Wall clock time and date at job start Tue Mar 31 2020 14:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00432 * 3 2 1 5 5 H 1.48499 * 109.46982 * 30.00394 * 3 2 1 6 6 H 1.48497 * 109.46785 * 150.00218 * 3 2 1 7 7 C 1.37879 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99185 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21660 * 120.00535 * 180.02562 * 18 10 9 20 20 C 1.46657 * 119.99693 * 0.02562 * 18 10 9 21 21 C 1.34637 * 120.00244 * 179.97438 * 20 18 10 22 22 C 1.47401 * 120.00453 * 180.02562 * 21 20 18 23 23 C 1.40134 * 120.94553 * 359.72016 * 22 21 20 24 24 C 1.38004 * 118.96643 * 179.77590 * 23 22 21 25 25 N 1.31883 * 120.92222 * 0.51442 * 24 23 22 26 26 C 1.31886 * 122.11507 * 359.73362 * 25 24 23 27 27 C 1.38001 * 120.92226 * 0.02562 * 26 25 24 28 28 H 0.97004 * 120.00262 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 30 30 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 31 31 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 32 32 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.08002 * 120.00329 * 0.02562 * 20 18 10 38 38 H 1.08002 * 119.99427 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.51818 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.53767 * 180.22728 * 24 23 22 41 41 H 1.07998 * 119.53565 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.51292 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2697 12 6 2.9875 -3.9766 -1.7040 13 6 2.1214 -3.3562 -2.5847 14 6 0.9710 -4.0203 -2.9814 15 6 0.7286 -5.2852 -2.4673 16 6 1.6406 -5.8420 -1.5911 17 7 2.7273 -5.1827 -1.2392 18 6 4.2250 -3.2103 1.1662 19 8 4.6310 -4.3571 1.1664 20 6 3.9805 -2.5188 2.4362 21 6 4.2049 -3.1533 3.6023 22 6 3.9587 -2.4585 4.8788 23 6 3.4967 -1.1358 4.9018 24 6 3.2754 -0.5262 6.1201 25 7 3.5023 -1.1676 7.2499 26 6 3.9419 -2.4108 7.2744 27 6 4.1860 -3.0998 6.1039 28 1 -0.4851 0.8401 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8744 -0.6799 -0.8912 31 1 5.0455 -3.9927 -1.1395 32 1 4.5313 -2.5396 -2.0296 33 1 2.3397 -2.3678 -2.9614 34 1 0.2780 -3.5617 -3.6713 35 1 -0.1594 -5.8301 -2.7517 36 1 1.4612 -6.8284 -1.1895 37 1 3.6197 -1.5008 2.4362 38 1 4.5654 -4.1714 3.6023 39 1 3.3135 -0.6027 3.9806 40 1 2.9158 0.4917 6.1486 41 1 4.1133 -2.8963 8.2237 42 1 4.5456 -4.1178 6.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491493252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:37 Heat of formation + Delta-G solvation = 45.112715 kcal Electronic energy + Delta-G solvation = -26294.793695 eV Core-core repulsion = 22625.831255 eV Total energy + Delta-G solvation = -3668.962440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36195 -41.00438 -40.30555 -36.94475 -35.80712 -34.59719 -33.36124 -32.87455 -32.25693 -31.45493 -29.99411 -27.96095 -25.62428 -24.58725 -24.38232 -24.12346 -23.20628 -21.77573 -19.61330 -19.06616 -18.72517 -17.76487 -17.52674 -17.19687 -16.96227 -16.73432 -16.55226 -16.38071 -16.00786 -15.45563 -14.98800 -14.89869 -14.71758 -14.52103 -14.30983 -14.24618 -14.05676 -13.93721 -13.73353 -13.26698 -13.10158 -12.73225 -12.63482 -12.42369 -12.21298 -11.99829 -11.95191 -11.65609 -10.93826 -10.72533 -10.68130 -10.52568 -10.33762 -10.13667 -9.88194 -9.80546 -9.39294 -8.23244 -6.29368 -0.56073 0.18293 0.22962 0.48078 1.01300 1.41760 1.44575 1.52461 2.17129 2.37283 2.43715 2.93143 3.04225 3.10846 3.40696 3.48316 3.56923 3.73864 3.87084 4.00418 4.05055 4.10787 4.16158 4.24147 4.29334 4.32663 4.50086 4.58886 4.65252 4.70661 4.80508 4.82023 4.86591 4.92051 4.95083 4.97775 5.22069 5.30331 5.35458 5.47175 5.49458 5.68529 5.71820 5.88087 6.22850 6.58054 6.76807 6.97999 7.18725 7.24997 7.37318 8.92608 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010348 B = 0.004462 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.216154 B = 6273.730377 C = 7949.129337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.026 0.974 9 C 0.210 3.790 10 N -0.583 5.583 11 C 0.167 3.833 12 C 0.099 3.901 13 C -0.143 4.143 14 C -0.088 4.088 15 C -0.171 4.171 16 C 0.071 3.929 17 N -0.497 5.497 18 C 0.541 3.459 19 O -0.573 6.573 20 C -0.182 4.182 21 C -0.041 4.041 22 C -0.033 4.033 23 C -0.169 4.169 24 C 0.092 3.908 25 N -0.506 5.506 26 C 0.094 3.906 27 C -0.152 4.152 28 H 0.265 0.735 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.175 0.825 41 H 0.190 0.810 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -3.493 2.662 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.158 1.158 7 C -0.560 4.560 8 H 0.044 0.956 9 C 0.089 3.911 10 N -0.313 5.313 11 C 0.044 3.956 12 C -0.040 4.040 13 C -0.163 4.163 14 C -0.114 4.114 15 C -0.191 4.191 16 C -0.086 4.086 17 N -0.207 5.207 18 C 0.332 3.668 19 O -0.455 6.455 20 C -0.204 4.204 21 C -0.061 4.061 22 C -0.041 4.041 23 C -0.189 4.189 24 C -0.063 4.063 25 N -0.215 5.215 26 C -0.063 4.063 27 C -0.171 4.171 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.192 0.808 41 H 0.207 0.793 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.736 -3.891 4.003 9.540 hybrid contribution -1.043 0.801 -1.656 2.115 sum 6.693 -3.090 2.348 7.737 Atomic orbital electron populations 1.70055 1.08345 1.27984 1.51654 1.25659 0.95246 1.02492 0.94010 0.85967 0.80051 0.78975 0.79603 1.18965 1.21631 1.15791 1.21324 0.90734 0.92800 1.51117 0.95592 1.19849 0.93460 0.78731 0.99107 1.47784 1.63580 1.15107 1.04780 1.20328 0.93081 0.96149 0.86034 1.21672 0.97881 0.90935 0.93466 1.22070 0.95438 1.00485 0.98339 1.21882 0.96271 0.94694 0.98595 1.22417 1.01323 0.96656 0.98667 1.23134 0.89947 1.00384 0.95168 1.67507 1.21247 1.09132 1.22815 1.18581 0.77403 0.85608 0.85234 1.90723 1.48434 1.18211 1.88121 1.23259 1.03017 1.01991 0.92091 1.22289 0.94364 0.99382 0.90076 1.19521 0.97055 0.93919 0.93622 1.22633 1.00116 0.95400 1.00765 1.22990 0.95514 1.00860 0.86959 1.67639 1.12150 1.10679 1.31053 1.23241 0.93783 0.89890 0.99349 1.22657 1.00325 1.02536 0.91608 0.92585 0.93278 0.92893 0.89512 0.86587 0.84514 0.83087 0.81980 0.81300 0.84489 0.84284 0.84443 0.80752 0.79334 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.75 13.96 21.45 0.30 -53.45 16 2 C 0.02 1.27 5.47 84.66 0.46 1.73 16 3 Si 0.93 37.62 27.47 68.60 1.88 39.51 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 7 C -0.52 -26.20 9.79 25.60 0.25 -25.95 16 8 H 0.03 1.56 8.06 -2.91 -0.02 1.54 16 9 C 0.21 8.53 3.99 85.63 0.34 8.87 16 10 N -0.58 -23.34 2.44 -835.30 -2.04 -25.38 16 11 C 0.17 6.04 5.76 85.63 0.49 6.53 16 12 C 0.10 3.84 6.36 42.55 0.27 4.11 16 13 C -0.14 -5.15 9.57 22.36 0.21 -4.94 16 14 C -0.09 -2.83 10.18 22.47 0.23 -2.60 16 15 C -0.17 -5.07 10.11 22.36 0.23 -4.84 16 16 C 0.07 2.38 11.18 84.67 0.95 3.33 16 17 N -0.50 -20.07 10.27 -183.88 -1.89 -21.96 16 18 C 0.54 22.50 7.61 86.44 0.66 23.16 16 19 O -0.57 -26.00 15.81 -4.22 -0.07 -26.06 16 20 C -0.18 -6.69 8.63 23.64 0.20 -6.48 16 21 C -0.04 -1.30 9.50 23.86 0.23 -1.08 16 22 C -0.03 -0.92 5.90 -19.94 -0.12 -1.04 16 23 C -0.17 -4.75 9.49 22.67 0.22 -4.53 16 24 C 0.09 2.37 11.17 84.63 0.95 3.31 16 25 N -0.51 -13.03 10.34 -196.14 -2.03 -15.05 16 26 C 0.09 1.98 11.17 84.63 0.95 2.93 16 27 C -0.15 -3.35 9.90 22.67 0.22 -3.12 16 28 H 0.27 14.30 8.31 -92.71 -0.77 13.52 16 29 H 0.05 1.89 5.15 -2.39 -0.01 1.88 16 30 H 0.05 1.95 7.32 -2.39 -0.02 1.93 16 31 H 0.09 3.17 7.42 -2.39 -0.02 3.15 16 32 H 0.12 3.38 7.79 -2.39 -0.02 3.36 16 33 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.17 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.14 5.00 4.32 -2.91 -0.01 4.99 16 38 H 0.14 4.27 7.52 -2.91 -0.02 4.24 16 39 H 0.14 3.92 6.30 -2.91 -0.02 3.90 16 40 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -71.54 365.42 3.89 -67.65 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.99 Total: 35.36 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.74 Total: -0.61 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.65 Total: -115.84 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.06 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.88 Total: 39.51 kcal Total: -71.54 3.89 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.763 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds