Wall clock time and date at job start Tue Mar 31 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00110 * 2 1 4 4 H 1.48501 * 109.47271 * 270.00062 * 3 2 1 5 5 H 1.48498 * 109.47291 * 29.99807 * 3 2 1 6 6 H 1.48505 * 109.47237 * 150.00209 * 3 2 1 7 7 C 1.37882 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99683 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46751 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47697 * 54.99787 * 10 9 7 12 12 N 1.46500 * 109.47369 * 294.99698 * 10 9 7 13 13 C 1.34770 * 120.00240 * 154.99867 * 12 10 9 14 14 O 1.21668 * 120.00189 * 0.02562 * 13 12 10 15 15 C 1.46662 * 119.99796 * 180.02562 * 13 12 10 16 16 C 1.34668 * 119.99449 * 180.02562 * 15 13 12 17 17 C 1.47367 * 119.99467 * 180.02562 * 16 15 13 18 18 C 1.39822 * 120.13055 * 179.72225 * 17 16 15 19 19 N 1.31984 * 119.83070 * 179.72922 * 18 17 16 20 20 C 1.32207 * 120.10460 * 0.52215 * 19 18 17 21 21 C 1.38649 * 120.27343 * 359.75459 * 20 19 18 22 22 N 1.31852 * 120.16315 * 359.97438 * 21 20 19 23 23 C 1.50703 * 109.47337 * 174.99484 * 10 9 7 24 24 C 1.38235 * 120.00292 * 260.00106 * 23 10 9 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 10 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 79.97399 * 23 10 9 29 29 H 0.97001 * 119.99717 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47518 * 60.00239 * 9 7 2 31 31 H 1.09003 * 109.47035 * 299.99390 * 9 7 2 32 32 H 0.96997 * 119.99726 * 335.00257 * 12 10 9 33 33 H 1.07989 * 120.00423 * 359.97438 * 15 13 12 34 34 H 1.07993 * 120.00615 * 359.97438 * 16 15 13 35 35 H 1.07997 * 120.08399 * 0.02562 * 18 17 16 36 36 H 1.08009 * 119.86406 * 179.72902 * 20 19 18 37 37 H 1.07997 * 119.92046 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.99730 * 359.97438 * 24 23 10 39 39 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 40 40 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 41 41 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.00455 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9288 -3.5556 0.8409 12 7 3.0072 -3.6535 -1.2527 13 6 4.2319 -4.2140 -1.2998 14 8 4.7046 -4.7277 -0.3033 15 6 4.9948 -4.2049 -2.5523 16 6 6.2184 -4.7655 -2.5994 17 6 6.9852 -4.7558 -3.8578 18 6 8.2582 -5.3319 -3.9084 19 7 8.9376 -5.3246 -5.0399 20 6 8.4205 -4.7650 -6.1203 21 6 7.1610 -4.1873 -6.0736 22 7 6.4707 -4.1933 -4.9502 23 6 1.4958 -4.9638 0.1213 24 6 1.4091 -5.5986 1.3462 25 6 0.7212 -6.7923 1.4589 26 6 0.1192 -7.3507 0.3469 27 6 0.2047 -6.7152 -0.8777 28 6 0.8945 -5.5226 -0.9909 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.6303 -3.2442 -2.0472 33 1 4.5752 -3.7493 -3.4369 34 1 6.6379 -5.2214 -1.7149 35 1 8.6825 -5.7859 -3.0251 36 1 8.9818 -4.7574 -7.0431 37 1 6.7442 -3.7314 -6.9594 38 1 1.8789 -5.1619 2.2152 39 1 0.6538 -7.2885 2.4158 40 1 -0.4145 -8.2856 0.4339 41 1 -0.2653 -7.1517 -1.7467 42 1 0.9622 -5.0267 -1.9479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492223517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:16 Heat of formation + Delta-G solvation = 26.803432 kcal Electronic energy + Delta-G solvation = -25384.284197 eV Core-core repulsion = 21714.527808 eV Total energy + Delta-G solvation = -3669.756390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.96559 -41.06524 -39.73991 -36.90558 -35.91863 -34.73315 -34.45254 -32.71394 -31.71810 -31.30385 -30.51853 -27.16262 -26.18977 -25.39723 -23.82291 -23.52825 -23.00775 -21.29647 -20.70185 -18.99830 -18.61829 -18.06610 -17.78455 -17.66752 -16.97147 -16.73269 -16.41440 -16.24406 -15.84380 -15.45981 -15.45438 -14.99950 -14.61342 -14.43723 -14.18683 -14.09614 -13.84887 -13.66315 -13.41997 -13.10843 -12.94336 -12.64019 -12.61782 -12.53195 -12.47266 -12.15336 -11.87912 -11.60312 -11.43948 -11.34044 -11.02701 -10.58550 -10.12497 -10.06049 -9.75907 -9.65513 -9.51859 -8.21060 -6.31208 -0.79008 0.06408 0.50960 0.56052 0.77703 1.38614 1.40234 1.50661 2.26375 2.32069 2.39396 2.82339 2.94459 3.00959 3.13338 3.30908 3.45063 3.70717 3.97913 4.03408 4.09615 4.13511 4.21293 4.26589 4.32528 4.42725 4.49211 4.57721 4.64941 4.75404 4.78791 5.10080 5.12658 5.20110 5.22038 5.28451 5.38609 5.42489 5.59913 5.61234 5.64277 5.77225 5.90288 6.15501 6.20114 6.25470 6.66621 6.74801 6.81413 7.28586 7.37851 8.89699 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.003765 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.573999 B = 7434.179760 C =10131.914200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.038 3.962 10 C 0.199 3.801 11 H 0.060 0.940 12 N -0.689 5.689 13 C 0.537 3.463 14 O -0.586 6.586 15 C -0.157 4.157 16 C -0.034 4.034 17 C 0.081 3.919 18 C 0.069 3.931 19 N -0.460 5.460 20 C 0.057 3.943 21 C 0.055 3.945 22 N -0.455 5.455 23 C -0.098 4.098 24 C -0.132 4.132 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.264 0.736 30 H 0.012 0.988 31 H 0.005 0.995 32 H 0.409 0.591 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.193 0.807 36 H 0.209 0.791 37 H 0.206 0.794 38 H 0.114 0.886 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 -13.274 -11.665 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.094 3.906 11 H 0.079 0.921 12 N -0.336 5.336 13 C 0.327 3.673 14 O -0.469 6.469 15 C -0.180 4.180 16 C -0.055 4.055 17 C -0.056 4.056 18 C -0.090 4.090 19 N -0.174 5.174 20 C -0.103 4.103 21 C -0.107 4.107 22 N -0.171 5.171 23 C -0.099 4.099 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.023 0.977 32 H 0.245 0.755 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.210 0.790 36 H 0.225 0.775 37 H 0.222 0.778 38 H 0.132 0.868 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.623 -13.501 -10.949 20.371 hybrid contribution -0.108 1.532 -0.021 1.536 sum 10.514 -11.969 -10.969 19.343 Atomic orbital electron populations 1.70071 1.07438 1.27748 1.51268 1.25768 0.95570 1.02623 0.94740 0.85589 0.78502 0.79266 0.78539 1.19524 1.20813 1.19734 1.21407 0.92999 0.91643 1.50821 0.92873 1.19128 0.93264 0.91059 0.96458 1.19764 0.92220 0.92103 0.86489 0.92140 1.45802 1.16886 1.57134 1.13827 1.18815 0.81517 0.77866 0.89114 1.90736 1.70419 1.47693 1.38005 1.23065 0.96204 1.01927 0.96799 1.22123 0.93082 0.95604 0.94683 1.20955 0.94243 0.97169 0.93202 1.24188 0.91018 0.95822 0.97943 1.68535 1.34841 1.14250 0.99785 1.24578 0.94654 0.92446 0.98576 1.24435 0.92932 0.96485 0.96838 1.68487 1.35674 1.13209 0.99709 1.20428 0.98449 0.96224 0.94810 1.21183 1.00413 0.96576 0.96923 1.21394 0.97442 0.95130 1.00153 1.21474 0.99909 1.00912 0.92372 1.21438 0.98880 0.94994 0.98985 1.21074 0.98129 0.96775 0.98054 0.92690 0.96951 0.97697 0.75480 0.83347 0.83068 0.79011 0.77477 0.77781 0.86808 0.83753 0.83071 0.83656 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 2 C 0.01 0.65 5.46 84.66 0.46 1.12 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.53 -29.08 8.84 25.60 0.23 -28.85 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.94 4.49 29.85 0.13 2.07 16 10 C 0.20 8.60 2.11 44.25 0.09 8.70 16 11 H 0.06 2.90 7.44 -2.39 -0.02 2.88 16 12 N -0.69 -26.08 4.03 -450.12 -1.81 -27.89 16 13 C 0.54 19.73 7.71 86.44 0.67 20.39 16 14 O -0.59 -25.11 15.90 -4.25 -0.07 -25.17 16 15 C -0.16 -4.53 9.56 23.65 0.23 -4.31 16 16 C -0.03 -0.85 9.46 23.86 0.23 -0.62 16 17 C 0.08 1.77 6.70 41.72 0.28 2.05 16 18 C 0.07 1.28 10.98 85.05 0.93 2.21 16 19 N -0.46 -8.32 10.49 -193.89 -2.03 -10.35 16 20 C 0.06 0.73 11.22 84.73 0.95 1.68 16 21 C 0.06 0.79 11.22 84.79 0.95 1.74 16 22 N -0.46 -9.87 9.51 -184.66 -1.76 -11.62 16 23 C -0.10 -3.79 4.91 -19.87 -0.10 -3.89 16 24 C -0.13 -4.75 9.67 22.27 0.22 -4.54 16 25 C -0.12 -3.56 10.05 22.27 0.22 -3.33 16 26 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 27 C -0.13 -3.49 10.05 22.27 0.22 -3.26 16 28 C -0.12 -4.14 9.32 22.27 0.21 -3.94 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.41 14.23 8.58 -92.71 -0.80 13.43 16 33 H 0.15 3.91 7.43 -2.92 -0.02 3.89 16 34 H 0.15 3.62 7.52 -2.91 -0.02 3.59 16 35 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.21 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 39 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 42 H 0.12 3.84 7.72 -2.91 -0.02 3.82 16 Total: -1.00 -73.81 373.27 3.03 -70.77 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.25 Total: 28.32 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 6.15 Total: -15.87 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -5.32 Total: -103.83 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.07 Total: -25.17 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -73.81 3.03 -70.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492223517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.577 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds