Wall clock time and date at job start Tue Mar 31 2020 14:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99898 * 2 1 4 4 H 1.48502 * 109.47080 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.47400 * 29.99957 * 3 2 1 6 6 H 1.48494 * 109.47194 * 149.99978 * 3 2 1 7 7 C 1.37877 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99960 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00105 * 89.99393 * 10 9 7 12 12 C 1.50700 * 109.47258 * 269.99996 * 11 10 9 13 13 C 1.38227 * 119.61466 * 94.98081 * 12 11 10 14 14 C 1.38630 * 119.16103 * 179.78946 * 13 12 11 15 15 C 1.38682 * 118.41589 * 0.47776 * 14 13 12 16 16 C 1.38179 * 119.16583 * 359.49683 * 15 14 13 17 17 N 1.31851 * 119.61902 * 274.99897 * 12 11 10 18 18 C 1.34777 * 119.99625 * 269.99620 * 10 9 7 19 19 O 1.21703 * 119.99849 * 179.97438 * 18 10 9 20 20 C 1.46419 * 120.00357 * 359.97438 * 18 10 9 21 21 C 1.34807 * 120.00199 * 173.23556 * 20 18 10 22 22 C 1.47206 * 120.00144 * 349.10628 * 21 20 18 23 23 C 1.40271 * 120.58560 * 136.51202 * 22 21 20 24 24 C 1.38284 * 118.26790 * 180.02562 * 23 22 21 25 25 C 1.38390 * 119.33179 * 0.02562 * 24 23 22 26 26 N 1.31940 * 121.14187 * 359.97438 * 25 24 23 27 27 C 1.31661 * 121.90493 * 359.70429 * 26 25 24 28 28 H 0.96996 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47367 * 59.99155 * 9 7 2 30 30 H 1.09009 * 109.46919 * 299.99807 * 9 7 2 31 31 H 1.08998 * 109.46962 * 150.00214 * 11 10 9 32 32 H 1.08998 * 109.47121 * 30.00424 * 11 10 9 33 33 H 1.08002 * 120.42413 * 359.97438 * 13 12 11 34 34 H 1.07992 * 120.79207 * 180.23044 * 14 13 12 35 35 H 1.07997 * 120.41321 * 179.78691 * 15 14 13 36 36 H 1.07993 * 119.61971 * 180.25497 * 16 15 14 37 37 H 1.08002 * 119.99921 * 353.23657 * 20 18 10 38 38 H 1.08005 * 119.99873 * 169.11381 * 21 20 18 39 39 H 1.07999 * 120.86326 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.33107 * 180.02562 * 24 23 22 41 41 H 1.08006 * 119.42608 * 179.97438 * 25 24 23 42 42 H 1.07993 * 119.74153 * 180.31153 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6792 -4.1693 1.2692 12 6 3.9224 -3.4370 1.7041 13 6 3.8178 -2.3769 2.5851 14 6 4.9679 -1.7127 2.9823 15 6 6.1848 -2.1351 2.4685 16 6 6.2114 -3.2031 1.5921 17 7 5.0972 -3.8145 1.2397 18 6 2.6409 -4.1249 -1.1667 19 8 3.4321 -5.0496 -1.1668 20 6 2.1647 -3.5688 -2.4347 21 6 2.7025 -3.9864 -3.5982 22 6 3.9205 -4.8131 -3.5913 23 6 4.0296 -5.9303 -4.4325 24 6 5.1949 -6.6733 -4.3865 25 6 6.2062 -6.2955 -3.5205 26 7 6.0770 -5.2396 -2.7400 27 6 4.9909 -4.4956 -2.7500 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8895 30 1 0.6241 -2.5567 0.8904 31 1 2.9075 -5.2271 1.1389 32 1 1.9059 -4.0555 2.0289 33 1 2.8525 -2.0719 2.9615 34 1 4.9170 -0.8835 3.6723 35 1 7.1005 -1.6386 2.7534 36 1 7.1554 -3.5408 1.1908 37 1 1.3825 -2.8241 -2.4379 38 1 2.2398 -3.7144 -4.5354 39 1 3.2242 -6.2034 -5.0980 40 1 5.3147 -7.5397 -5.0200 41 1 7.1168 -6.8750 -3.4831 42 1 4.9244 -3.6359 -2.0998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491492900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:34 Heat of formation + Delta-G solvation = 55.181838 kcal Electronic energy + Delta-G solvation = -27244.073117 eV Core-core repulsion = 23575.547308 eV Total energy + Delta-G solvation = -3668.525810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45466 -40.90929 -40.01323 -36.88707 -35.21553 -34.55146 -33.31749 -32.97840 -32.65814 -30.74924 -29.41254 -27.74413 -25.29925 -24.76455 -24.27304 -24.19513 -23.27547 -21.92333 -19.45995 -18.59541 -18.44286 -17.91084 -17.58352 -17.24567 -16.89802 -16.82630 -16.45559 -16.33871 -15.52887 -15.40569 -15.00011 -14.66360 -14.38800 -14.31803 -14.17741 -14.04916 -13.86920 -13.81722 -13.60290 -13.25218 -13.09344 -12.75394 -12.67151 -12.54269 -12.43876 -12.02101 -11.69398 -11.17085 -10.86255 -10.68551 -10.55614 -10.46876 -10.26622 -10.11864 -9.85008 -9.36507 -9.10730 -8.17094 -6.27840 -0.23427 0.24081 0.49121 0.55327 0.93801 1.37164 1.41604 1.49054 2.29235 2.46228 2.55347 3.06883 3.10241 3.14211 3.48377 3.64032 3.81219 3.89595 3.98100 4.05833 4.10269 4.15353 4.25933 4.31891 4.34729 4.51623 4.60764 4.63618 4.74857 4.82783 4.91881 4.94086 4.96710 5.12703 5.21923 5.26697 5.29854 5.35093 5.42782 5.50218 5.70705 5.86243 5.89415 5.95739 6.10656 6.60885 6.86451 7.22556 7.22852 7.37652 7.49824 8.88236 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.005344 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.477231 B = 5238.510191 C = 6584.410854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.040 0.960 9 C 0.251 3.749 10 N -0.588 5.588 11 C 0.171 3.829 12 C 0.103 3.897 13 C -0.146 4.146 14 C -0.088 4.088 15 C -0.170 4.170 16 C 0.074 3.926 17 N -0.489 5.489 18 C 0.533 3.467 19 O -0.560 6.560 20 C -0.202 4.202 21 C -0.032 4.032 22 C -0.127 4.127 23 C -0.065 4.065 24 C -0.181 4.181 25 C 0.082 3.918 26 N -0.523 5.523 27 C 0.172 3.828 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.171 -7.356 -3.246 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.058 0.942 9 C 0.130 3.870 10 N -0.318 5.318 11 C 0.047 3.953 12 C -0.035 4.035 13 C -0.167 4.167 14 C -0.114 4.114 15 C -0.190 4.190 16 C -0.083 4.083 17 N -0.198 5.198 18 C 0.324 3.676 19 O -0.441 6.441 20 C -0.223 4.223 21 C -0.052 4.052 22 C -0.129 4.129 23 C -0.090 4.090 24 C -0.201 4.201 25 C -0.073 4.073 26 N -0.233 5.233 27 C 0.014 3.986 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.157 0.843 38 H 0.189 0.811 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.103 -8.206 -3.216 11.972 hybrid contribution -0.624 1.883 0.461 2.036 sum 7.479 -6.323 -2.756 10.174 Atomic orbital electron populations 1.69981 1.06781 1.27847 1.51046 1.25407 0.95317 1.01349 0.94880 0.85835 0.78845 0.80543 0.78176 1.20573 1.20514 1.20008 1.21414 0.92424 0.91284 1.50691 0.94207 1.19212 0.87316 0.82676 0.97788 1.48115 1.44562 1.34448 1.04644 1.20149 0.91962 0.96804 0.86378 1.21594 0.93539 0.94942 0.93471 1.22071 1.00351 0.95812 0.98436 1.21886 0.92124 0.98810 0.98570 1.22408 0.99808 0.98145 0.98589 1.23074 0.96674 0.93456 0.95134 1.67538 0.98923 1.30758 1.22619 1.18759 0.80567 0.82902 0.85326 1.90783 1.34893 1.30892 1.87559 1.23306 1.04654 1.02237 0.92081 1.22532 0.91785 0.92486 0.98421 1.20063 0.95352 0.98603 0.98852 1.21983 0.98467 0.92278 0.96275 1.22290 0.94079 1.02140 1.01554 1.23254 0.99894 0.92746 0.91420 1.67495 1.25893 1.07421 1.22460 1.22278 0.88439 0.96398 0.91502 0.92453 0.94731 0.95562 0.90411 0.88034 0.84776 0.82675 0.81930 0.81989 0.84261 0.81052 0.81942 0.81398 0.80966 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.58 13.29 21.45 0.28 -48.30 16 2 C 0.03 1.57 5.46 84.65 0.46 2.03 16 3 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.52 -26.08 9.23 25.60 0.24 -25.84 16 8 H 0.04 2.14 7.81 -2.92 -0.02 2.12 16 9 C 0.25 11.56 4.96 85.63 0.42 11.99 16 10 N -0.59 -25.04 2.44 -835.54 -2.04 -27.08 16 11 C 0.17 6.67 5.76 85.63 0.49 7.16 16 12 C 0.10 4.05 6.36 42.55 0.27 4.32 16 13 C -0.15 -5.20 9.57 22.36 0.21 -4.99 16 14 C -0.09 -2.66 10.18 22.47 0.23 -2.43 16 15 C -0.17 -4.82 10.11 22.36 0.23 -4.60 16 16 C 0.07 2.49 11.18 84.67 0.95 3.43 16 17 N -0.49 -19.79 10.27 -183.89 -1.89 -21.67 16 18 C 0.53 22.69 6.67 86.37 0.58 23.26 16 19 O -0.56 -25.36 11.71 -4.36 -0.05 -25.41 16 20 C -0.20 -7.55 9.15 23.61 0.22 -7.34 16 21 C -0.03 -0.99 9.84 23.84 0.23 -0.75 16 22 C -0.13 -4.15 4.55 -20.05 -0.09 -4.24 16 23 C -0.06 -1.65 9.95 22.78 0.23 -1.42 16 24 C -0.18 -4.21 10.09 22.32 0.23 -3.99 16 25 C 0.08 2.32 11.17 84.71 0.95 3.27 16 26 N -0.52 -19.48 10.34 -194.51 -2.01 -21.50 16 27 C 0.17 6.71 7.78 85.10 0.66 7.38 16 28 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.03 1.65 6.02 -2.39 -0.01 1.63 16 30 H 0.03 1.26 7.90 -2.38 -0.02 1.24 16 31 H 0.08 3.14 7.42 -2.39 -0.02 3.12 16 32 H 0.10 3.48 7.79 -2.39 -0.02 3.47 16 33 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.16 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.14 5.32 6.15 -2.91 -0.02 5.30 16 38 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.11 4.84 7.02 -2.91 -0.02 4.82 16 Total: -1.00 -68.03 363.81 3.85 -64.18 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 1.03 Total: 29.13 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 6.50 Total: 7.24 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.65 Total: -118.55 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -68.03 3.85 -64.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491492900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.361 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds