66440 -9.63078 -9.42321 -9.36008 -9.21081 -8.92755 -8.75483 -8.47567 -8.25669 -7.77747 -6.22462 -4.24127 0.61109 1.26619 1.57916 1.83536 2.22110 3.14820 3.22683 3.26162 3.67504 3.83999 4.10264 4.24032 4.41159 4.48801 4.78266 4.79567 4.84873 4.91972 5.01382 5.07306 5.22413 5.27502 5.39463 5.43937 5.53117 5.60951 5.70189 5.83780 5.85644 5.97174 6.02985 6.11566 6.17733 6.24627 6.35418 6.53542 6.56489 6.63353 6.64791 6.69192 6.80487 7.19068 7.26996 7.40290 8.00391 8.06790 8.37540 8.55933 8.83129 8.91292 9.36083 10.89858 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.004489 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.273210 B = 6236.546312 C = 7911.721319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.205 3.795 10 N -0.582 5.582 11 C 0.172 3.828 12 C 0.120 3.880 13 C -0.127 4.127 14 C -0.079 4.079 15 C -0.178 4.178 16 C 0.086 3.914 17 N -0.461 5.461 18 C 0.548 3.452 19 O -0.548 6.548 20 C -0.160 4.160 21 C -0.061 4.061 22 C -0.105 4.105 23 C -0.064 4.064 24 C -0.176 4.176 25 C 0.093 3.907 26 N -0.482 5.482 27 C 0.115 3.885 28 H 0.266 0.734 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 -4.923 3.792 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.096 0.904 9 C 0.084 3.916 10 N -0.312 5.312 11 C 0.048 3.952 12 C -0.020 4.020 13 C -0.148 4.148 14 C -0.105 4.105 15 C -0.198 4.198 16 C -0.071 4.071 17 N -0.171 5.171 18 C 0.338 3.662 19 O -0.428 6.428 20 C -0.180 4.180 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.090 4.090 24 C -0.196 4.196 25 C -0.064 4.064 26 N -0.190 5.190 27 C -0.043 4.043 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.010 -4.882 4.344 9.583 hybrid contribution -0.528 0.641 -0.575 1.011 sum 6.481 -4.240 3.768 8.613 Atomic orbital electron populations 1.69884 1.06204 1.27086 1.49307 1.24854 0.94662 0.98635 0.94378 0.87025 0.80577 0.84346 0.78893 1.19971 1.20840 1.18757 1.21343 0.88805 0.94948 1.52291 0.90360 1.19942 0.96229 0.77768 0.97707 1.47750 1.64009 1.15308 1.04088 1.20119 0.93352 0.95576 0.86139 1.21533 0.97148 0.90637 0.92649 1.21921 0.94708 1.00125 0.98026 1.21478 0.96442 0.94203 0.98370 1.22029 1.00740 0.96970 1.00079 1.22607 0.90265 0.99408 0.94860 1.67527 1.19581 1.08334 1.21628 1.18138 0.77900 0.85754 0.84401 1.90760 1.47077 1.17240 1.87742 1.23333 1.00694 1.01697 0.92311 1.22053 0.96861 0.99431 0.89800 1.20093 1.01068 0.95513 0.94036 1.21778 0.95817 0.99944 0.91434 1.22045 1.02069 0.96351 0.99139 1.22854 0.94905 0.92533 0.96078 1.67671 1.14786 1.38127 0.98443 1.23300 0.92938 0.91261 0.96769 0.92412 0.94596 0.95108 0.89041 0.89423 0.84819 0.85397 0.85645 0.83655 0.84408 0.84797 0.84514 0.84782 0.82934 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.96 55.43 0.77 -24.39 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 19.16 27.47 -169.99 -4.67 14.49 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 7 C -0.54 -13.47 9.79 -34.44 -0.34 -13.81 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.20 4.30 3.99 -5.20 -0.02 4.28 16 10 N -0.58 -11.71 2.44 -178.08 -0.43 -12.14 16 11 C 0.17 3.11 5.76 -5.19 -0.03 3.08 16 12 C 0.12 2.29 6.36 -82.58 -0.53 1.77 16 13 C -0.13 -2.29 9.57 -39.44 -0.38 -2.67 16 14 C -0.08 -1.29 10.18 -39.28 -0.40 -1.69 16 15 C -0.18 -2.76 10.11 -39.44 -0.40 -3.16 16 16 C 0.09 1.47 11.18 -17.55 -0.20 1.27 16 17 N -0.46 -9.18 10.27 -9.47 -0.10 -9.28 16 18 C 0.55 11.32 7.60 -12.96 -0.10 11.22 16 19 O -0.55 -12.24 15.81 5.19 0.08 -12.16 16 20 C -0.16 -2.94 8.62 -37.50 -0.32 -3.27 16 21 C -0.06 -0.98 9.48 -37.16 -0.35 -1.33 16 22 C -0.11 -1.54 5.88 -104.91 -0.62 -2.16 16 23 C -0.06 -0.76 9.95 -38.80 -0.39 -1.15 16 24 C -0.18 -1.87 10.09 -39.51 -0.40 -2.26 16 25 C 0.09 1.12 11.17 -17.45 -0.19 0.93 16 26 N -0.48 -7.45 10.34 -12.83 -0.13 -7.59 16 27 C 0.11 1.81 10.59 -17.04 -0.18 1.63 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.04 0.74 5.15 -51.93 -0.27 0.47 16 30 H 0.03 0.61 7.32 -51.93 -0.38 0.23 16 31 H 0.09 1.65 7.42 -51.93 -0.39 1.26 16 32 H 0.09 1.32 7.79 -51.93 -0.40 0.92 16 33 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.14 2.54 4.25 -52.49 -0.22 2.31 16 38 H 0.13 2.09 7.52 -52.48 -0.39 1.70 16 39 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.16 2.61 6.19 -52.49 -0.32 2.28 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -32.59 365.25 -8.84 -41.43 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.93 Total: 9.50 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -4.93 Total: -5.37 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.11 Total: -53.40 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.67 Total: 14.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.59 -8.84 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.516 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds