Wall clock time and date at job start Tue Mar 31 2020 13:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31338 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48500 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47262 * 299.99822 * 3 2 1 6 6 H 1.48496 * 109.47260 * 59.99808 * 3 2 1 7 7 C 1.39101 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00211 * 192.13550 * 7 2 1 9 9 N 1.36737 * 120.00076 * 12.13985 * 7 2 1 10 10 C 1.34777 * 119.99863 * 197.14006 * 9 7 2 11 11 O 1.21774 * 120.00209 * 2.93940 * 10 9 7 12 12 C 1.41838 * 119.99409 * 182.94534 * 10 9 7 13 13 C 1.35139 * 119.99335 * 173.83629 * 12 10 9 14 14 C 1.46908 * 120.00132 * 350.09196 * 13 12 10 15 15 C 1.39918 * 120.21977 * 310.51350 * 14 13 12 16 16 C 1.37779 * 119.88955 * 179.97438 * 15 14 13 17 17 C 1.38571 * 120.33679 * 359.97438 * 16 15 14 18 18 C 1.38147 * 120.44313 * 0.03474 * 17 16 15 19 19 C 1.38672 * 120.10084 * 359.70102 * 18 17 16 20 20 N 1.39732 * 120.16440 * 180.29891 * 19 18 17 21 21 C 1.35836 * 126.10496 * 354.53230 * 20 19 18 22 22 C 1.35296 * 107.61637 * 179.97438 * 21 20 19 23 23 C 1.39945 * 107.97005 * 0.02562 * 22 21 20 24 24 N 1.30849 * 108.36482 * 359.74246 * 23 22 21 25 25 C 1.46501 * 119.99725 * 17.14174 * 9 7 2 26 26 C 1.52993 * 117.49857 * 130.02714 * 25 9 7 27 27 C 1.52999 * 117.49948 * 61.36677 * 25 9 7 28 28 H 0.96998 * 119.99829 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00475 * 353.55401 * 12 10 9 30 30 H 1.08001 * 119.99235 * 170.09509 * 13 12 10 31 31 H 1.08001 * 120.05253 * 0.02562 * 15 14 13 32 32 H 1.08003 * 119.83350 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.77916 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.94765 * 179.97438 * 18 17 16 35 35 H 1.08005 * 126.19480 * 359.96239 * 21 20 19 36 36 H 1.08003 * 126.01785 * 179.97438 * 22 21 20 37 37 H 1.08001 * 125.82299 * 180.02562 * 23 22 21 38 38 H 1.08995 * 115.54687 * 275.69191 * 25 9 7 39 39 H 1.09007 * 117.50110 * 359.97438 * 26 25 9 40 40 H 1.09008 * 117.50076 * 145.01669 * 26 25 9 41 41 H 1.09007 * 117.49315 * 214.97493 * 27 25 9 42 42 H 1.08997 * 117.50175 * 359.97308 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 3.7073 1.3464 0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8885 2.3965 1.2124 7 6 2.0089 -1.2046 0.0005 8 1 3.0708 -1.2150 0.1972 9 7 1.3482 -2.3757 -0.2480 10 6 1.9151 -3.5527 0.0834 11 8 2.9915 -3.5713 0.6525 12 6 1.2578 -4.7697 -0.2308 13 6 1.8799 -5.9494 -0.0124 14 6 3.3054 -5.9736 0.3418 15 6 4.2319 -5.2497 -0.4167 16 6 5.5672 -5.2769 -0.0781 17 6 5.9982 -6.0175 1.0109 18 6 5.0954 -6.7375 1.7692 19 6 3.7465 -6.7187 1.4481 20 7 2.8313 -7.4415 2.2179 21 6 3.1340 -8.2842 3.2394 22 6 1.9704 -8.7799 3.7197 23 6 0.9243 -8.2269 2.9725 24 7 1.4376 -7.4223 2.0773 25 6 0.0241 -2.3509 -0.8745 26 6 -0.2028 -3.2615 -2.0828 27 6 -0.0829 -1.7478 -2.2765 28 1 -0.4850 0.8400 0.0004 29 1 0.2587 -4.7538 -0.6404 30 1 1.3289 -6.8743 -0.0983 31 1 3.9008 -4.6700 -1.2656 32 1 6.2816 -4.7181 -0.6645 33 1 7.0469 -6.0321 1.2684 34 1 5.4401 -7.3123 2.6160 35 1 4.1243 -8.5167 3.6023 36 1 1.8670 -9.4799 4.5357 37 1 -0.1277 -8.4264 3.1137 38 1 -0.8145 -2.1977 -0.1953 39 1 0.6332 -3.8787 -2.4120 40 1 -1.1909 -3.7070 -2.1988 41 1 -0.9922 -1.1981 -2.5197 42 1 0.8317 -1.3690 -2.7326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492027764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:27 Heat of formation + Delta-G solvation = 141.923882 kcal Electronic energy + Delta-G solvation = -27144.976041 eV Core-core repulsion = 23480.211648 eV Total energy + Delta-G solvation = -3664.764393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38084 -41.01641 -39.70272 -37.85192 -35.34871 -34.50566 -34.18869 -33.02980 -31.22355 -30.79672 -29.66936 -27.36342 -25.07875 -24.33766 -23.47937 -23.12817 -22.37075 -21.58292 -21.35850 -19.76372 -18.96301 -18.81031 -17.85310 -17.04867 -16.52529 -16.37569 -16.21370 -15.95252 -15.77973 -15.55803 -15.10681 -14.93034 -14.52182 -14.41909 -14.19497 -14.00916 -13.67405 -13.55861 -13.35046 -12.99337 -12.94436 -12.43226 -12.40040 -12.27903 -12.13816 -12.08726 -11.66239 -11.62185 -11.24184 -11.08895 -10.74404 -10.55655 -10.11848 -10.03397 -9.69019 -9.12911 -8.74230 -8.28764 -5.85951 -0.17843 0.18267 0.96181 1.33226 1.37831 1.38002 1.50578 1.54282 1.93005 2.25615 2.61138 2.93626 3.03091 3.17286 3.28073 3.58718 3.83923 3.98204 4.06030 4.12412 4.18382 4.21928 4.36315 4.39939 4.49295 4.57546 4.65875 4.69506 4.80648 4.81754 4.85507 5.08014 5.08849 5.11006 5.24365 5.31330 5.36294 5.42672 5.46083 5.52988 5.58210 5.71052 5.78397 5.92684 6.12631 6.33734 6.57559 6.74711 7.23009 7.52872 8.15477 8.70476 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.004123 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.437519 B = 6789.683072 C = 7512.582737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.277 1.277 7 C -0.335 4.335 8 H 0.072 0.928 9 N -0.424 5.424 10 C 0.460 3.540 11 O -0.616 6.616 12 C -0.204 4.204 13 C -0.023 4.023 14 C -0.064 4.064 15 C -0.035 4.035 16 C -0.150 4.150 17 C -0.088 4.088 18 C -0.154 4.154 19 C 0.139 3.861 20 N -0.331 5.331 21 C 0.040 3.960 22 C -0.261 4.261 23 C 0.040 3.960 24 N -0.329 5.329 25 C 0.109 3.891 26 C -0.183 4.183 27 C -0.150 4.150 28 H 0.272 0.728 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.209 0.791 36 H 0.185 0.815 37 H 0.214 0.786 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -15.940 1.309 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.197 4.197 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.203 1.203 7 C -0.463 4.463 8 H 0.090 0.910 9 N -0.140 5.140 10 C 0.254 3.746 11 O -0.506 6.506 12 C -0.225 4.225 13 C -0.045 4.045 14 C -0.066 4.066 15 C -0.054 4.054 16 C -0.169 4.169 17 C -0.107 4.107 18 C -0.174 4.174 19 C 0.047 3.953 20 N -0.107 5.107 21 C -0.101 4.101 22 C -0.289 4.289 23 C -0.146 4.146 24 N -0.148 5.148 25 C 0.004 3.996 26 C -0.220 4.220 27 C -0.187 4.187 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.116 0.884 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.225 0.775 36 H 0.202 0.798 37 H 0.230 0.770 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.115 0.885 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.788 -14.905 0.594 15.391 hybrid contribution 0.102 0.974 0.732 1.223 sum 3.891 -13.931 1.326 14.525 Atomic orbital electron populations 1.69988 1.06543 1.28138 1.46704 1.25922 0.96298 1.01722 0.95801 0.85063 0.78270 0.77886 0.78283 1.20095 1.19042 1.20274 1.19578 0.93389 0.84528 1.48833 0.91029 1.43379 1.15535 1.05107 1.50018 1.17493 0.87546 0.84958 0.84586 1.90656 1.24418 1.87368 1.48170 1.22344 1.02424 0.92128 1.05604 1.22195 0.91903 0.97423 0.92932 1.18728 0.94251 0.98098 0.95560 1.20919 0.93286 0.92996 0.98233 1.21253 0.95174 1.00962 0.99467 1.21284 1.00713 0.95021 0.93639 1.20931 0.89390 1.04135 1.02956 1.17841 0.88608 0.96342 0.92551 1.46018 1.04425 1.33995 1.26229 1.23444 1.02952 0.93346 0.90325 1.21976 0.90229 1.09523 1.07183 1.24731 1.02362 0.94325 0.93199 1.77508 0.87508 1.24099 1.25714 1.21092 0.85970 1.03823 0.88717 1.23675 1.03761 0.93194 1.01390 1.22732 1.01630 0.94937 0.99442 0.91801 0.83882 0.83934 0.88380 0.84546 0.81875 0.82422 0.77478 0.79812 0.77000 0.88796 0.89174 0.85509 0.88481 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.39 10.22 21.69 0.22 -46.17 16 2 C 0.01 0.33 5.02 84.97 0.43 0.76 16 3 Si 0.98 43.30 29.57 68.60 2.03 45.33 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.34 -19.48 9.25 84.14 0.78 -18.71 16 8 H 0.07 4.48 7.34 -2.91 -0.02 4.46 16 9 N -0.42 -22.82 2.93 -622.90 -1.82 -24.65 16 10 C 0.46 24.03 6.62 85.13 0.56 24.60 16 11 O -0.62 -35.31 11.87 -4.59 -0.05 -35.37 16 12 C -0.20 -8.75 7.87 22.45 0.18 -8.57 16 13 C -0.02 -0.90 7.76 23.83 0.18 -0.72 16 14 C -0.06 -2.55 4.30 -20.05 -0.09 -2.63 16 15 C -0.04 -1.39 6.77 22.57 0.15 -1.24 16 16 C -0.15 -4.89 10.02 22.24 0.22 -4.66 16 17 C -0.09 -2.37 10.03 22.33 0.22 -2.14 16 18 C -0.15 -4.28 9.45 22.35 0.21 -4.06 16 19 C 0.14 4.88 6.70 38.53 0.26 5.14 16 20 N -0.33 -10.64 3.80 -186.54 -0.71 -11.35 16 21 C 0.04 0.93 10.81 83.39 0.90 1.84 16 22 C -0.26 -5.33 10.80 22.00 0.24 -5.09 16 23 C 0.04 0.99 12.02 85.25 1.02 2.01 16 24 N -0.33 -11.01 9.24 -56.97 -0.53 -11.53 16 25 C 0.11 5.03 3.57 44.99 0.16 5.19 16 26 C -0.18 -6.48 7.82 30.62 0.24 -6.24 16 27 C -0.15 -6.14 9.13 30.62 0.28 -5.86 16 28 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.14 5.44 5.21 -2.91 -0.02 5.42 16 30 H 0.14 5.04 6.98 -2.91 -0.02 5.02 16 31 H 0.10 4.16 7.51 -2.91 -0.02 4.14 16 32 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.16 3.05 6.77 -2.91 -0.02 3.03 16 35 H 0.21 2.98 7.09 -2.91 -0.02 2.96 16 36 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.21 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.09 4.66 7.60 -2.39 -0.02 4.64 16 39 H 0.09 3.22 7.01 -2.38 -0.02 3.20 16 40 H 0.13 3.57 8.14 -2.38 -0.02 3.55 16 41 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -75.19 347.36 6.14 -69.05 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 1.04 Total: 35.08 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.96 Total: -20.40 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -2.84 Total: -93.69 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.05 Total: -35.37 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.19 6.14 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492027764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.974 kcal (2) G-P(sol) polarization free energy of solvation -75.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds