Wall clock time and date at job start Tue Mar 31 2020 13:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86800 * 119.99553 * 2 1 4 4 H 1.48505 * 109.47047 * 239.99966 * 3 2 1 5 5 H 1.48494 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47110 * 120.00404 * 3 2 1 7 7 C 1.39111 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99857 * 190.50733 * 7 2 1 9 9 N 1.36731 * 119.99858 * 10.51472 * 7 2 1 10 10 C 1.34772 * 119.99946 * 196.95053 * 9 7 2 11 11 O 1.21782 * 119.99884 * 354.87447 * 10 9 7 12 12 C 1.41839 * 120.00113 * 174.59846 * 10 9 7 13 13 C 1.35133 * 120.00040 * 174.48775 * 12 10 9 14 14 C 1.46913 * 120.00000 * 180.02562 * 13 12 10 15 15 C 1.39922 * 120.21836 * 6.63064 * 14 13 12 16 16 C 1.37778 * 119.88682 * 179.97438 * 15 14 13 17 17 C 1.38564 * 120.33705 * 359.96707 * 16 15 14 18 18 C 1.38149 * 120.44695 * 0.03386 * 17 16 15 19 19 C 1.38665 * 120.09894 * 359.73467 * 18 17 16 20 20 N 1.39725 * 120.16645 * 180.28252 * 19 18 17 21 21 C 1.35848 * 126.10564 * 312.29172 * 20 19 18 22 22 C 1.35291 * 107.61849 * 180.02562 * 21 20 19 23 23 C 1.39952 * 107.96856 * 0.02562 * 22 21 20 24 24 N 1.30845 * 108.36543 * 359.71264 * 23 22 21 25 25 C 1.46507 * 119.99841 * 16.94024 * 9 7 2 26 26 C 1.53004 * 117.49280 * 130.18657 * 25 9 7 27 27 C 1.52996 * 117.49425 * 61.56659 * 25 9 7 28 28 H 0.97002 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99655 * 354.49942 * 12 10 9 30 30 H 1.07996 * 119.99790 * 0.02562 * 13 12 10 31 31 H 1.08004 * 120.05553 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.82651 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.77636 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.94537 * 179.97438 * 18 17 16 35 35 H 1.08001 * 126.18572 * 359.97438 * 21 20 19 36 36 H 1.07996 * 126.01934 * 180.02562 * 22 21 20 37 37 H 1.07999 * 125.81765 * 180.02562 * 23 22 21 38 38 H 1.08993 * 115.55225 * 275.89054 * 25 9 7 39 39 H 1.08996 * 117.49677 * 0.02562 * 26 25 9 40 40 H 1.08996 * 117.49812 * 145.02400 * 26 25 9 41 41 H 1.08999 * 117.49945 * 214.97105 * 27 25 9 42 42 H 1.09003 * 117.50306 * 359.97269 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7464 0.0006 6 1 3.1011 1.6965 1.2125 7 6 2.0090 -1.2047 -0.0005 8 1 3.0753 -1.2125 0.1700 9 7 1.3426 -2.3788 -0.2172 10 6 1.9192 -3.5516 0.1123 11 8 3.0682 -3.5732 0.5154 12 6 1.1859 -4.7600 -0.0050 13 6 1.7962 -5.9450 0.2178 14 6 1.0368 -7.1967 0.0958 15 6 -0.2774 -7.1792 -0.3840 16 6 -0.9831 -8.3572 -0.4961 17 6 -0.3978 -9.5606 -0.1367 18 6 0.8989 -9.5939 0.3387 19 6 1.6276 -8.4199 0.4545 20 7 2.9412 -8.4527 0.9295 21 6 3.3763 -9.1108 2.0354 22 6 4.7065 -8.8906 2.1461 23 6 5.0993 -8.0744 1.0793 24 7 4.0455 -7.8166 0.3477 25 6 0.0017 -2.3619 -0.8071 26 6 -0.2587 -3.2894 -1.9959 27 6 -0.1435 -1.7794 -2.2144 28 1 -0.4851 0.8400 0.0004 29 1 0.1399 -4.7331 -0.2725 30 1 2.8421 -5.9718 0.4855 31 1 -0.7379 -6.2438 -0.6660 32 1 -1.9973 -8.3426 -0.8670 33 1 -0.9594 -10.4786 -0.2278 34 1 1.3470 -10.5364 0.6169 35 1 2.7697 -9.7020 2.7055 36 1 5.3518 -9.2767 2.9213 37 1 6.1022 -7.7219 0.8891 38 1 -0.8177 -2.1979 -0.1075 39 1 0.5675 -3.9123 -2.3386 40 1 -1.2496 -3.7357 -2.0784 41 1 -1.0588 -1.2325 -2.4407 42 1 0.7585 -1.4083 -2.7011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492027763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:24 Heat of formation + Delta-G solvation = 144.567906 kcal Electronic energy + Delta-G solvation = -26421.111258 eV Core-core repulsion = 22756.461519 eV Total energy + Delta-G solvation = -3664.649739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35582 -39.28068 -38.75945 -36.14954 -33.87802 -33.45875 -32.95187 -31.17173 -30.13814 -29.73028 -28.73878 -25.64453 -23.81715 -23.40268 -21.97215 -21.49534 -20.96118 -20.73132 -20.19330 -18.10460 -17.99431 -17.04963 -16.52007 -15.75299 -15.45465 -15.16070 -14.93437 -14.42373 -14.26627 -14.07817 -13.86030 -13.55913 -13.48043 -13.16331 -12.86953 -12.80015 -12.65985 -12.40291 -11.91293 -11.44143 -11.24425 -11.15082 -10.91655 -10.79872 -10.59747 -10.47977 -10.41568 -10.02872 -9.90722 -9.80762 -9.43065 -9.06359 -8.92381 -8.48702 -8.37199 -7.86930 -7.74477 -6.40480 -3.84367 0.64798 1.04978 2.04049 2.38711 2.51720 2.88796 3.18386 3.20017 3.24567 3.70646 4.05582 4.45572 4.59970 4.66786 4.69892 4.76670 4.85102 4.92920 4.96941 5.16204 5.25496 5.29766 5.44136 5.62459 5.65893 5.70876 5.76388 5.88548 5.93972 5.97029 6.08469 6.15820 6.19108 6.22687 6.35198 6.44671 6.61071 6.68766 6.73050 6.89217 6.97417 7.10656 7.21765 7.27234 7.46588 7.73703 8.04820 8.44731 9.14015 9.35180 9.98466 10.60532 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003613 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.792832 B = 7748.886962 C = 9249.251549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.035 3.965 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.297 4.297 8 H 0.105 0.895 9 N -0.405 5.405 10 C 0.461 3.539 11 O -0.596 6.596 12 C -0.144 4.144 13 C -0.097 4.097 14 C -0.024 4.024 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.145 3.855 20 N -0.326 5.326 21 C 0.053 3.947 22 C -0.265 4.265 23 C 0.047 3.953 24 N -0.271 5.271 25 C 0.135 3.865 26 C -0.227 4.227 27 C -0.146 4.146 28 H 0.270 0.730 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.186 0.814 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 -17.196 0.060 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.425 4.425 8 H 0.123 0.877 9 N -0.121 5.121 10 C 0.254 3.746 11 O -0.484 6.484 12 C -0.165 4.165 13 C -0.119 4.119 14 C -0.026 4.026 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.134 4.134 18 C -0.139 4.139 19 C 0.053 3.947 20 N -0.103 5.103 21 C -0.090 4.090 22 C -0.294 4.294 23 C -0.140 4.140 24 N -0.090 5.090 25 C 0.029 3.971 26 C -0.265 4.265 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.191 0.809 36 H 0.168 0.832 37 H 0.203 0.797 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.499 -16.353 -0.802 16.742 hybrid contribution 0.514 0.537 0.698 1.020 sum -2.985 -15.816 -0.104 16.096 Atomic orbital electron populations 1.69874 1.05979 1.27784 1.46328 1.25332 0.95525 0.99732 0.96460 0.85964 0.79037 0.80307 0.79305 1.19789 1.20794 1.19665 1.19755 0.94191 0.82561 1.46021 0.87719 1.43240 1.13309 1.05557 1.49996 1.16681 0.88116 0.83937 0.85833 1.90665 1.18167 1.86876 1.52715 1.22503 1.00421 0.93706 0.99905 1.22240 1.00479 0.89470 0.99724 1.19099 0.93522 0.92152 0.97860 1.21441 0.92882 0.99160 0.98726 1.21157 1.00143 0.92210 0.99527 1.20982 0.94294 0.98368 0.99770 1.20905 0.95401 0.96041 1.01581 1.17467 0.81080 0.93692 1.02436 1.45787 1.05497 1.39002 1.19991 1.22748 0.96054 0.98961 0.91210 1.21529 0.94718 1.09012 1.04134 1.24072 0.98515 0.97530 0.93900 1.77654 0.92393 1.17517 1.21412 1.21191 0.87186 0.99838 0.88845 1.23644 1.01825 0.94654 1.06356 1.22766 1.02155 0.92878 1.00625 0.91919 0.86123 0.84068 0.84502 0.85324 0.85318 0.85498 0.80928 0.83200 0.79677 0.86570 0.89449 0.89188 0.89469 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.85 10.09 55.50 0.56 -21.29 16 2 C 0.03 0.90 5.06 -17.44 -0.09 0.81 16 3 Si 0.93 20.47 29.57 -169.99 -5.03 15.44 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.29 9.30 -15.04 -0.14 -8.43 16 8 H 0.11 3.09 7.28 -52.49 -0.38 2.71 16 9 N -0.41 -10.54 2.93 -110.88 -0.32 -10.87 16 10 C 0.46 12.02 7.24 -14.89 -0.11 11.91 16 11 O -0.60 -17.72 15.76 5.12 0.08 -17.64 16 12 C -0.14 -3.05 7.38 -39.31 -0.29 -3.34 16 13 C -0.10 -1.96 8.91 -37.18 -0.33 -2.29 16 14 C -0.02 -0.40 5.88 -104.91 -0.62 -1.01 16 15 C -0.10 -1.38 9.40 -39.12 -0.37 -1.75 16 16 C -0.11 -1.17 10.02 -39.63 -0.40 -1.57 16 17 C -0.12 -1.12 10.03 -39.49 -0.40 -1.51 16 18 C -0.12 -1.34 9.63 -39.46 -0.38 -1.72 16 19 C 0.14 2.14 6.27 -83.25 -0.52 1.62 16 20 N -0.33 -5.03 3.35 -10.31 -0.03 -5.06 16 21 C 0.05 0.65 11.16 -16.82 -0.19 0.46 16 22 C -0.27 -3.16 10.80 -39.99 -0.43 -3.59 16 23 C 0.05 0.67 12.02 -17.33 -0.21 0.46 16 24 N -0.27 -4.73 10.32 30.64 0.32 -4.41 16 25 C 0.13 2.99 3.37 -67.93 -0.23 2.76 16 26 C -0.23 -4.08 8.07 -26.73 -0.22 -4.29 16 27 C -0.15 -2.97 9.06 -26.73 -0.24 -3.21 16 28 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.12 2.21 3.84 -52.49 -0.20 2.00 16 30 H 0.14 3.24 5.41 -52.49 -0.28 2.95 16 31 H 0.14 1.72 6.23 -52.48 -0.33 1.39 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.14 8.03 -52.49 -0.42 0.72 16 35 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.19 2.06 8.06 -52.49 -0.42 1.63 16 38 H 0.12 2.66 7.60 -51.93 -0.39 2.27 16 39 H 0.09 1.64 7.37 -51.93 -0.38 1.25 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -33.31 355.69 -9.13 -42.44 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.91 Total: 10.72 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -5.15 Total: -14.69 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.52 Total: -41.63 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.08 Total: -17.64 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.31 -9.13 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492027763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.010 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds