Wall clock time and date at job start Tue Mar 31 2020 13:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31338 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48500 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47262 * 299.99822 * 3 2 1 6 6 H 1.48496 * 109.47260 * 59.99808 * 3 2 1 7 7 C 1.39101 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00211 * 192.13550 * 7 2 1 9 9 N 1.36737 * 120.00076 * 12.13985 * 7 2 1 10 10 C 1.34777 * 119.99863 * 197.14006 * 9 7 2 11 11 O 1.21774 * 120.00209 * 2.93940 * 10 9 7 12 12 C 1.41838 * 119.99409 * 182.94534 * 10 9 7 13 13 C 1.35139 * 119.99335 * 173.83629 * 12 10 9 14 14 C 1.46908 * 120.00132 * 350.09196 * 13 12 10 15 15 C 1.39918 * 120.21977 * 310.51350 * 14 13 12 16 16 C 1.37779 * 119.88955 * 179.97438 * 15 14 13 17 17 C 1.38571 * 120.33679 * 359.97438 * 16 15 14 18 18 C 1.38147 * 120.44313 * 0.03474 * 17 16 15 19 19 C 1.38672 * 120.10084 * 359.70102 * 18 17 16 20 20 N 1.39732 * 120.16440 * 180.29891 * 19 18 17 21 21 C 1.35836 * 126.10496 * 354.53230 * 20 19 18 22 22 C 1.35296 * 107.61637 * 179.97438 * 21 20 19 23 23 C 1.39945 * 107.97005 * 0.02562 * 22 21 20 24 24 N 1.30849 * 108.36482 * 359.74246 * 23 22 21 25 25 C 1.46501 * 119.99725 * 17.14174 * 9 7 2 26 26 C 1.52993 * 117.49857 * 130.02714 * 25 9 7 27 27 C 1.52999 * 117.49948 * 61.36677 * 25 9 7 28 28 H 0.96998 * 119.99829 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00475 * 353.55401 * 12 10 9 30 30 H 1.08001 * 119.99235 * 170.09509 * 13 12 10 31 31 H 1.08001 * 120.05253 * 0.02562 * 15 14 13 32 32 H 1.08003 * 119.83350 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.77916 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.94765 * 179.97438 * 18 17 16 35 35 H 1.08005 * 126.19480 * 359.96239 * 21 20 19 36 36 H 1.08003 * 126.01785 * 179.97438 * 22 21 20 37 37 H 1.08001 * 125.82299 * 180.02562 * 23 22 21 38 38 H 1.08995 * 115.54687 * 275.69191 * 25 9 7 39 39 H 1.09007 * 117.50110 * 359.97438 * 26 25 9 40 40 H 1.09008 * 117.50076 * 145.01669 * 26 25 9 41 41 H 1.09007 * 117.49315 * 214.97493 * 27 25 9 42 42 H 1.08997 * 117.50175 * 359.97308 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.7073 1.3464 0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8885 2.3965 1.2124 7 6 2.0089 -1.2046 0.0005 8 1 3.0708 -1.2150 0.1972 9 7 1.3482 -2.3757 -0.2480 10 6 1.9151 -3.5527 0.0834 11 8 2.9915 -3.5713 0.6525 12 6 1.2578 -4.7697 -0.2308 13 6 1.8799 -5.9494 -0.0124 14 6 3.3054 -5.9736 0.3418 15 6 4.2319 -5.2497 -0.4167 16 6 5.5672 -5.2769 -0.0781 17 6 5.9982 -6.0175 1.0109 18 6 5.0954 -6.7375 1.7692 19 6 3.7465 -6.7187 1.4481 20 7 2.8313 -7.4415 2.2179 21 6 3.1340 -8.2842 3.2394 22 6 1.9704 -8.7799 3.7197 23 6 0.9243 -8.2269 2.9725 24 7 1.4376 -7.4223 2.0773 25 6 0.0241 -2.3509 -0.8745 26 6 -0.2028 -3.2615 -2.0828 27 6 -0.0829 -1.7478 -2.2765 28 1 -0.4850 0.8400 0.0004 29 1 0.2587 -4.7538 -0.6404 30 1 1.3289 -6.8743 -0.0983 31 1 3.9008 -4.6700 -1.2656 32 1 6.2816 -4.7181 -0.6645 33 1 7.0469 -6.0321 1.2684 34 1 5.4401 -7.3123 2.6160 35 1 4.1243 -8.5167 3.6023 36 1 1.8670 -9.4799 4.5357 37 1 -0.1277 -8.4264 3.1137 38 1 -0.8145 -2.1977 -0.1953 39 1 0.6332 -3.8787 -2.4120 40 1 -1.1909 -3.7070 -2.1988 41 1 -0.9922 -1.1981 -2.5197 42 1 0.8317 -1.3690 -2.7326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492027764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:28 Heat of formation + Delta-G solvation = 158.922795 kcal Electronic energy + Delta-G solvation = -27144.238913 eV Core-core repulsion = 23480.211648 eV Total energy + Delta-G solvation = -3664.027264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28491 -39.34841 -38.31428 -36.11770 -33.66018 -33.24046 -32.58870 -31.13695 -30.08731 -29.48420 -28.42816 -25.52531 -23.54503 -23.17258 -21.96668 -21.47493 -20.83856 -20.42207 -20.15931 -18.27191 -17.54205 -17.02968 -16.26445 -15.28696 -15.13727 -15.04286 -15.01757 -14.53301 -14.19344 -14.00310 -13.57533 -13.51616 -13.32705 -12.90316 -12.67739 -12.56626 -12.46594 -12.25252 -11.75279 -11.31367 -11.16224 -11.05204 -10.79611 -10.72425 -10.55872 -10.41138 -10.34260 -10.05820 -9.84282 -9.46437 -9.13887 -8.96799 -8.87653 -8.34451 -7.93210 -7.65082 -7.33354 -6.36005 -3.81548 1.11145 1.48855 2.42065 2.47822 2.64519 2.89445 3.15130 3.22234 3.28513 4.08804 4.23112 4.47604 4.66998 4.70190 4.83568 4.88171 5.15426 5.16562 5.22107 5.41029 5.45878 5.64618 5.69009 5.76302 5.80229 5.89730 5.96213 6.00752 6.05141 6.11299 6.24765 6.31015 6.41565 6.55099 6.68330 6.70759 6.75177 6.86619 6.90937 7.05805 7.08953 7.17723 7.26727 7.50480 7.50691 7.81842 8.10291 8.49655 9.19395 9.41644 10.05369 10.65603 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.004123 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.437519 B = 6789.683072 C = 7512.582737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.035 3.965 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.407 5.407 10 C 0.460 3.540 11 O -0.584 6.584 12 C -0.175 4.175 13 C -0.062 4.062 14 C -0.019 4.019 15 C -0.015 4.015 16 C -0.136 4.136 17 C -0.100 4.100 18 C -0.153 4.153 19 C 0.147 3.853 20 N -0.307 5.307 21 C 0.046 3.954 22 C -0.268 4.268 23 C 0.038 3.962 24 N -0.273 5.273 25 C 0.136 3.864 26 C -0.225 4.225 27 C -0.151 4.151 28 H 0.268 0.732 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.184 0.816 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -13.761 0.235 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.170 4.170 3 Si 0.749 3.251 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.122 5.122 10 C 0.254 3.746 11 O -0.472 6.472 12 C -0.196 4.196 13 C -0.084 4.084 14 C -0.021 4.021 15 C -0.034 4.034 16 C -0.155 4.155 17 C -0.119 4.119 18 C -0.174 4.174 19 C 0.055 3.945 20 N -0.082 5.082 21 C -0.097 4.097 22 C -0.297 4.297 23 C -0.149 4.149 24 N -0.092 5.092 25 C 0.031 3.969 26 C -0.263 4.263 27 C -0.189 4.189 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.201 0.799 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.338 -12.699 -0.477 13.139 hybrid contribution 0.170 0.574 0.914 1.092 sum 3.507 -12.125 0.437 12.630 Atomic orbital electron populations 1.69897 1.05973 1.27413 1.46802 1.25309 0.95445 0.99668 0.96627 0.85908 0.79975 0.81368 0.77810 1.19207 1.20588 1.20721 1.19757 0.94264 0.82650 1.45826 0.87854 1.43287 1.14476 1.05560 1.48911 1.16864 0.88031 0.83914 0.85798 1.90702 1.23016 1.86520 1.46990 1.22508 1.01523 0.93373 1.02200 1.21921 0.91664 0.97560 0.97299 1.18551 0.94273 0.95740 0.93545 1.20969 0.91765 0.92531 0.98184 1.20940 0.95886 1.00325 0.98335 1.20782 0.98690 0.97068 0.95324 1.20434 0.90521 1.04294 1.02107 1.17545 0.87132 0.96908 0.92960 1.45916 1.04619 1.32698 1.24956 1.22684 1.00777 0.94615 0.91594 1.21492 0.91284 1.09850 1.07044 1.24066 1.00531 0.95885 0.94380 1.77618 0.86660 1.21671 1.23248 1.21197 0.87851 0.99738 0.88141 1.23652 1.01900 0.94563 1.06140 1.22795 1.02037 0.92910 1.01111 0.92162 0.85550 0.85417 0.86044 0.86193 0.86004 0.86249 0.80962 0.83373 0.79862 0.86762 0.89293 0.89206 0.89654 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.26 10.22 55.50 0.57 -21.69 16 2 C 0.03 0.89 5.02 -17.44 -0.09 0.81 16 3 Si 0.92 20.51 29.57 -169.99 -5.03 15.48 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.14 9.25 -15.04 -0.14 -8.27 16 8 H 0.10 2.99 7.34 -52.49 -0.39 2.60 16 9 N -0.41 -10.36 2.93 -110.88 -0.32 -10.69 16 10 C 0.46 11.39 6.62 -14.88 -0.10 11.30 16 11 O -0.58 -15.79 11.87 5.12 0.06 -15.73 16 12 C -0.18 -3.62 7.87 -39.31 -0.31 -3.93 16 13 C -0.06 -1.20 7.76 -37.18 -0.29 -1.49 16 14 C -0.02 -0.37 4.30 -104.91 -0.45 -0.82 16 15 C -0.02 -0.29 6.77 -39.12 -0.26 -0.56 16 16 C -0.14 -2.22 10.02 -39.63 -0.40 -2.62 16 17 C -0.10 -1.46 10.03 -39.49 -0.40 -1.85 16 18 C -0.15 -2.31 9.45 -39.45 -0.37 -2.69 16 19 C 0.15 2.62 6.70 -83.25 -0.56 2.07 16 20 N -0.31 -5.16 3.80 -10.31 -0.04 -5.20 16 21 C 0.05 0.61 10.81 -16.83 -0.18 0.43 16 22 C -0.27 -3.21 10.80 -39.99 -0.43 -3.64 16 23 C 0.04 0.51 12.02 -17.33 -0.21 0.30 16 24 N -0.27 -4.69 9.24 30.64 0.28 -4.41 16 25 C 0.14 3.05 3.57 -67.93 -0.24 2.80 16 26 C -0.22 -4.04 7.82 -26.70 -0.21 -4.25 16 27 C -0.15 -3.04 9.13 -26.70 -0.24 -3.29 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.13 2.37 5.21 -52.49 -0.27 2.10 16 30 H 0.13 2.24 6.98 -52.49 -0.37 1.88 16 31 H 0.12 2.36 7.51 -52.49 -0.39 1.96 16 32 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.42 6.77 -52.49 -0.36 1.06 16 35 H 0.17 1.64 7.09 -52.48 -0.37 1.27 16 36 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.11 2.72 7.60 -51.93 -0.39 2.33 16 39 H 0.09 1.59 7.01 -51.93 -0.36 1.23 16 40 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -32.01 347.36 -9.12 -41.13 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.00 Total: 11.57 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -4.88 Total: -15.70 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.49 Total: -41.99 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.06 Total: -15.73 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.01 -9.12 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492027764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.056 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds