Wall clock time and date at job start Tue Mar 31 2020 13:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86800 * 119.99553 * 2 1 4 4 H 1.48505 * 109.47047 * 239.99966 * 3 2 1 5 5 H 1.48494 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47110 * 120.00404 * 3 2 1 7 7 C 1.39111 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99857 * 190.50733 * 7 2 1 9 9 N 1.36731 * 119.99858 * 10.51472 * 7 2 1 10 10 C 1.34772 * 119.99946 * 196.95053 * 9 7 2 11 11 O 1.21782 * 119.99884 * 354.87447 * 10 9 7 12 12 C 1.41839 * 120.00113 * 174.59846 * 10 9 7 13 13 C 1.35133 * 120.00040 * 174.48775 * 12 10 9 14 14 C 1.46913 * 120.00000 * 180.02562 * 13 12 10 15 15 C 1.39922 * 120.21836 * 6.63064 * 14 13 12 16 16 C 1.37778 * 119.88682 * 179.97438 * 15 14 13 17 17 C 1.38564 * 120.33705 * 359.96707 * 16 15 14 18 18 C 1.38149 * 120.44695 * 0.03386 * 17 16 15 19 19 C 1.38665 * 120.09894 * 359.73467 * 18 17 16 20 20 N 1.39725 * 120.16645 * 180.28252 * 19 18 17 21 21 C 1.35848 * 126.10564 * 312.29172 * 20 19 18 22 22 C 1.35291 * 107.61849 * 180.02562 * 21 20 19 23 23 C 1.39952 * 107.96856 * 0.02562 * 22 21 20 24 24 N 1.30845 * 108.36543 * 359.71264 * 23 22 21 25 25 C 1.46507 * 119.99841 * 16.94024 * 9 7 2 26 26 C 1.53004 * 117.49280 * 130.18657 * 25 9 7 27 27 C 1.52996 * 117.49425 * 61.56659 * 25 9 7 28 28 H 0.97002 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99655 * 354.49942 * 12 10 9 30 30 H 1.07996 * 119.99790 * 0.02562 * 13 12 10 31 31 H 1.08004 * 120.05553 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.82651 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.77636 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.94537 * 179.97438 * 18 17 16 35 35 H 1.08001 * 126.18572 * 359.97438 * 21 20 19 36 36 H 1.07996 * 126.01934 * 180.02562 * 22 21 20 37 37 H 1.07999 * 125.81765 * 180.02562 * 23 22 21 38 38 H 1.08993 * 115.55225 * 275.89054 * 25 9 7 39 39 H 1.08996 * 117.49677 * 0.02562 * 26 25 9 40 40 H 1.08996 * 117.49812 * 145.02400 * 26 25 9 41 41 H 1.08999 * 117.49945 * 214.97105 * 27 25 9 42 42 H 1.09003 * 117.50306 * 359.97269 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7464 0.0006 6 1 3.1011 1.6965 1.2125 7 6 2.0090 -1.2047 -0.0005 8 1 3.0753 -1.2125 0.1700 9 7 1.3426 -2.3788 -0.2172 10 6 1.9192 -3.5516 0.1123 11 8 3.0682 -3.5732 0.5154 12 6 1.1859 -4.7600 -0.0050 13 6 1.7962 -5.9450 0.2178 14 6 1.0368 -7.1967 0.0958 15 6 -0.2774 -7.1792 -0.3840 16 6 -0.9831 -8.3572 -0.4961 17 6 -0.3978 -9.5606 -0.1367 18 6 0.8989 -9.5939 0.3387 19 6 1.6276 -8.4199 0.4545 20 7 2.9412 -8.4527 0.9295 21 6 3.3763 -9.1108 2.0354 22 6 4.7065 -8.8906 2.1461 23 6 5.0993 -8.0744 1.0793 24 7 4.0455 -7.8166 0.3477 25 6 0.0017 -2.3619 -0.8071 26 6 -0.2587 -3.2894 -1.9959 27 6 -0.1435 -1.7794 -2.2144 28 1 -0.4851 0.8400 0.0004 29 1 0.1399 -4.7331 -0.2725 30 1 2.8421 -5.9718 0.4855 31 1 -0.7379 -6.2438 -0.6660 32 1 -1.9973 -8.3426 -0.8670 33 1 -0.9594 -10.4786 -0.2278 34 1 1.3470 -10.5364 0.6169 35 1 2.7697 -9.7020 2.7055 36 1 5.3518 -9.2767 2.9213 37 1 6.1022 -7.7219 0.8891 38 1 -0.8177 -2.1979 -0.1075 39 1 0.5675 -3.9123 -2.3386 40 1 -1.2496 -3.7357 -2.0784 41 1 -1.0588 -1.2325 -2.4407 42 1 0.7585 -1.4083 -2.7011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492027763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:23 Heat of formation + Delta-G solvation = 125.388498 kcal Electronic energy + Delta-G solvation = -26421.942940 eV Core-core repulsion = 22756.461519 eV Total energy + Delta-G solvation = -3665.481421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.38803 -40.94625 -39.95344 -37.98967 -35.44256 -34.67342 -34.43569 -33.13634 -31.20287 -30.88666 -29.84201 -27.44713 -25.25552 -24.38023 -23.50563 -23.13539 -22.33356 -21.73354 -21.39414 -19.69814 -19.13596 -18.88300 -18.04617 -17.08379 -16.83620 -16.71455 -16.05128 -16.00623 -15.71622 -15.39892 -15.08765 -14.94632 -14.85607 -14.49529 -14.30800 -14.05033 -13.86070 -13.60198 -13.38296 -13.05130 -12.97929 -12.51499 -12.33209 -12.30080 -12.16065 -12.14054 -11.76670 -11.68420 -11.27687 -11.13301 -10.89103 -10.74301 -10.37812 -10.06379 -9.82129 -9.52672 -9.01953 -8.35652 -5.93376 -0.54430 0.11153 0.94270 1.10198 1.36832 1.41079 1.46642 1.54376 1.88131 2.22719 2.45803 2.79815 2.93297 3.09053 3.19487 3.64500 3.69068 3.89095 3.99276 4.08837 4.15697 4.20670 4.26535 4.34953 4.39211 4.43137 4.48915 4.65343 4.75508 4.77932 4.79304 4.98298 5.04956 5.06886 5.08705 5.26550 5.35124 5.37011 5.39675 5.46946 5.52195 5.61089 5.69904 5.83808 6.03192 6.29880 6.48873 6.68342 7.12686 7.40121 8.01167 8.62782 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003613 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.792832 B = 7748.886962 C = 9249.251549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.279 1.279 7 C -0.350 4.350 8 H 0.067 0.933 9 N -0.416 5.416 10 C 0.448 3.552 11 O -0.655 6.655 12 C -0.175 4.175 13 C -0.064 4.064 14 C -0.073 4.073 15 C -0.101 4.101 16 C -0.107 4.107 17 C -0.087 4.087 18 C -0.118 4.118 19 C 0.131 3.869 20 N -0.340 5.340 21 C 0.053 3.947 22 C -0.266 4.266 23 C 0.034 3.966 24 N -0.335 5.335 25 C 0.107 3.893 26 C -0.184 4.184 27 C -0.148 4.148 28 H 0.277 0.723 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.154 0.846 35 H 0.213 0.787 36 H 0.182 0.818 37 H 0.201 0.799 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 -20.458 -0.248 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.204 1.204 7 C -0.477 4.477 8 H 0.085 0.915 9 N -0.130 5.130 10 C 0.243 3.757 11 O -0.547 6.547 12 C -0.196 4.196 13 C -0.086 4.086 14 C -0.075 4.075 15 C -0.119 4.119 16 C -0.125 4.125 17 C -0.106 4.106 18 C -0.139 4.139 19 C 0.040 3.960 20 N -0.118 5.118 21 C -0.089 4.089 22 C -0.294 4.294 23 C -0.152 4.152 24 N -0.154 5.154 25 C 0.002 3.998 26 C -0.221 4.221 27 C -0.186 4.186 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.124 0.876 31 H 0.159 0.841 32 H 0.185 0.815 33 H 0.192 0.808 34 H 0.172 0.828 35 H 0.230 0.770 36 H 0.200 0.800 37 H 0.218 0.782 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.884 -19.625 -1.126 20.828 hybrid contribution 1.539 1.207 0.843 2.130 sum -5.344 -18.418 -0.283 19.179 Atomic orbital electron populations 1.69935 1.06328 1.28750 1.45178 1.25933 0.96480 1.01586 0.95173 0.85147 0.78205 0.77162 0.78724 1.19807 1.18475 1.20410 1.19572 0.93247 0.84659 1.50263 0.91481 1.43341 1.14583 1.04864 1.50243 1.17520 0.87786 0.85608 0.84759 1.90593 1.20805 1.87987 1.55294 1.22219 1.01410 0.91642 1.04305 1.22313 0.99175 0.91495 0.95655 1.19047 0.95147 0.90820 1.02448 1.21625 0.91613 1.00928 0.97784 1.21607 1.01486 0.91102 0.98263 1.21597 0.93319 0.99842 0.95796 1.21281 0.95929 0.95595 1.01051 1.17922 0.81121 0.94471 1.02504 1.45992 1.05438 1.39424 1.20932 1.23490 0.96658 0.98217 0.90509 1.21954 0.95266 1.08232 1.03996 1.24570 0.98746 0.97504 0.94416 1.77573 0.94009 1.19846 1.23969 1.21215 0.85042 1.03965 0.89545 1.23680 1.03830 0.93118 1.01484 1.22731 1.01796 0.95114 0.98911 0.91245 0.83122 0.87608 0.84087 0.81488 0.80814 0.82842 0.77010 0.80044 0.78198 0.87466 0.90296 0.84422 0.87648 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.56 10.09 21.69 0.22 -44.34 16 2 C 0.01 0.71 5.06 84.98 0.43 1.14 16 3 Si 0.98 43.32 29.57 68.60 2.03 45.35 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.35 -20.98 9.30 84.14 0.78 -20.20 16 8 H 0.07 4.39 7.28 -2.91 -0.02 4.37 16 9 N -0.42 -23.10 2.93 -622.88 -1.82 -24.93 16 10 C 0.45 25.32 7.24 85.13 0.62 25.94 16 11 O -0.65 -42.87 15.76 -4.61 -0.07 -42.94 16 12 C -0.18 -7.82 7.38 22.45 0.17 -7.65 16 13 C -0.06 -2.75 8.91 23.83 0.21 -2.53 16 14 C -0.07 -2.34 5.88 -20.05 -0.12 -2.46 16 15 C -0.10 -2.42 9.40 22.57 0.21 -2.21 16 16 C -0.11 -1.66 10.02 22.24 0.22 -1.43 16 17 C -0.09 -1.16 10.03 22.33 0.22 -0.94 16 18 C -0.12 -2.18 9.63 22.35 0.22 -1.96 16 19 C 0.13 3.71 6.27 38.53 0.24 3.95 16 20 N -0.34 -10.46 3.35 -186.54 -0.62 -11.09 16 21 C 0.05 1.22 11.16 83.39 0.93 2.15 16 22 C -0.27 -6.11 10.80 22.00 0.24 -5.87 16 23 C 0.03 1.00 12.02 85.26 1.02 2.03 16 24 N -0.33 -12.30 10.32 -56.97 -0.59 -12.88 16 25 C 0.11 4.84 3.37 44.99 0.15 4.99 16 26 C -0.18 -6.39 8.07 30.60 0.25 -6.14 16 27 C -0.15 -6.00 9.06 30.59 0.28 -5.72 16 28 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.15 5.56 3.84 -2.91 -0.01 5.55 16 30 H 0.11 5.30 5.41 -2.91 -0.02 5.28 16 31 H 0.14 3.16 6.23 -2.91 -0.02 3.14 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.15 1.99 8.03 -2.91 -0.02 1.96 16 35 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.20 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.11 5.00 7.60 -2.39 -0.02 4.98 16 39 H 0.08 2.93 7.37 -2.39 -0.02 2.92 16 40 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 42 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -83.51 355.69 6.26 -77.25 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 1.05 Total: 30.51 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 6.07 Total: -16.92 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -2.82 Total: -93.24 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.07 Total: -42.94 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -83.51 6.26 -77.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492027763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.634 kcal (2) G-P(sol) polarization free energy of solvation -83.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds