Wall clock time and date at job start Tue Mar 31 2020 13:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31334 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48504 * 109.46970 * 270.00165 * 3 2 1 5 5 H 1.48497 * 109.46910 * 29.99929 * 3 2 1 6 6 H 1.48497 * 109.47213 * 150.00556 * 3 2 1 7 7 C 1.39107 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99985 * 191.53134 * 7 2 1 9 9 N 1.36734 * 120.00372 * 11.52465 * 7 2 1 10 10 C 1.34774 * 120.00130 * 196.39020 * 9 7 2 11 11 O 1.21770 * 120.00383 * 4.49112 * 10 9 7 12 12 C 1.46118 * 119.99577 * 184.49789 * 10 9 7 13 13 C 1.35111 * 119.99629 * 174.40911 * 12 10 9 14 14 C 1.46972 * 119.99748 * 179.97438 * 13 12 10 15 15 C 1.39996 * 120.10850 * 359.72024 * 14 13 12 16 16 C 1.37658 * 119.89076 * 180.29971 * 15 14 13 17 17 C 1.39086 * 120.10831 * 359.97438 * 16 15 14 18 18 N 1.39894 * 119.89452 * 180.02562 * 17 16 15 19 19 C 1.37150 * 126.47923 * 359.69204 * 18 17 16 20 20 C 1.34637 * 106.83162 * 179.84068 * 19 18 17 21 21 N 1.34148 * 108.21037 * 0.42357 * 20 19 18 22 22 C 1.30498 * 109.36135 * 359.73056 * 21 20 19 23 23 C 1.39091 * 120.21737 * 359.97438 * 17 16 15 24 24 C 1.37650 * 120.11010 * 0.03013 * 23 17 16 25 25 C 1.46506 * 119.99525 * 16.38821 * 9 7 2 26 26 C 1.52998 * 117.49836 * 128.73805 * 25 9 7 27 27 C 1.52992 * 117.49957 * 60.11615 * 25 9 7 28 28 H 0.96995 * 119.99458 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00122 * 354.39860 * 12 10 9 30 30 H 1.08000 * 120.00267 * 359.97438 * 13 12 10 31 31 H 1.08000 * 120.05775 * 0.25228 * 15 14 13 32 32 H 1.07995 * 119.94721 * 179.97438 * 16 15 14 33 33 H 1.08004 * 126.58114 * 359.97438 * 19 18 17 34 34 H 1.08002 * 125.89046 * 180.15292 * 20 19 18 35 35 H 1.07996 * 125.71883 * 180.02562 * 22 21 20 36 36 H 1.08005 * 119.94263 * 179.97438 * 23 17 16 37 37 H 1.07997 * 120.05826 * 179.97438 * 24 23 17 38 38 H 1.08994 * 115.54648 * 274.44472 * 25 9 7 39 39 H 1.08997 * 117.49638 * 0.02562 * 26 25 9 40 40 H 1.09000 * 117.49738 * 145.01413 * 26 25 9 41 41 H 1.09004 * 117.50066 * 214.97785 * 27 25 9 42 42 H 1.09006 * 117.50167 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4949 2.0464 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4401 0.6999 7 6 2.0088 -1.2047 -0.0005 8 1 3.0726 -1.2143 0.1864 9 7 1.3459 -2.3769 -0.2376 10 6 1.9221 -3.5531 0.0798 11 8 2.9969 -3.5699 0.6520 12 6 1.2572 -4.8083 -0.2628 13 6 1.8842 -5.9856 -0.0474 14 6 1.2152 -7.2482 -0.3915 15 6 -0.0740 -7.2339 -0.9370 16 6 -0.6988 -8.4193 -1.2519 17 6 -0.0512 -9.6300 -1.0294 18 7 -0.6902 -10.8320 -1.3515 19 6 -1.9468 -10.9705 -1.8834 20 6 -2.1616 -12.2907 -2.0374 21 7 -1.0739 -12.9457 -1.6046 22 6 -0.1856 -12.0837 -1.1913 23 6 1.2301 -9.6494 -0.4886 24 6 1.8632 -8.4693 -0.1703 25 6 0.0091 -2.3540 -0.8367 26 6 -0.2318 -3.2402 -2.0605 27 6 -0.1331 -1.7221 -2.2228 28 1 -0.4849 0.8400 0.0004 29 1 0.2645 -4.7950 -0.6880 30 1 2.8770 -5.9989 0.3775 31 1 -0.5778 -6.2944 -1.1099 32 1 -1.6935 -8.4094 -1.6724 33 1 -2.6316 -10.1734 -2.1329 34 1 -3.0571 -12.7441 -2.4362 35 1 0.7875 -12.3245 -0.7898 36 1 1.7287 -10.5920 -0.3173 37 1 2.8580 -8.4854 0.2499 38 1 -0.8171 -2.2252 -0.1377 39 1 0.6041 -3.8405 -2.4195 40 1 -1.2168 -3.6948 -2.1665 41 1 -1.0532 -1.1778 -2.4358 42 1 0.7678 -1.3229 -2.6888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491533564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:34 Heat of formation + Delta-G solvation = 105.283467 kcal Electronic energy + Delta-G solvation = -25506.879943 eV Core-core repulsion = 21840.526703 eV Total energy + Delta-G solvation = -3666.353240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.26379 -40.81539 -40.08150 -37.91245 -36.01252 -35.02297 -33.46156 -33.07708 -32.31521 -30.54178 -29.62380 -27.32103 -25.34418 -24.24911 -23.64230 -23.15339 -22.46090 -21.63447 -21.43767 -19.70411 -19.59039 -18.92827 -17.95081 -17.02934 -16.50936 -16.46474 -16.43550 -16.05468 -15.81462 -15.68777 -15.11484 -14.97852 -14.77066 -14.63596 -14.41541 -14.13031 -14.04027 -13.97442 -13.33586 -13.09248 -12.93881 -12.66291 -12.47702 -12.25408 -12.15053 -12.04413 -11.94863 -11.68114 -11.12271 -11.07403 -10.72632 -10.60444 -10.33289 -10.09979 -9.79965 -9.61988 -8.86829 -8.33166 -5.91290 -0.60845 0.32576 0.67895 1.35833 1.39580 1.50044 1.51217 1.69828 2.12348 2.23899 2.46358 2.86300 2.94834 3.10533 3.22853 3.58052 3.68865 3.73205 3.78663 3.96935 4.05375 4.21479 4.24885 4.26599 4.35508 4.44376 4.50804 4.61907 4.65425 4.70600 4.80809 4.91252 4.96116 5.12272 5.14163 5.19530 5.38878 5.40322 5.43484 5.45729 5.56517 5.65909 5.70118 5.78402 6.05520 6.27616 6.50075 6.99448 7.15467 7.44859 8.04128 8.65238 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.002361 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.632611 B =11856.365381 C =12622.954024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.010 3.990 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.345 4.345 8 H 0.070 0.930 9 N -0.418 5.418 10 C 0.447 3.553 11 O -0.650 6.650 12 C -0.175 4.175 13 C -0.063 4.063 14 C -0.070 4.070 15 C -0.086 4.086 16 C -0.127 4.127 17 C 0.121 3.879 18 N -0.412 5.412 19 C -0.054 4.054 20 C -0.044 4.044 21 N -0.523 5.523 22 C 0.180 3.820 23 C -0.129 4.129 24 C -0.078 4.078 25 C 0.106 3.894 26 C -0.183 4.183 27 C -0.149 4.149 28 H 0.275 0.725 29 H 0.155 0.845 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.204 0.796 34 H 0.191 0.809 35 H 0.234 0.766 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -17.288 -6.009 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.205 1.205 7 C -0.473 4.473 8 H 0.088 0.912 9 N -0.132 5.132 10 C 0.241 3.759 11 O -0.541 6.541 12 C -0.195 4.195 13 C -0.084 4.084 14 C -0.071 4.071 15 C -0.104 4.104 16 C -0.147 4.147 17 C 0.028 3.972 18 N -0.090 5.090 19 C -0.184 4.184 20 C -0.189 4.189 21 N -0.241 5.241 22 C -0.101 4.101 23 C -0.148 4.148 24 C -0.097 4.097 25 C 0.002 3.998 26 C -0.221 4.221 27 C -0.187 4.187 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.133 0.867 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.221 0.779 34 H 0.208 0.792 35 H 0.250 0.750 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.725 -17.872 -5.740 19.940 hybrid contribution 0.562 2.179 0.274 2.267 sum -6.163 -15.694 -5.466 17.724 Atomic orbital electron populations 1.69957 1.06362 1.28534 1.45551 1.25928 0.96431 1.01692 0.95422 0.85094 0.78036 0.77433 0.78797 1.19188 1.19470 1.20483 1.19591 0.93361 0.84525 1.49823 0.91174 1.43320 1.14819 1.04832 1.50260 1.18713 0.87250 0.85325 0.84648 1.90589 1.26074 1.88107 1.49370 1.23308 1.01852 0.91243 1.03127 1.22164 0.99057 0.90856 0.96353 1.19135 0.94921 0.92557 1.00458 1.21467 0.93650 0.98888 0.96442 1.20962 1.01529 0.89775 1.02416 1.18112 0.93728 0.84261 1.01106 1.43300 1.13866 1.06068 1.45779 1.23300 0.88149 1.00597 1.06379 1.22786 0.99188 0.90738 1.06225 1.70314 1.02986 1.33834 1.16918 1.25855 1.01947 0.78195 1.04058 1.20967 0.92897 1.00162 1.00815 1.21414 1.00587 0.90195 0.97504 1.21180 0.85068 1.04438 0.89143 1.23758 1.04078 0.93513 1.00717 1.22711 1.01691 0.94837 0.99446 0.91454 0.82820 0.86659 0.83578 0.82789 0.77879 0.79189 0.74973 0.82358 0.83135 0.88033 0.89151 0.84703 0.88239 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.30 10.08 21.69 0.22 -43.08 16 2 C 0.01 0.52 5.01 84.98 0.43 0.94 16 3 Si 0.98 41.64 29.57 68.60 2.03 43.67 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.35 -19.52 9.25 84.14 0.78 -18.74 16 8 H 0.07 4.32 7.34 -2.91 -0.02 4.30 16 9 N -0.42 -21.49 2.93 -618.23 -1.81 -23.30 16 10 C 0.45 22.50 7.46 86.29 0.64 23.14 16 11 O -0.65 -38.11 15.91 -4.57 -0.07 -38.19 16 12 C -0.18 -6.43 7.54 23.60 0.18 -6.25 16 13 C -0.06 -2.01 9.45 23.84 0.23 -1.78 16 14 C -0.07 -1.65 5.87 -20.14 -0.12 -1.77 16 15 C -0.09 -1.71 9.40 22.56 0.21 -1.49 16 16 C -0.13 -2.09 9.45 22.34 0.21 -1.88 16 17 C 0.12 2.05 6.64 38.26 0.25 2.31 16 18 N -0.41 -7.02 2.98 -350.15 -1.04 -8.07 16 19 C -0.05 -0.84 10.85 83.04 0.90 0.06 16 20 C -0.04 -0.79 11.85 83.51 0.99 0.20 16 21 N -0.52 -11.31 11.24 -199.67 -2.25 -13.56 16 22 C 0.18 3.13 11.91 179.99 2.14 5.27 16 23 C -0.13 -2.00 9.44 22.34 0.21 -1.79 16 24 C -0.08 -1.47 9.79 22.56 0.22 -1.25 16 25 C 0.11 4.47 3.61 44.99 0.16 4.64 16 26 C -0.18 -5.64 7.79 30.59 0.24 -5.40 16 27 C -0.15 -5.63 8.88 30.59 0.27 -5.36 16 28 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 29 H 0.15 4.64 3.25 -2.91 -0.01 4.63 16 30 H 0.12 4.02 7.53 -2.91 -0.02 3.99 16 31 H 0.15 2.62 6.16 -2.91 -0.02 2.61 16 32 H 0.15 1.75 6.79 -2.91 -0.02 1.73 16 33 H 0.20 1.80 7.13 -2.91 -0.02 1.78 16 34 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.23 2.34 7.05 -2.91 -0.02 2.32 16 36 H 0.16 1.52 6.74 -2.91 -0.02 1.50 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.10 4.51 7.68 -2.39 -0.02 4.49 16 39 H 0.09 2.82 7.04 -2.39 -0.02 2.80 16 40 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16 42 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -73.66 353.79 6.08 -67.58 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 1.06 Total: 24.08 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 7.95 Total: -9.13 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -4.88 Total: -88.01 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.07 Total: -38.19 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -73.66 6.08 -67.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491533564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.861 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds