Wall clock time and date at job start Tue Mar 31 2020 14:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00432 * 3 2 1 5 5 H 1.48499 * 109.46982 * 30.00394 * 3 2 1 6 6 H 1.48497 * 109.46785 * 150.00218 * 3 2 1 7 7 C 1.37879 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99185 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21660 * 120.00535 * 180.02562 * 18 10 9 20 20 C 1.46657 * 119.99693 * 0.02562 * 18 10 9 21 21 C 1.34637 * 120.00244 * 179.97438 * 20 18 10 22 22 C 1.47401 * 120.00453 * 180.02562 * 21 20 18 23 23 C 1.40134 * 120.94553 * 359.72016 * 22 21 20 24 24 C 1.38004 * 118.96643 * 179.77590 * 23 22 21 25 25 N 1.31883 * 120.92222 * 0.51442 * 24 23 22 26 26 C 1.31886 * 122.11507 * 359.73362 * 25 24 23 27 27 C 1.38001 * 120.92226 * 0.02562 * 26 25 24 28 28 H 0.97004 * 120.00262 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 30 30 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 31 31 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 32 32 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.08002 * 120.00329 * 0.02562 * 20 18 10 38 38 H 1.08002 * 119.99427 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.51818 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.53767 * 180.22728 * 24 23 22 41 41 H 1.07998 * 119.53565 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.51292 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2697 12 6 2.9875 -3.9766 -1.7040 13 6 2.1214 -3.3562 -2.5847 14 6 0.9710 -4.0203 -2.9814 15 6 0.7286 -5.2852 -2.4673 16 6 1.6406 -5.8420 -1.5911 17 7 2.7273 -5.1827 -1.2392 18 6 4.2250 -3.2103 1.1662 19 8 4.6310 -4.3571 1.1664 20 6 3.9805 -2.5188 2.4362 21 6 4.2049 -3.1533 3.6023 22 6 3.9587 -2.4585 4.8788 23 6 3.4967 -1.1358 4.9018 24 6 3.2754 -0.5262 6.1201 25 7 3.5023 -1.1676 7.2499 26 6 3.9419 -2.4108 7.2744 27 6 4.1860 -3.0998 6.1039 28 1 -0.4851 0.8401 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8744 -0.6799 -0.8912 31 1 5.0455 -3.9927 -1.1395 32 1 4.5313 -2.5396 -2.0296 33 1 2.3397 -2.3678 -2.9614 34 1 0.2780 -3.5617 -3.6713 35 1 -0.1594 -5.8301 -2.7517 36 1 1.4612 -6.8284 -1.1895 37 1 3.6197 -1.5008 2.4362 38 1 4.5654 -4.1714 3.6023 39 1 3.3135 -0.6027 3.9806 40 1 2.9158 0.4917 6.1486 41 1 4.1133 -2.8963 8.2237 42 1 4.5456 -4.1178 6.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491493252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:38 Heat of formation + Delta-G solvation = 63.877585 kcal Electronic energy + Delta-G solvation = -26293.979989 eV Core-core repulsion = 22625.831255 eV Total energy + Delta-G solvation = -3668.148734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.06501 -39.83580 -38.85577 -35.37801 -34.54180 -32.77462 -31.97435 -31.50324 -31.21568 -30.22962 -28.26364 -26.54404 -24.36392 -23.37784 -23.05181 -22.54531 -21.88819 -20.50124 -18.15968 -17.42674 -17.15435 -16.38381 -16.27047 -15.92813 -15.68271 -15.46639 -15.20130 -15.15180 -14.39589 -13.95746 -13.78864 -13.63682 -13.43316 -13.22390 -12.93503 -12.85111 -12.58809 -12.53606 -12.17401 -11.85605 -11.64868 -11.36244 -11.21817 -11.01723 -10.79857 -10.65019 -10.35018 -9.71082 -9.48873 -9.40883 -9.26351 -9.13780 -8.95416 -8.80585 -8.54688 -8.49306 -7.83590 -6.27210 -4.29009 0.65413 1.18559 1.55390 1.81096 2.26861 3.09334 3.16821 3.20402 3.62839 3.83073 4.06648 4.18578 4.39732 4.47679 4.69566 4.76673 4.79988 5.01858 5.08905 5.15950 5.20214 5.25375 5.38826 5.46371 5.51994 5.63209 5.67533 5.80849 5.84769 5.94036 6.01425 6.09622 6.14951 6.21988 6.31166 6.51411 6.52509 6.60961 6.66614 6.69412 6.76637 7.16464 7.22107 7.35288 7.99405 8.01680 8.32640 8.53357 8.78162 8.86149 9.31022 10.85080 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010348 B = 0.004462 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.216154 B = 6273.730377 C = 7949.129337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.205 3.795 10 N -0.581 5.581 11 C 0.172 3.828 12 C 0.119 3.881 13 C -0.127 4.127 14 C -0.079 4.079 15 C -0.178 4.178 16 C 0.086 3.914 17 N -0.462 5.462 18 C 0.546 3.454 19 O -0.546 6.546 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.009 4.009 23 C -0.160 4.160 24 C 0.100 3.900 25 N -0.492 5.492 26 C 0.094 3.906 27 C -0.162 4.162 28 H 0.266 0.734 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 -3.951 1.789 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.097 0.903 9 C 0.083 3.917 10 N -0.311 5.311 11 C 0.048 3.952 12 C -0.020 4.020 13 C -0.148 4.148 14 C -0.105 4.105 15 C -0.198 4.198 16 C -0.071 4.071 17 N -0.171 5.171 18 C 0.336 3.664 19 O -0.425 6.425 20 C -0.169 4.169 21 C -0.093 4.093 22 C -0.017 4.017 23 C -0.179 4.179 24 C -0.057 4.057 25 N -0.201 5.201 26 C -0.063 4.063 27 C -0.182 4.182 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.779 -4.345 3.144 8.644 hybrid contribution -0.683 1.100 -1.498 1.980 sum 6.096 -3.245 1.646 7.100 Atomic orbital electron populations 1.69886 1.06188 1.27093 1.49273 1.24859 0.94661 0.98624 0.94416 0.87028 0.80468 0.84310 0.79030 1.19906 1.20854 1.18817 1.21348 0.88794 0.94975 1.52281 0.90344 1.19943 0.96238 0.77770 0.97699 1.47753 1.63950 1.15313 1.04100 1.20126 0.93390 0.95595 0.86084 1.21523 0.97133 0.90655 0.92697 1.21919 0.94711 1.00128 0.98028 1.21480 0.96439 0.94204 0.98360 1.22033 1.00744 0.96961 1.00045 1.22611 0.90243 0.99414 0.94847 1.67527 1.19589 1.08322 1.21647 1.18195 0.78000 0.85779 0.84408 1.90757 1.46898 1.17197 1.87695 1.23423 0.99457 1.01660 0.92323 1.22146 0.97570 0.99677 0.89906 1.19450 0.95263 0.93474 0.93507 1.22564 0.99738 0.95179 1.00457 1.22690 0.95643 0.99947 0.87379 1.67567 1.11914 1.09682 1.30954 1.22634 0.95171 0.90497 0.97969 1.22330 1.01830 1.01457 0.92539 0.92390 0.94646 0.95071 0.89011 0.89387 0.84824 0.85381 0.85618 0.83628 0.84281 0.84595 0.83919 0.82589 0.82838 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.96 55.43 0.77 -23.92 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 18.60 27.47 -169.99 -4.67 13.93 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.26 -5.26 6.54 56.52 0.37 -4.90 16 7 C -0.54 -13.24 9.79 -34.44 -0.34 -13.57 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 C 0.20 4.22 3.99 -5.20 -0.02 4.20 16 10 N -0.58 -11.53 2.44 -178.00 -0.43 -11.96 16 11 C 0.17 3.07 5.76 -5.19 -0.03 3.04 16 12 C 0.12 2.26 6.36 -82.58 -0.53 1.73 16 13 C -0.13 -2.26 9.57 -39.44 -0.38 -2.64 16 14 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 16 15 C -0.18 -2.72 10.11 -39.44 -0.40 -3.12 16 16 C 0.09 1.45 11.18 -17.55 -0.20 1.26 16 17 N -0.46 -9.10 10.27 -9.47 -0.10 -9.20 16 18 C 0.55 11.15 7.61 -12.86 -0.10 11.06 16 19 O -0.55 -12.09 15.81 5.22 0.08 -12.01 16 20 C -0.15 -2.67 8.63 -37.46 -0.32 -2.99 16 21 C -0.07 -1.17 9.50 -37.13 -0.35 -1.52 16 22 C -0.01 -0.13 5.90 -104.75 -0.62 -0.75 16 23 C -0.16 -2.30 9.49 -38.96 -0.37 -2.67 16 24 C 0.10 1.35 11.17 -17.62 -0.20 1.15 16 25 N -0.49 -6.88 10.34 -13.35 -0.14 -7.02 16 26 C 0.09 1.13 11.17 -17.62 -0.20 0.94 16 27 C -0.16 -1.99 9.90 -38.96 -0.39 -2.38 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 0.71 5.15 -51.93 -0.27 0.44 16 30 H 0.03 0.61 7.32 -51.93 -0.38 0.23 16 31 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 32 H 0.09 1.30 7.79 -51.93 -0.40 0.90 16 33 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 37 H 0.14 2.50 4.32 -52.49 -0.23 2.28 16 38 H 0.14 2.12 7.52 -52.49 -0.39 1.73 16 39 H 0.14 2.04 6.30 -52.48 -0.33 1.70 16 40 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -31.95 365.42 -8.84 -40.78 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.94 Total: 9.95 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.92 Total: -6.06 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.10 Total: -52.10 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.67 Total: 13.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.95 -8.84 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.662 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds