Wall clock time and date at job start Tue Mar 31 2020 13:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31334 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00165 * 3 2 1 5 5 H 1.48497 * 109.46910 * 29.99929 * 3 2 1 6 6 H 1.48497 * 109.47213 * 150.00556 * 3 2 1 7 7 C 1.39107 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99985 * 191.53134 * 7 2 1 9 9 N 1.36734 * 120.00372 * 11.52465 * 7 2 1 10 10 C 1.34774 * 120.00130 * 196.39020 * 9 7 2 11 11 O 1.21770 * 120.00383 * 4.49112 * 10 9 7 12 12 C 1.46118 * 119.99577 * 184.49789 * 10 9 7 13 13 C 1.35111 * 119.99629 * 174.40911 * 12 10 9 14 14 C 1.46972 * 119.99748 * 179.97438 * 13 12 10 15 15 C 1.39996 * 120.10850 * 359.72024 * 14 13 12 16 16 C 1.37658 * 119.89076 * 180.29971 * 15 14 13 17 17 C 1.39086 * 120.10831 * 359.97438 * 16 15 14 18 18 N 1.39894 * 119.89452 * 180.02562 * 17 16 15 19 19 C 1.37150 * 126.47923 * 359.69204 * 18 17 16 20 20 C 1.34637 * 106.83162 * 179.84068 * 19 18 17 21 21 N 1.34148 * 108.21037 * 0.42357 * 20 19 18 22 22 C 1.30498 * 109.36135 * 359.73056 * 21 20 19 23 23 C 1.39091 * 120.21737 * 359.97438 * 17 16 15 24 24 C 1.37650 * 120.11010 * 0.03013 * 23 17 16 25 25 C 1.46506 * 119.99525 * 16.38821 * 9 7 2 26 26 C 1.52998 * 117.49836 * 128.73805 * 25 9 7 27 27 C 1.52992 * 117.49957 * 60.11615 * 25 9 7 28 28 H 0.96995 * 119.99458 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00122 * 354.39860 * 12 10 9 30 30 H 1.08000 * 120.00267 * 359.97438 * 13 12 10 31 31 H 1.08000 * 120.05775 * 0.25228 * 15 14 13 32 32 H 1.07995 * 119.94721 * 179.97438 * 16 15 14 33 33 H 1.08004 * 126.58114 * 359.97438 * 19 18 17 34 34 H 1.08002 * 125.89046 * 180.15292 * 20 19 18 35 35 H 1.07996 * 125.71883 * 180.02562 * 22 21 20 36 36 H 1.08005 * 119.94263 * 179.97438 * 23 17 16 37 37 H 1.07997 * 120.05826 * 179.97438 * 24 23 17 38 38 H 1.08994 * 115.54648 * 274.44472 * 25 9 7 39 39 H 1.08997 * 117.49638 * 0.02562 * 26 25 9 40 40 H 1.09000 * 117.49738 * 145.01413 * 26 25 9 41 41 H 1.09004 * 117.50066 * 214.97785 * 27 25 9 42 42 H 1.09006 * 117.50167 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0464 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4401 0.6999 7 6 2.0088 -1.2047 -0.0005 8 1 3.0726 -1.2143 0.1864 9 7 1.3459 -2.3769 -0.2376 10 6 1.9221 -3.5531 0.0798 11 8 2.9969 -3.5699 0.6520 12 6 1.2572 -4.8083 -0.2628 13 6 1.8842 -5.9856 -0.0474 14 6 1.2152 -7.2482 -0.3915 15 6 -0.0740 -7.2339 -0.9370 16 6 -0.6988 -8.4193 -1.2519 17 6 -0.0512 -9.6300 -1.0294 18 7 -0.6902 -10.8320 -1.3515 19 6 -1.9468 -10.9705 -1.8834 20 6 -2.1616 -12.2907 -2.0374 21 7 -1.0739 -12.9457 -1.6046 22 6 -0.1856 -12.0837 -1.1913 23 6 1.2301 -9.6494 -0.4886 24 6 1.8632 -8.4693 -0.1703 25 6 0.0091 -2.3540 -0.8367 26 6 -0.2318 -3.2402 -2.0605 27 6 -0.1331 -1.7221 -2.2228 28 1 -0.4849 0.8400 0.0004 29 1 0.2645 -4.7950 -0.6880 30 1 2.8770 -5.9989 0.3775 31 1 -0.5778 -6.2944 -1.1099 32 1 -1.6935 -8.4094 -1.6724 33 1 -2.6316 -10.1734 -2.1329 34 1 -3.0571 -12.7441 -2.4362 35 1 0.7875 -12.3245 -0.7898 36 1 1.7287 -10.5920 -0.3173 37 1 2.8580 -8.4854 0.2499 38 1 -0.8171 -2.2252 -0.1377 39 1 0.6041 -3.8405 -2.4195 40 1 -1.2168 -3.6948 -2.1665 41 1 -1.0532 -1.1778 -2.4358 42 1 0.7678 -1.3229 -2.6888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491533564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:34 Heat of formation + Delta-G solvation = 120.557409 kcal Electronic energy + Delta-G solvation = -25506.217616 eV Core-core repulsion = 21840.526703 eV Total energy + Delta-G solvation = -3665.690912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51545 -39.46787 -38.84691 -36.21669 -34.96433 -33.37764 -32.29154 -31.48284 -31.25888 -29.76275 -28.56876 -25.67179 -24.16584 -23.38603 -22.37496 -21.59637 -21.32300 -20.81900 -20.30681 -18.85266 -18.21002 -17.17563 -16.46107 -15.69493 -15.52101 -15.40834 -15.26530 -14.88299 -14.51688 -14.24549 -13.98036 -13.89077 -13.82392 -13.39260 -13.32262 -13.15584 -12.87798 -12.50229 -11.95129 -11.74680 -11.31543 -11.27396 -11.12101 -10.94645 -10.84458 -10.53676 -10.44635 -10.34615 -10.00794 -9.57479 -9.49919 -9.30015 -9.00052 -8.87040 -8.49272 -7.97435 -7.79740 -6.49542 -3.94423 0.36804 1.13018 1.71963 2.45115 2.45691 2.87643 3.09472 3.15605 3.20639 3.67601 3.96620 4.30339 4.32762 4.39502 4.48323 4.54985 4.58761 4.66354 4.89817 4.94337 5.09395 5.10593 5.14120 5.38655 5.39060 5.56137 5.64225 5.66662 5.72085 5.78432 5.92273 6.06029 6.10929 6.16222 6.19958 6.26049 6.44379 6.57326 6.62036 6.79686 6.83441 6.90563 7.03277 7.10350 7.38129 7.73035 7.93384 8.33274 9.03530 9.24655 9.86538 10.51536 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.002361 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.632611 B =11856.365381 C =12622.954024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.035 3.965 3 Si 0.927 3.073 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.299 4.299 8 H 0.106 0.894 9 N -0.402 5.402 10 C 0.456 3.544 11 O -0.597 6.597 12 C -0.141 4.141 13 C -0.107 4.107 14 C -0.037 4.037 15 C -0.093 4.093 16 C -0.124 4.124 17 C 0.112 3.888 18 N -0.404 5.404 19 C -0.053 4.053 20 C -0.028 4.028 21 N -0.489 5.489 22 C 0.185 3.815 23 C -0.128 4.128 24 C -0.087 4.087 25 C 0.134 3.866 26 C -0.230 4.230 27 C -0.144 4.144 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.208 0.792 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 -14.934 -4.736 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.427 4.427 8 H 0.124 0.876 9 N -0.117 5.117 10 C 0.248 3.752 11 O -0.485 6.485 12 C -0.162 4.162 13 C -0.129 4.129 14 C -0.037 4.037 15 C -0.112 4.112 16 C -0.144 4.144 17 C 0.019 3.981 18 N -0.082 5.082 19 C -0.184 4.184 20 C -0.174 4.174 21 N -0.206 5.206 22 C -0.096 4.096 23 C -0.147 4.147 24 C -0.106 4.106 25 C 0.028 3.972 26 C -0.268 4.268 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.195 0.805 34 H 0.190 0.810 35 H 0.224 0.776 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.134 0.866 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.748 -15.494 -4.440 16.802 hybrid contribution -0.022 1.858 -0.131 1.862 sum -4.770 -13.636 -4.571 15.152 Atomic orbital electron populations 1.69885 1.06008 1.27844 1.45875 1.25356 0.95550 0.99852 0.96322 0.85888 0.79608 0.80574 0.78551 1.20183 1.20736 1.19188 1.19801 0.94272 0.82438 1.46159 0.87638 1.43206 1.13584 1.05365 1.49533 1.17748 0.87815 0.83585 0.86050 1.90654 1.23683 1.86959 1.47203 1.23638 1.00381 0.93527 0.98651 1.22001 1.00274 0.89757 1.00839 1.19260 0.93663 0.93600 0.97207 1.21349 0.94395 0.97881 0.97552 1.20731 1.00485 0.90498 1.02642 1.17870 0.93605 0.84022 1.02596 1.43177 1.13438 1.06156 1.45416 1.22805 0.88200 1.00022 1.07347 1.22344 0.98822 0.90155 1.06065 1.70317 1.01877 1.32655 1.15790 1.25254 1.01199 0.78408 1.04719 1.20681 0.93040 0.99434 1.01583 1.21211 1.00086 0.90575 0.98724 1.21228 0.87187 1.00256 0.88497 1.23702 1.01891 0.95234 1.05932 1.22771 1.02241 0.92363 1.00828 0.91857 0.85484 0.85061 0.84392 0.85245 0.80547 0.80963 0.77588 0.85195 0.84504 0.86591 0.89277 0.89143 0.89446 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.99 10.08 55.50 0.56 -20.43 16 2 C 0.04 0.87 5.01 -17.44 -0.09 0.78 16 3 Si 0.93 19.66 29.57 -169.99 -5.03 14.64 16 4 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.30 -7.92 9.25 -15.04 -0.14 -8.06 16 8 H 0.11 2.96 7.34 -52.48 -0.39 2.58 16 9 N -0.40 -9.83 2.93 -109.40 -0.32 -10.15 16 10 C 0.46 10.90 7.46 -13.10 -0.10 10.81 16 11 O -0.60 -16.38 15.91 5.13 0.08 -16.30 16 12 C -0.14 -2.58 7.54 -37.53 -0.28 -2.86 16 13 C -0.11 -1.73 9.45 -37.16 -0.35 -2.08 16 14 C -0.04 -0.47 5.87 -105.04 -0.62 -1.09 16 15 C -0.09 -1.09 9.40 -39.13 -0.37 -1.45 16 16 C -0.12 -1.28 9.45 -39.48 -0.37 -1.66 16 17 C 0.11 1.18 6.64 -83.55 -0.55 0.62 16 18 N -0.40 -4.21 2.98 -62.03 -0.19 -4.40 16 19 C -0.05 -0.50 10.85 -16.45 -0.18 -0.68 16 20 C -0.03 -0.28 11.85 -17.81 -0.21 -0.49 16 21 N -0.49 -5.88 11.24 -14.46 -0.16 -6.04 16 22 C 0.19 1.91 11.91 -89.59 -1.07 0.84 16 23 C -0.13 -1.25 9.44 -39.48 -0.37 -1.62 16 24 C -0.09 -0.95 9.79 -39.14 -0.38 -1.33 16 25 C 0.13 2.78 3.61 -67.93 -0.25 2.53 16 26 C -0.23 -3.77 7.79 -26.74 -0.21 -3.97 16 27 C -0.14 -2.74 8.88 -26.74 -0.24 -2.98 16 28 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 29 H 0.13 2.01 3.25 -52.49 -0.17 1.84 16 30 H 0.13 2.24 7.53 -52.49 -0.40 1.85 16 31 H 0.14 1.50 6.16 -52.49 -0.32 1.18 16 32 H 0.13 1.07 6.79 -52.49 -0.36 0.71 16 33 H 0.18 1.18 7.13 -52.48 -0.37 0.81 16 34 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.21 1.42 7.05 -52.49 -0.37 1.05 16 36 H 0.13 0.92 6.74 -52.48 -0.35 0.57 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 2.53 7.68 -51.93 -0.40 2.13 16 39 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -31.27 353.79 -10.24 -41.51 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.74 Total: 8.54 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -5.77 Total: -12.70 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.11 Total: -41.01 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.08 Total: -16.30 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.27 -10.24 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491533564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.069 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds