Wall clock time and date at job start Tue Mar 31 2020 13:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 119.99882 * 2 1 4 4 H 1.48506 * 109.47077 * 240.00030 * 3 2 1 5 5 H 1.48500 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47200 * 119.99819 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46909 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47439 * 305.00294 * 10 9 7 12 12 N 1.46503 * 109.47354 * 64.99756 * 10 9 7 13 13 C 1.34775 * 120.00242 * 204.99796 * 12 10 9 14 14 O 1.21660 * 119.99948 * 0.02562 * 13 12 10 15 15 C 1.46663 * 119.99930 * 180.02562 * 13 12 10 16 16 C 1.34659 * 119.99909 * 179.97438 * 15 13 12 17 17 C 1.47364 * 119.99863 * 180.02562 * 16 15 13 18 18 C 1.39816 * 120.13009 * 180.02562 * 17 16 15 19 19 N 1.31986 * 119.82699 * 179.74822 * 18 17 16 20 20 C 1.32198 * 120.11170 * 0.48527 * 19 18 17 21 21 C 1.38659 * 120.26466 * 359.48801 * 20 19 18 22 22 N 1.31846 * 120.17035 * 0.27611 * 21 20 19 23 23 C 1.50703 * 109.47141 * 185.00068 * 10 9 7 24 24 C 1.38233 * 119.99728 * 279.72334 * 23 10 9 25 25 C 1.38236 * 119.99831 * 179.80810 * 24 23 10 26 26 C 1.38240 * 119.99842 * 0.39954 * 25 24 23 27 27 C 1.38238 * 119.99748 * 359.86116 * 26 25 24 28 28 C 1.38224 * 120.00361 * 359.94681 * 27 26 25 29 29 H 0.96996 * 120.00580 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46865 * 60.00613 * 9 7 2 31 31 H 1.08997 * 109.47126 * 299.99812 * 9 7 2 32 32 H 0.97008 * 119.99598 * 25.00199 * 12 10 9 33 33 H 1.07999 * 119.99585 * 0.02562 * 15 13 12 34 34 H 1.07995 * 119.99784 * 0.02562 * 16 15 13 35 35 H 1.07994 * 120.08487 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.87065 * 179.77205 * 20 19 18 37 37 H 1.08001 * 119.91497 * 180.25983 * 21 20 19 38 38 H 1.08000 * 120.00160 * 0.02562 * 24 23 10 39 39 H 1.07993 * 120.00302 * 180.23814 * 25 24 23 40 40 H 1.07999 * 120.00261 * 179.83197 * 26 25 24 41 41 H 1.08003 * 119.99383 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.00348 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0064 -3.6539 1.2513 13 6 4.2311 -4.2146 1.2990 14 8 4.7048 -4.7270 0.3025 15 6 4.9927 -4.2069 2.5524 16 6 6.2161 -4.7675 2.6002 17 6 6.9812 -4.7602 3.8597 18 6 8.2519 -5.3410 3.9123 19 7 8.9339 -5.3268 5.0422 20 6 8.4134 -4.7734 6.1241 21 6 7.1538 -4.1957 6.0766 22 7 6.4650 -4.1998 4.9524 23 6 1.4959 -4.9637 -0.1244 24 6 0.8992 -5.5262 0.9884 25 6 0.2085 -6.7182 0.8741 26 6 0.1215 -7.3518 -0.3515 27 6 0.7229 -6.7919 -1.4632 28 6 1.4102 -5.5980 -1.3496 29 1 -0.4851 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8897 32 1 2.6288 -3.2450 2.0458 33 1 4.5720 -3.7523 3.4371 34 1 6.6366 -5.2224 1.7156 35 1 8.6757 -5.7969 3.0298 36 1 8.9734 -4.7672 7.0476 37 1 6.7358 -3.7415 6.9628 38 1 0.9696 -5.0327 1.9465 39 1 -0.2610 -7.1557 1.7426 40 1 -0.4158 -8.2844 -0.4404 41 1 0.6552 -7.2872 -2.4206 42 1 1.8797 -5.1604 -2.2182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492223520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:27 Heat of formation + Delta-G solvation = 26.911950 kcal Electronic energy + Delta-G solvation = -25385.149850 eV Core-core repulsion = 21715.398165 eV Total energy + Delta-G solvation = -3669.751684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96653 -41.06599 -39.74001 -36.90529 -35.91971 -34.73285 -34.45351 -32.71277 -31.71862 -31.30397 -30.51910 -27.16200 -26.18985 -25.39776 -23.82114 -23.52887 -23.00769 -21.29592 -20.70147 -18.99851 -18.61615 -18.06668 -17.78511 -17.66712 -16.97157 -16.73285 -16.41728 -16.24304 -15.84416 -15.45984 -15.45576 -14.99943 -14.61033 -14.43317 -14.18697 -14.09866 -13.84908 -13.65994 -13.42387 -13.10853 -12.92939 -12.65699 -12.62153 -12.53085 -12.45735 -12.15731 -11.87891 -11.59985 -11.44087 -11.34937 -11.02814 -10.58322 -10.12518 -10.06058 -9.75946 -9.65575 -9.51788 -8.20831 -6.31157 -0.79039 0.06385 0.50942 0.56059 0.77695 1.39708 1.40953 1.49069 2.26400 2.31976 2.39516 2.82320 2.94456 3.00941 3.13478 3.30867 3.45033 3.70653 3.97915 4.03424 4.09549 4.13476 4.21270 4.26521 4.32540 4.42721 4.49209 4.57681 4.64902 4.75432 4.78837 5.10070 5.12662 5.20099 5.21985 5.28410 5.38573 5.42373 5.59892 5.61223 5.64265 5.77167 5.90307 6.15528 6.20108 6.25454 6.66559 6.74775 6.81273 7.28513 7.37856 8.89752 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.003766 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.450736 B = 7433.509703 C =10131.014285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.039 3.961 10 C 0.199 3.801 11 H 0.061 0.939 12 N -0.689 5.689 13 C 0.537 3.463 14 O -0.586 6.586 15 C -0.158 4.158 16 C -0.034 4.034 17 C 0.080 3.920 18 C 0.069 3.931 19 N -0.460 5.460 20 C 0.058 3.942 21 C 0.055 3.945 22 N -0.455 5.455 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.132 4.132 29 H 0.264 0.736 30 H 0.005 0.995 31 H 0.012 0.988 32 H 0.409 0.591 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.193 0.807 36 H 0.209 0.791 37 H 0.205 0.795 38 H 0.119 0.881 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 -13.308 11.657 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.094 3.906 11 H 0.079 0.921 12 N -0.337 5.337 13 C 0.327 3.673 14 O -0.468 6.468 15 C -0.180 4.180 16 C -0.055 4.055 17 C -0.056 4.056 18 C -0.090 4.090 19 N -0.174 5.174 20 C -0.102 4.102 21 C -0.107 4.107 22 N -0.171 5.171 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.245 0.755 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.210 0.790 36 H 0.225 0.775 37 H 0.222 0.778 38 H 0.137 0.863 39 H 0.163 0.837 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.627 -13.525 10.941 20.385 hybrid contribution -0.107 1.529 0.016 1.533 sum 10.520 -11.996 10.957 19.355 Atomic orbital electron populations 1.70059 1.07449 1.27834 1.51193 1.25766 0.95567 1.02621 0.94718 0.85652 0.78392 0.78968 0.78941 1.20011 1.20738 1.19214 1.21383 0.93008 0.91653 1.50943 0.92850 1.19123 0.93261 0.91052 0.96444 1.19764 0.92233 0.92106 0.86475 0.92122 1.45808 1.16901 1.57145 1.13805 1.18811 0.81511 0.77859 0.89120 1.90733 1.70356 1.47732 1.38014 1.23064 0.96219 1.01932 0.96793 1.22121 0.93085 0.95598 0.94684 1.20955 0.94269 0.97172 0.93182 1.24186 0.90998 0.95804 0.97972 1.68530 1.34812 1.14273 0.99801 1.24578 0.94643 0.92476 0.98545 1.24437 0.92981 0.96432 0.96848 1.68489 1.35580 1.13317 0.99699 1.20429 0.98467 0.96211 0.94806 1.21073 0.98167 0.96756 0.98041 1.21436 0.98864 0.95007 0.98986 1.21476 0.99909 1.00917 0.92368 1.21394 0.97456 0.95118 1.00151 1.21181 1.00416 0.96570 0.96927 0.92676 0.97706 0.96971 0.75486 0.83368 0.83057 0.79004 0.77473 0.77786 0.86250 0.83658 0.83071 0.83751 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -29.14 8.84 25.60 0.23 -28.92 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.96 4.50 29.85 0.13 2.09 16 10 C 0.20 8.60 2.12 44.25 0.09 8.70 16 11 H 0.06 2.91 7.44 -2.39 -0.02 2.89 16 12 N -0.69 -26.10 4.02 -450.11 -1.81 -27.90 16 13 C 0.54 19.73 7.71 86.44 0.67 20.40 16 14 O -0.59 -25.08 15.90 -4.22 -0.07 -25.15 16 15 C -0.16 -4.54 9.56 23.65 0.23 -4.32 16 16 C -0.03 -0.85 9.46 23.85 0.23 -0.62 16 17 C 0.08 1.77 6.70 41.72 0.28 2.05 16 18 C 0.07 1.28 10.98 85.05 0.93 2.21 16 19 N -0.46 -8.32 10.49 -193.90 -2.03 -10.36 16 20 C 0.06 0.74 11.22 84.74 0.95 1.69 16 21 C 0.06 0.79 11.22 84.79 0.95 1.74 16 22 N -0.46 -9.89 9.51 -184.66 -1.76 -11.64 16 23 C -0.10 -3.79 4.92 -19.86 -0.10 -3.89 16 24 C -0.12 -4.14 9.33 22.27 0.21 -3.94 16 25 C -0.13 -3.49 10.05 22.27 0.22 -3.26 16 26 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 27 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 28 C -0.13 -4.75 9.67 22.27 0.22 -4.54 16 29 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 30 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.41 14.25 8.58 -92.70 -0.80 13.46 16 33 H 0.15 3.92 7.43 -2.91 -0.02 3.89 16 34 H 0.15 3.62 7.52 -2.91 -0.02 3.60 16 35 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.21 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.12 3.84 7.71 -2.91 -0.02 3.82 16 39 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -73.75 373.25 3.04 -70.71 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.25 Total: 28.52 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 6.15 Total: -15.90 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -5.31 Total: -103.93 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.07 Total: -25.15 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.75 3.04 -70.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492223520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.626 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds