Wall clock time and date at job start Tue Mar 31 2020 13:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48497 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47185 * 300.00681 * 3 2 1 6 6 H 1.48500 * 109.46848 * 60.00668 * 3 2 1 7 7 C 1.37876 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00279 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47477 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.46598 * 304.99806 * 10 9 7 12 12 N 1.46500 * 109.46941 * 64.99508 * 10 9 7 13 13 C 1.34779 * 119.99620 * 204.99998 * 12 10 9 14 14 O 1.21665 * 120.00212 * 0.02562 * 13 12 10 15 15 C 1.46659 * 119.99968 * 180.02562 * 13 12 10 16 16 C 1.34659 * 120.00149 * 191.04631 * 15 13 12 17 17 C 1.47363 * 120.00108 * 32.11180 * 16 15 13 18 18 C 1.39817 * 120.13610 * 186.63184 * 17 16 15 19 19 N 1.31982 * 119.83477 * 179.72976 * 18 17 16 20 20 C 1.32205 * 120.10743 * 0.51893 * 19 18 17 21 21 C 1.38659 * 120.26685 * 359.75881 * 20 19 18 22 22 N 1.31843 * 120.16695 * 359.96949 * 21 20 19 23 23 C 1.50696 * 109.47197 * 184.99880 * 10 9 7 24 24 C 1.38238 * 120.00096 * 279.72270 * 23 10 9 25 25 C 1.38228 * 119.99915 * 179.80982 * 24 23 10 26 26 C 1.38232 * 120.00543 * 0.40114 * 25 24 23 27 27 C 1.38242 * 119.99667 * 359.85055 * 26 25 24 28 28 C 1.38236 * 120.00037 * 359.96175 * 27 26 25 29 29 H 0.97003 * 119.99543 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47477 * 60.00148 * 9 7 2 31 31 H 1.09002 * 109.46994 * 300.00098 * 9 7 2 32 32 H 0.96992 * 120.00468 * 25.00601 * 12 10 9 33 33 H 1.08003 * 119.99779 * 10.76879 * 15 13 12 34 34 H 1.07998 * 119.99979 * 212.11430 * 16 15 13 35 35 H 1.08004 * 120.08550 * 359.97438 * 18 17 16 36 36 H 1.07998 * 119.86743 * 179.72588 * 20 19 18 37 37 H 1.08003 * 119.91566 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.99630 * 0.02562 * 24 23 10 39 39 H 1.08001 * 119.99955 * 180.22911 * 25 24 23 40 40 H 1.07998 * 120.00804 * 179.83194 * 26 25 24 41 41 H 1.08002 * 120.00253 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.00222 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9292 -3.5553 -0.8424 12 7 3.0062 -3.6540 1.2512 13 6 4.2309 -4.2147 1.2989 14 8 4.7045 -4.7272 0.3023 15 6 4.9926 -4.2070 2.5521 16 6 6.2918 -4.5612 2.5526 17 6 7.1326 -4.2800 1.3755 18 6 8.4416 -4.7675 1.3153 19 7 9.1877 -4.5166 0.2559 20 6 8.7024 -3.7976 -0.7417 21 6 7.4067 -3.3071 -0.6841 22 7 6.6503 -3.5558 0.3668 23 6 1.4957 -4.9637 -0.1243 24 6 0.8989 -5.5262 0.9885 25 6 0.2081 -6.7180 0.8741 26 6 0.1211 -7.3517 -0.3513 27 6 0.7223 -6.7918 -1.4632 28 6 1.4098 -5.5980 -1.3496 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6246 -2.5570 0.8897 32 1 2.6288 -3.2451 2.0457 33 1 4.5127 -3.9130 3.4739 34 1 6.7175 -5.0514 3.4156 35 1 8.8401 -5.3513 2.1320 36 1 9.3178 -3.5909 -1.6048 37 1 7.0162 -2.7199 -1.5021 38 1 0.9694 -5.0326 1.9465 39 1 -0.2613 -7.1556 1.7428 40 1 -0.4163 -8.2843 -0.4402 41 1 0.6547 -7.2871 -2.4206 42 1 1.8799 -5.1608 -2.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492223518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:20 Heat of formation + Delta-G solvation = 52.148137 kcal Electronic energy + Delta-G solvation = -26383.611967 eV Core-core repulsion = 22714.954607 eV Total energy + Delta-G solvation = -3668.657361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.88517 -40.85696 -39.60901 -36.84839 -35.53479 -34.65903 -34.35000 -32.60165 -31.71272 -31.18094 -30.48770 -27.05139 -26.08886 -25.16291 -23.82846 -23.57898 -23.08644 -21.23546 -20.47201 -18.70283 -18.65333 -18.15701 -17.69134 -17.63166 -17.03276 -16.55815 -16.18483 -16.12050 -15.68260 -15.28597 -15.26489 -14.87212 -14.52338 -14.28050 -14.16783 -14.02596 -14.00060 -13.65663 -13.41046 -13.35828 -12.92709 -12.63995 -12.48537 -12.43326 -12.21181 -12.12990 -11.85927 -11.56673 -11.29818 -11.09457 -10.70993 -10.54531 -10.00750 -9.78721 -9.71537 -9.52482 -9.27931 -8.20379 -6.29543 -0.71624 0.19591 0.52057 0.55755 0.86299 1.36318 1.38835 1.50842 2.39256 2.50475 2.59229 2.95892 2.99613 3.14174 3.20747 3.40201 3.53869 3.90549 4.00009 4.04162 4.14563 4.20954 4.25947 4.31996 4.38614 4.49827 4.59711 4.66731 4.68666 4.77489 4.80927 5.08805 5.13394 5.20023 5.32341 5.34500 5.45715 5.49475 5.61320 5.63393 5.67214 5.79202 5.97873 6.16826 6.21805 6.39943 6.83342 6.89799 6.92462 7.39051 7.60307 8.90742 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007610 B = 0.005246 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3678.569056 B = 5336.000848 C = 7949.613722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.038 3.962 10 C 0.207 3.793 11 H 0.050 0.950 12 N -0.697 5.697 13 C 0.537 3.463 14 O -0.567 6.567 15 C -0.176 4.176 16 C -0.038 4.038 17 C 0.072 3.928 18 C 0.067 3.933 19 N -0.463 5.463 20 C 0.052 3.948 21 C 0.033 3.967 22 N -0.424 5.424 23 C -0.095 4.095 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.136 4.136 29 H 0.263 0.737 30 H -0.001 1.001 31 H 0.012 0.988 32 H 0.405 0.595 33 H 0.175 0.825 34 H 0.201 0.799 35 H 0.207 0.793 36 H 0.198 0.802 37 H 0.168 0.832 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 -12.811 6.363 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.001 3.999 10 C 0.101 3.899 11 H 0.068 0.932 12 N -0.346 5.346 13 C 0.327 3.673 14 O -0.447 6.447 15 C -0.198 4.198 16 C -0.059 4.059 17 C -0.066 4.066 18 C -0.093 4.093 19 N -0.177 5.177 20 C -0.107 4.107 21 C -0.129 4.129 22 N -0.140 5.140 23 C -0.096 4.096 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.154 4.154 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.030 0.970 32 H 0.240 0.760 33 H 0.192 0.808 34 H 0.218 0.782 35 H 0.224 0.776 36 H 0.215 0.785 37 H 0.185 0.815 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.955 -13.038 5.629 17.936 hybrid contribution -0.249 1.607 -0.343 1.662 sum 10.706 -11.431 5.286 16.530 Atomic orbital electron populations 1.70079 1.07399 1.27578 1.51630 1.25749 0.95540 1.02529 0.94904 0.85547 0.78791 0.79728 0.77851 1.19659 1.20715 1.19982 1.21385 0.92849 0.91543 1.50231 0.93111 1.19122 0.93280 0.91346 0.96141 1.19571 0.91861 0.91605 0.86855 0.93162 1.45803 1.17841 1.57772 1.13166 1.18961 0.81097 0.78027 0.89240 1.90705 1.69766 1.46974 1.37218 1.23452 0.96441 1.02011 0.97919 1.22645 0.92633 0.94536 0.96037 1.21599 0.94372 0.96138 0.94448 1.24385 0.90903 0.96664 0.97351 1.68466 1.36440 1.11603 1.01237 1.24225 0.94749 0.93396 0.98338 1.24017 0.92541 0.98963 0.97379 1.68760 1.34546 1.10204 1.00455 1.20493 0.98179 0.96335 0.94636 1.21078 0.98045 0.96665 0.98067 1.21448 0.98777 0.94992 0.98914 1.21461 1.00019 1.00950 0.92411 1.21369 0.97637 0.95144 1.00125 1.21145 1.00615 0.96706 0.96959 0.92762 0.98233 0.97009 0.75997 0.80808 0.78173 0.77600 0.78535 0.81510 0.85948 0.83434 0.83111 0.84077 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.52 -28.97 8.84 25.60 0.23 -28.74 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.04 1.98 4.50 29.85 0.13 2.12 16 10 C 0.21 9.09 2.12 44.25 0.09 9.18 16 11 H 0.05 2.52 7.44 -2.38 -0.02 2.50 16 12 N -0.70 -26.37 4.02 -450.11 -1.81 -28.18 16 13 C 0.54 19.56 6.87 86.44 0.59 20.15 16 14 O -0.57 -24.60 13.17 -4.24 -0.06 -24.66 16 15 C -0.18 -4.45 9.89 23.65 0.23 -4.21 16 16 C -0.04 -0.81 9.77 23.85 0.23 -0.57 16 17 C 0.07 1.97 6.07 41.72 0.25 2.22 16 18 C 0.07 1.48 10.98 85.05 0.93 2.42 16 19 N -0.46 -11.46 10.49 -193.89 -2.03 -13.49 16 20 C 0.05 1.24 11.22 84.74 0.95 2.19 16 21 C 0.03 0.97 11.22 84.79 0.95 1.92 16 22 N -0.42 -14.70 6.70 -184.66 -1.24 -15.93 16 23 C -0.10 -3.75 4.92 -19.86 -0.10 -3.85 16 24 C -0.12 -4.08 9.33 22.27 0.21 -3.87 16 25 C -0.12 -3.44 10.05 22.27 0.22 -3.21 16 26 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 27 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 28 C -0.14 -5.05 9.67 22.27 0.22 -4.83 16 29 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.40 13.89 8.58 -92.71 -0.80 13.10 16 33 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.20 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.17 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.12 3.86 7.71 -2.91 -0.02 3.84 16 39 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.11 4.05 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -79.00 368.07 3.48 -75.52 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.24 Total: 29.59 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 6.06 Total: -14.73 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.79 Total: -112.02 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.06 Total: -24.66 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -79.00 3.48 -75.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492223518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.669 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds