Wall clock time and date at job start Tue Mar 31 2020 14:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99898 * 2 1 4 4 H 1.48502 * 109.47080 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.47400 * 29.99957 * 3 2 1 6 6 H 1.48494 * 109.47194 * 149.99978 * 3 2 1 7 7 C 1.37877 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99960 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00105 * 89.99393 * 10 9 7 12 12 C 1.50700 * 109.47258 * 269.99996 * 11 10 9 13 13 C 1.38227 * 119.61466 * 94.98081 * 12 11 10 14 14 C 1.38630 * 119.16103 * 179.78946 * 13 12 11 15 15 C 1.38682 * 118.41589 * 0.47776 * 14 13 12 16 16 C 1.38179 * 119.16583 * 359.49683 * 15 14 13 17 17 N 1.31851 * 119.61902 * 274.99897 * 12 11 10 18 18 C 1.34777 * 119.99625 * 269.99620 * 10 9 7 19 19 O 1.21703 * 119.99849 * 179.97438 * 18 10 9 20 20 C 1.46419 * 120.00357 * 359.97438 * 18 10 9 21 21 C 1.34807 * 120.00199 * 173.23556 * 20 18 10 22 22 C 1.47206 * 120.00144 * 349.10628 * 21 20 18 23 23 C 1.40271 * 120.58560 * 136.51202 * 22 21 20 24 24 C 1.38284 * 118.26790 * 180.02562 * 23 22 21 25 25 C 1.38390 * 119.33179 * 0.02562 * 24 23 22 26 26 N 1.31940 * 121.14187 * 359.97438 * 25 24 23 27 27 C 1.31661 * 121.90493 * 359.70429 * 26 25 24 28 28 H 0.96996 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47367 * 59.99155 * 9 7 2 30 30 H 1.09009 * 109.46919 * 299.99807 * 9 7 2 31 31 H 1.08998 * 109.46962 * 150.00214 * 11 10 9 32 32 H 1.08998 * 109.47121 * 30.00424 * 11 10 9 33 33 H 1.08002 * 120.42413 * 359.97438 * 13 12 11 34 34 H 1.07992 * 120.79207 * 180.23044 * 14 13 12 35 35 H 1.07997 * 120.41321 * 179.78691 * 15 14 13 36 36 H 1.07993 * 119.61971 * 180.25497 * 16 15 14 37 37 H 1.08002 * 119.99921 * 353.23657 * 20 18 10 38 38 H 1.08005 * 119.99873 * 169.11381 * 21 20 18 39 39 H 1.07999 * 120.86326 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.33107 * 180.02562 * 24 23 22 41 41 H 1.08006 * 119.42608 * 179.97438 * 25 24 23 42 42 H 1.07993 * 119.74153 * 180.31153 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6792 -4.1693 1.2692 12 6 3.9224 -3.4370 1.7041 13 6 3.8178 -2.3769 2.5851 14 6 4.9679 -1.7127 2.9823 15 6 6.1848 -2.1351 2.4685 16 6 6.2114 -3.2031 1.5921 17 7 5.0972 -3.8145 1.2397 18 6 2.6409 -4.1249 -1.1667 19 8 3.4321 -5.0496 -1.1668 20 6 2.1647 -3.5688 -2.4347 21 6 2.7025 -3.9864 -3.5982 22 6 3.9205 -4.8131 -3.5913 23 6 4.0296 -5.9303 -4.4325 24 6 5.1949 -6.6733 -4.3865 25 6 6.2062 -6.2955 -3.5205 26 7 6.0770 -5.2396 -2.7400 27 6 4.9909 -4.4956 -2.7500 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8895 30 1 0.6241 -2.5567 0.8904 31 1 2.9075 -5.2271 1.1389 32 1 1.9059 -4.0555 2.0289 33 1 2.8525 -2.0719 2.9615 34 1 4.9170 -0.8835 3.6723 35 1 7.1005 -1.6386 2.7534 36 1 7.1554 -3.5408 1.1908 37 1 1.3825 -2.8241 -2.4379 38 1 2.2398 -3.7144 -4.5354 39 1 3.2242 -6.2034 -5.0980 40 1 5.3147 -7.5397 -5.0200 41 1 7.1168 -6.8750 -3.4831 42 1 4.9244 -3.6359 -2.0998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491492900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:34 Heat of formation + Delta-G solvation = 71.851398 kcal Electronic energy + Delta-G solvation = -27243.350271 eV Core-core repulsion = 23575.547308 eV Total energy + Delta-G solvation = -3667.802963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06295 -39.61919 -38.58967 -35.29883 -33.80444 -32.76891 -31.95287 -31.73633 -31.28483 -29.46426 -27.66670 -26.24549 -23.87858 -23.15731 -23.00956 -22.79175 -21.94025 -20.57039 -17.96384 -17.03222 -16.76019 -16.56726 -16.26354 -15.84456 -15.55877 -15.38721 -15.07612 -14.63653 -14.19532 -13.91295 -13.66338 -13.29152 -13.06419 -12.94683 -12.71395 -12.69835 -12.50849 -12.43378 -11.99584 -11.68818 -11.42649 -11.30421 -11.24734 -10.96315 -10.76677 -10.22361 -9.84202 -9.81588 -9.43666 -9.33488 -9.22763 -8.90422 -8.80759 -8.64152 -8.47254 -7.79327 -7.72748 -6.22830 -4.28773 1.06130 1.55648 1.74183 1.79660 2.22409 3.18410 3.26347 3.30284 3.82492 4.05120 4.28879 4.32224 4.48201 4.80870 4.84968 5.10341 5.10712 5.18751 5.20381 5.25106 5.28693 5.33315 5.48738 5.51481 5.62821 5.82999 5.89670 5.93663 5.99065 6.17707 6.20611 6.25286 6.37831 6.45804 6.58169 6.62908 6.64638 6.74806 6.75857 7.11621 7.13977 7.17607 7.48624 7.72776 8.00772 8.27782 8.47350 8.56578 8.77018 9.01911 9.39120 10.83728 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.005344 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.477231 B = 5238.510191 C = 6584.410854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.584 5.584 11 C 0.171 3.829 12 C 0.123 3.877 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.181 4.181 16 C 0.090 3.910 17 N -0.455 5.455 18 C 0.537 3.463 19 O -0.542 6.542 20 C -0.166 4.166 21 C -0.066 4.066 22 C -0.104 4.104 23 C -0.070 4.070 24 C -0.193 4.193 25 C 0.093 3.907 26 N -0.490 5.490 27 C 0.192 3.808 28 H 0.265 0.735 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -6.975 -1.920 9.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.115 3.885 10 N -0.313 5.313 11 C 0.047 3.953 12 C -0.016 4.016 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.202 4.202 16 C -0.068 4.068 17 N -0.164 5.164 18 C 0.327 3.673 19 O -0.422 6.422 20 C -0.186 4.186 21 C -0.086 4.086 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.213 4.213 25 C -0.062 4.062 26 N -0.199 5.199 27 C 0.034 3.966 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.050 -7.825 -1.899 10.703 hybrid contribution -0.453 1.893 0.126 1.950 sum 6.597 -5.932 -1.773 9.048 Atomic orbital electron populations 1.69912 1.05890 1.27238 1.50005 1.24880 0.94743 0.99035 0.94890 0.86615 0.79954 0.83304 0.78409 1.20516 1.21112 1.19816 1.21435 0.93458 0.90212 1.51460 0.92267 1.19549 0.87430 0.82765 0.98769 1.48149 1.44619 1.34790 1.03785 1.20085 0.91166 0.97469 0.86570 1.21608 0.93669 0.93959 0.92402 1.21974 0.99424 0.95711 0.98241 1.21483 0.92582 0.98496 0.98520 1.22039 0.98529 0.99317 1.00278 1.22661 0.96783 0.92761 0.94591 1.67596 0.98017 1.29271 1.21556 1.18390 0.81038 0.83127 0.84728 1.90802 1.34165 1.30009 1.87228 1.23451 1.02977 1.00113 0.92056 1.22101 0.93377 0.95380 0.97784 1.19927 0.95708 0.96953 0.98047 1.21516 0.97169 0.93774 0.97117 1.21815 0.95405 1.01667 1.02451 1.22648 0.98095 0.93604 0.91858 1.67597 1.25513 1.05959 1.20831 1.22726 0.86784 0.96486 0.90630 0.92560 0.94073 0.94563 0.89334 0.89578 0.84718 0.85564 0.85737 0.83552 0.83567 0.85026 0.85571 0.85719 0.83850 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.53 -12.90 9.23 -34.44 -0.32 -13.22 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.23 5.20 4.96 -5.19 -0.03 5.18 16 10 N -0.58 -11.83 2.44 -178.08 -0.43 -12.27 16 11 C 0.17 3.17 5.76 -5.19 -0.03 3.14 16 12 C 0.12 2.32 6.36 -82.59 -0.53 1.79 16 13 C -0.13 -2.33 9.57 -39.44 -0.38 -2.71 16 14 C -0.08 -1.33 10.18 -39.27 -0.40 -1.73 16 15 C -0.18 -2.72 10.11 -39.44 -0.40 -3.12 16 16 C 0.09 1.50 11.18 -17.55 -0.20 1.30 16 17 N -0.46 -8.88 10.27 -9.48 -0.10 -8.98 16 18 C 0.54 10.93 6.67 -12.97 -0.09 10.84 16 19 O -0.54 -11.77 11.71 5.19 0.06 -11.71 16 20 C -0.17 -3.01 9.15 -37.51 -0.34 -3.35 16 21 C -0.07 -1.04 9.84 -37.16 -0.37 -1.41 16 22 C -0.10 -1.76 4.55 -104.91 -0.48 -2.23 16 23 C -0.07 -1.01 9.95 -38.80 -0.39 -1.39 16 24 C -0.19 -2.60 10.09 -39.51 -0.40 -3.00 16 25 C 0.09 1.41 11.17 -17.45 -0.19 1.22 16 26 N -0.49 -9.07 10.34 -12.83 -0.13 -9.20 16 27 C 0.19 3.66 7.78 -17.04 -0.13 3.53 16 28 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.04 0.94 6.02 -51.93 -0.31 0.63 16 30 H 0.04 0.83 7.90 -51.92 -0.41 0.42 16 31 H 0.09 1.67 7.42 -51.93 -0.39 1.29 16 32 H 0.09 1.40 7.79 -51.93 -0.40 0.99 16 33 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 34 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.15 2.69 6.15 -52.49 -0.32 2.37 16 38 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.14 1.72 8.06 -52.48 -0.42 1.29 16 42 H 0.14 3.05 7.02 -52.49 -0.37 2.68 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -30.24 363.81 -9.29 -39.53 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.13 Total: 8.26 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -4.75 Total: -3.56 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.07 Total: -53.14 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.06 Total: -11.71 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.24 -9.29 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.384 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds