Wall clock time and date at job start Tue Mar 31 2020 13:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47196 * 270.00464 * 3 2 1 5 5 H 1.48506 * 109.47057 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47316 * 150.00296 * 3 2 1 7 7 C 1.37883 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00147 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99655 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47053 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46768 * 54.99789 * 10 9 7 12 12 N 1.46500 * 109.46990 * 295.00200 * 10 9 7 13 13 C 1.34769 * 120.00078 * 155.00042 * 12 10 9 14 14 O 1.21641 * 120.00253 * 359.97438 * 13 12 10 15 15 C 1.46881 * 120.00111 * 180.02562 * 13 12 10 16 16 C 1.34499 * 120.00010 * 173.81895 * 15 13 12 17 17 C 1.47534 * 120.00191 * 352.09436 * 16 15 13 18 18 C 1.39980 * 120.58445 * 130.94890 * 17 16 15 19 19 C 1.38493 * 118.24662 * 179.97438 * 18 17 16 20 20 N 1.32341 * 119.18806 * 0.02562 * 19 18 17 21 21 C 1.31879 * 121.11184 * 359.97438 * 20 19 18 22 22 N 1.31569 * 121.94448 * 359.74463 * 21 20 19 23 23 C 1.50700 * 109.47275 * 175.00119 * 10 9 7 24 24 C 1.38235 * 119.99621 * 259.99740 * 23 10 9 25 25 C 1.38240 * 119.99628 * 179.97438 * 24 23 10 26 26 C 1.38236 * 119.99974 * 359.96192 * 25 24 23 27 27 C 1.38231 * 119.99882 * 359.97438 * 26 25 24 28 28 C 1.38233 * 119.99861 * 79.97652 * 23 10 9 29 29 H 0.96994 * 120.00144 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47498 * 60.00493 * 9 7 2 31 31 H 1.09001 * 109.47367 * 299.99653 * 9 7 2 32 32 H 0.97008 * 119.99909 * 334.99871 * 12 10 9 33 33 H 1.08000 * 119.99692 * 353.81011 * 15 13 12 34 34 H 1.08000 * 120.00090 * 172.09522 * 16 15 13 35 35 H 1.08000 * 120.87528 * 359.95835 * 18 17 16 36 36 H 1.07999 * 120.40841 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.02675 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00509 * 359.97438 * 24 23 10 39 39 H 1.07996 * 119.99544 * 179.97438 * 25 24 23 40 40 H 1.07994 * 119.99556 * 179.71712 * 26 25 24 41 41 H 1.08004 * 119.99967 * 179.97438 * 27 26 25 42 42 H 1.07992 * 120.00188 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 1 3.5866 -3.1750 -0.8443 12 7 3.6345 -3.2924 1.2492 13 6 3.5077 -4.6333 1.2962 14 8 3.7143 -5.2990 0.2993 15 6 3.1191 -5.2908 2.5508 16 6 2.8715 -6.6126 2.5686 17 6 2.8187 -7.3705 1.3039 18 6 3.5343 -8.5647 1.1588 19 6 3.4496 -9.2370 -0.0491 20 7 2.7021 -8.7323 -1.0176 21 6 2.0396 -7.6044 -0.8496 22 7 2.0841 -6.9326 0.2807 23 6 5.5234 -2.6383 -0.1267 24 6 6.1151 -2.8803 -1.3523 25 6 7.4928 -2.8814 -1.4665 26 6 8.2787 -2.6395 -0.3553 27 6 7.6869 -2.3962 0.8700 28 6 6.3093 -2.3973 0.9848 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8745 -0.6800 -0.8911 32 1 3.4694 -2.7614 2.0442 33 1 3.0323 -4.7128 3.4589 34 1 2.7113 -7.1194 3.5088 35 1 4.1367 -8.9516 1.9674 36 1 3.9870 -10.1617 -0.1989 37 1 1.4400 -7.2228 -1.6628 38 1 5.5012 -3.0687 -2.2206 39 1 7.9550 -3.0709 -2.4240 40 1 9.3550 -2.6449 -0.4436 41 1 8.3008 -2.2076 1.7383 42 1 5.8470 -2.2082 1.9422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492544496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:14 Heat of formation + Delta-G solvation = 69.514312 kcal Electronic energy + Delta-G solvation = -26469.442931 eV Core-core repulsion = 22801.538624 eV Total energy + Delta-G solvation = -3667.904307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73051 -39.63264 -38.47497 -35.53941 -34.33519 -32.72672 -32.55351 -31.52508 -30.72373 -30.49492 -29.29660 -25.69843 -24.56911 -24.05376 -22.47628 -22.08692 -21.77883 -19.86633 -19.47746 -17.73221 -17.21713 -16.99587 -16.41862 -16.05365 -15.38111 -15.23715 -15.03123 -14.71977 -14.33874 -14.11134 -14.07838 -13.82417 -13.40411 -13.20061 -13.09490 -12.88283 -12.64336 -12.40858 -12.34418 -11.78211 -11.35559 -11.11703 -10.84696 -10.75441 -10.71491 -10.60303 -10.17582 -9.87043 -9.75531 -9.47061 -9.31539 -9.10370 -8.82341 -8.65326 -8.60584 -8.43653 -8.31138 -6.10048 -4.09812 0.70826 1.21120 1.65802 1.68471 1.79197 3.25476 3.33859 3.35747 3.65571 3.77528 4.04626 4.13767 4.18946 4.35565 4.38262 4.61208 5.03732 5.07216 5.14538 5.16340 5.17148 5.23731 5.26772 5.36155 5.43153 5.63424 5.71519 5.79385 5.81788 5.98093 6.10555 6.17902 6.23913 6.30534 6.42398 6.58127 6.71585 6.74094 6.80386 6.91816 7.05551 7.20651 7.28389 7.34637 7.65422 8.10900 8.34209 8.45282 8.77509 8.97177 9.50572 11.02717 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.004588 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.937862 B = 6101.673963 C = 7855.109069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.197 3.803 11 H 0.092 0.908 12 N -0.693 5.693 13 C 0.539 3.461 14 O -0.533 6.533 15 C -0.145 4.145 16 C -0.064 4.064 17 C 0.218 3.782 18 C -0.224 4.224 19 C 0.141 3.859 20 N -0.530 5.530 21 C 0.302 3.698 22 N -0.467 5.467 23 C -0.075 4.075 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.109 4.109 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.401 0.599 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.191 0.809 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 -12.714 6.078 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.095 0.905 9 C -0.051 4.051 10 C 0.092 3.908 11 H 0.110 0.890 12 N -0.342 5.342 13 C 0.326 3.674 14 O -0.411 6.411 15 C -0.168 4.168 16 C -0.084 4.084 17 C 0.072 3.928 18 C -0.246 4.246 19 C -0.026 4.026 20 N -0.244 5.244 21 C 0.014 3.986 22 N -0.180 5.180 23 C -0.076 4.076 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.128 4.128 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.235 0.765 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.207 0.793 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.286 -12.680 4.594 17.586 hybrid contribution 0.864 1.071 1.063 1.739 sum 12.150 -11.609 5.657 17.731 Atomic orbital electron populations 1.69905 1.06243 1.26891 1.50497 1.24979 0.94660 0.98897 0.94507 0.86879 0.80325 0.83979 0.78686 1.20236 1.21359 1.19031 1.21020 0.88597 0.94751 1.51367 0.90458 1.19870 0.97905 0.89799 0.97518 1.19924 0.87407 0.96330 0.87119 0.89046 1.45783 1.68325 1.06061 1.13993 1.18341 0.77992 0.82641 0.88456 1.90767 1.50463 1.63905 1.36014 1.23323 0.99868 0.94900 0.98676 1.22016 0.97757 0.93712 0.94942 1.20189 0.90159 0.89914 0.92490 1.22804 1.03273 0.97746 1.00757 1.22987 0.92935 0.98243 0.88386 1.68317 1.08814 1.14296 1.33010 1.24777 0.93185 0.86560 0.94106 1.68607 1.18845 1.30317 1.00220 1.20593 0.97003 0.96667 0.93384 1.21043 0.94637 0.99444 0.97473 1.21064 0.93842 1.00773 0.98371 1.21012 0.99235 1.01733 0.93211 1.21052 0.94840 1.01073 0.97372 1.20925 0.93345 1.00015 0.98480 0.92660 0.95918 0.95382 0.76482 0.84324 0.83449 0.84131 0.82140 0.79269 0.86127 0.86546 0.86773 0.86670 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -13.94 9.39 -34.44 -0.32 -14.26 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 10 C 0.20 3.89 2.12 -69.08 -0.15 3.74 16 11 H 0.09 2.05 7.44 -51.93 -0.39 1.66 16 12 N -0.69 -12.23 4.03 -56.18 -0.23 -12.45 16 13 C 0.54 9.45 7.46 -12.77 -0.10 9.35 16 14 O -0.53 -10.92 12.41 5.24 0.07 -10.86 16 15 C -0.14 -1.90 10.06 -37.41 -0.38 -2.28 16 16 C -0.06 -0.76 9.94 -37.11 -0.37 -1.13 16 17 C 0.22 3.17 4.95 -82.77 -0.41 2.76 16 18 C -0.22 -2.66 9.94 -38.84 -0.39 -3.04 16 19 C 0.14 1.71 11.30 -17.24 -0.19 1.52 16 20 N -0.53 -7.86 10.42 -14.64 -0.15 -8.02 16 21 C 0.30 4.83 12.27 -92.27 -1.13 3.69 16 22 N -0.47 -8.07 7.84 -11.25 -0.09 -8.16 16 23 C -0.08 -1.34 4.91 -104.62 -0.51 -1.85 16 24 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 27 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 28 C -0.11 -1.73 9.32 -39.58 -0.37 -2.10 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 31 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 32 H 0.40 6.35 8.58 -40.82 -0.35 6.00 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.19 2.66 8.06 -52.49 -0.42 2.24 16 38 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.12 1.69 7.72 -52.49 -0.41 1.28 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -34.81 364.69 -10.19 -45.00 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.30 Total: 9.65 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -6.09 Total: -10.82 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.31 Total: -54.68 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.81 -10.19 -45.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492544496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.517 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds