Wall clock time and date at job start Tue Mar 31 2020 13:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47196 * 270.00464 * 3 2 1 5 5 H 1.48506 * 109.47057 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47316 * 150.00296 * 3 2 1 7 7 C 1.37883 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00147 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99655 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47053 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46768 * 54.99789 * 10 9 7 12 12 N 1.46500 * 109.46990 * 295.00200 * 10 9 7 13 13 C 1.34769 * 120.00078 * 155.00042 * 12 10 9 14 14 O 1.21641 * 120.00253 * 359.97438 * 13 12 10 15 15 C 1.46881 * 120.00111 * 180.02562 * 13 12 10 16 16 C 1.34499 * 120.00010 * 173.81895 * 15 13 12 17 17 C 1.47534 * 120.00191 * 352.09436 * 16 15 13 18 18 C 1.39980 * 120.58445 * 130.94890 * 17 16 15 19 19 C 1.38493 * 118.24662 * 179.97438 * 18 17 16 20 20 N 1.32341 * 119.18806 * 0.02562 * 19 18 17 21 21 C 1.31879 * 121.11184 * 359.97438 * 20 19 18 22 22 N 1.31569 * 121.94448 * 359.74463 * 21 20 19 23 23 C 1.50700 * 109.47275 * 175.00119 * 10 9 7 24 24 C 1.38235 * 119.99621 * 259.99740 * 23 10 9 25 25 C 1.38240 * 119.99628 * 179.97438 * 24 23 10 26 26 C 1.38236 * 119.99974 * 359.96192 * 25 24 23 27 27 C 1.38231 * 119.99882 * 359.97438 * 26 25 24 28 28 C 1.38233 * 119.99861 * 79.97652 * 23 10 9 29 29 H 0.96994 * 120.00144 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47498 * 60.00493 * 9 7 2 31 31 H 1.09001 * 109.47367 * 299.99653 * 9 7 2 32 32 H 0.97008 * 119.99909 * 334.99871 * 12 10 9 33 33 H 1.08000 * 119.99692 * 353.81011 * 15 13 12 34 34 H 1.08000 * 120.00090 * 172.09522 * 16 15 13 35 35 H 1.08000 * 120.87528 * 359.95835 * 18 17 16 36 36 H 1.07999 * 120.40841 * 180.02562 * 19 18 17 37 37 H 1.07999 * 119.02675 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00509 * 359.97438 * 24 23 10 39 39 H 1.07996 * 119.99544 * 179.97438 * 25 24 23 40 40 H 1.07994 * 119.99556 * 179.71712 * 26 25 24 41 41 H 1.08004 * 119.99967 * 179.97438 * 27 26 25 42 42 H 1.07992 * 120.00188 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 1 3.5866 -3.1750 -0.8443 12 7 3.6345 -3.2924 1.2492 13 6 3.5077 -4.6333 1.2962 14 8 3.7143 -5.2990 0.2993 15 6 3.1191 -5.2908 2.5508 16 6 2.8715 -6.6126 2.5686 17 6 2.8187 -7.3705 1.3039 18 6 3.5343 -8.5647 1.1588 19 6 3.4496 -9.2370 -0.0491 20 7 2.7021 -8.7323 -1.0176 21 6 2.0396 -7.6044 -0.8496 22 7 2.0841 -6.9326 0.2807 23 6 5.5234 -2.6383 -0.1267 24 6 6.1151 -2.8803 -1.3523 25 6 7.4928 -2.8814 -1.4665 26 6 8.2787 -2.6395 -0.3553 27 6 7.6869 -2.3962 0.8700 28 6 6.3093 -2.3973 0.9848 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8745 -0.6800 -0.8911 32 1 3.4694 -2.7614 2.0442 33 1 3.0323 -4.7128 3.4589 34 1 2.7113 -7.1194 3.5088 35 1 4.1367 -8.9516 1.9674 36 1 3.9870 -10.1617 -0.1989 37 1 1.4400 -7.2228 -1.6628 38 1 5.5012 -3.0687 -2.2206 39 1 7.9550 -3.0709 -2.4240 40 1 9.3550 -2.6449 -0.4436 41 1 8.3008 -2.2076 1.7383 42 1 5.8470 -2.2082 1.9422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492544496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:13 Heat of formation + Delta-G solvation = 48.081696 kcal Electronic energy + Delta-G solvation = -26470.372319 eV Core-core repulsion = 22801.538624 eV Total energy + Delta-G solvation = -3668.833695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81515 -40.94300 -39.69997 -36.96615 -35.51264 -34.66833 -33.71692 -32.83281 -31.83533 -31.63802 -30.98429 -27.17938 -25.84533 -25.14387 -23.64825 -23.53966 -23.14778 -21.30128 -20.70105 -19.06747 -18.85203 -18.25438 -17.73792 -17.29041 -16.61061 -16.37408 -16.29557 -16.09739 -15.82411 -15.41688 -15.35177 -14.96089 -14.64682 -14.56057 -14.36990 -14.21124 -14.15442 -13.81042 -13.52022 -13.41209 -13.05353 -12.55938 -12.43297 -11.97243 -11.90692 -11.76341 -11.74455 -11.72571 -11.42838 -10.85145 -10.79945 -10.70793 -10.21282 -9.93316 -9.87269 -9.78143 -9.55627 -8.27951 -6.32941 -0.32744 0.17826 0.47119 0.52448 0.75797 1.36452 1.37327 1.48531 2.35042 2.36183 2.51201 2.94039 2.97283 3.07637 3.22444 3.33494 3.65672 3.88936 3.99796 4.02731 4.14409 4.17598 4.26412 4.29682 4.37293 4.48725 4.57375 4.64535 4.70738 4.73683 4.76366 5.00286 5.10954 5.12048 5.15496 5.21519 5.28901 5.53519 5.56955 5.58589 5.61361 5.64000 5.87775 6.14930 6.17977 6.26446 6.72986 6.78708 7.25072 7.30865 7.45203 8.88598 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.004588 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.937862 B = 6101.673963 C = 7855.109069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.518 4.518 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.210 3.790 11 H 0.046 0.954 12 N -0.694 5.694 13 C 0.527 3.473 14 O -0.571 6.571 15 C -0.166 4.166 16 C -0.043 4.043 17 C 0.185 3.815 18 C -0.210 4.210 19 C 0.133 3.867 20 N -0.545 5.545 21 C 0.278 3.722 22 N -0.508 5.508 23 C -0.098 4.098 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.266 0.734 30 H 0.039 0.961 31 H 0.024 0.976 32 H 0.408 0.592 33 H 0.177 0.823 34 H 0.201 0.799 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.187 0.813 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.697 -12.997 8.667 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.556 4.556 8 H 0.047 0.953 9 C -0.041 4.041 10 C 0.104 3.896 11 H 0.064 0.936 12 N -0.343 5.343 13 C 0.317 3.683 14 O -0.451 6.451 15 C -0.188 4.188 16 C -0.063 4.063 17 C 0.041 3.959 18 C -0.231 4.231 19 C -0.033 4.033 20 N -0.260 5.260 21 C -0.011 4.011 22 N -0.222 5.222 23 C -0.099 4.099 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.244 0.756 33 H 0.194 0.806 34 H 0.218 0.782 35 H 0.202 0.798 36 H 0.219 0.781 37 H 0.203 0.797 38 H 0.123 0.877 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.116 -12.974 7.209 21.184 hybrid contribution -0.310 0.977 0.204 1.045 sum 14.806 -11.997 7.413 20.447 Atomic orbital electron populations 1.70068 1.08314 1.28051 1.52368 1.25896 0.95436 1.03071 0.94113 0.85742 0.79768 0.78663 0.78947 1.20019 1.20909 1.16427 1.21163 0.90980 0.92895 1.50520 0.95288 1.19716 0.94626 0.91991 0.97755 1.19425 0.89287 0.94034 0.86816 0.93570 1.45740 1.68598 1.06582 1.13360 1.19173 0.77107 0.82280 0.89786 1.90746 1.52025 1.64507 1.37858 1.23422 1.02050 0.95673 0.97670 1.22635 0.94794 0.93156 0.95730 1.20855 0.90629 0.91469 0.92947 1.23264 1.01958 0.96176 1.01691 1.23764 0.92123 0.99376 0.88020 1.68335 1.09473 1.13923 1.34310 1.24790 0.94392 0.87551 0.94324 1.68549 1.20770 1.31475 1.01369 1.20392 0.95385 0.99322 0.94779 1.21139 0.96128 1.01063 0.96961 1.21360 0.92685 1.00002 1.00193 1.21474 1.01016 0.99613 0.92407 1.21464 0.94139 0.99479 0.98843 1.21107 0.94402 1.00052 0.98035 0.92538 0.94303 0.95778 0.75573 0.80620 0.78229 0.79755 0.78098 0.79670 0.87656 0.84238 0.83135 0.83240 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 2 C 0.01 0.69 5.47 84.66 0.46 1.16 16 3 Si 0.95 43.31 27.47 68.60 1.88 45.20 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 7 C -0.52 -29.23 9.39 25.60 0.24 -28.99 16 8 H 0.03 1.87 7.99 -2.92 -0.02 1.85 16 9 C 0.00 -0.15 3.56 29.85 0.11 -0.04 16 10 C 0.21 8.78 2.12 44.25 0.09 8.87 16 11 H 0.05 2.30 7.44 -2.39 -0.02 2.29 16 12 N -0.69 -25.49 4.03 -449.91 -1.81 -27.31 16 13 C 0.53 19.16 7.46 86.51 0.65 19.80 16 14 O -0.57 -24.80 12.41 -4.16 -0.05 -24.85 16 15 C -0.17 -4.17 10.06 23.68 0.24 -3.93 16 16 C -0.04 -0.94 9.94 23.87 0.24 -0.70 16 17 C 0.19 5.27 4.95 41.79 0.21 5.48 16 18 C -0.21 -4.49 9.94 22.75 0.23 -4.27 16 19 C 0.13 3.03 11.30 84.68 0.96 3.98 16 20 N -0.55 -16.60 10.42 -200.22 -2.09 -18.69 16 21 C 0.28 9.59 12.27 180.93 2.22 11.82 16 22 N -0.51 -18.53 7.84 -189.50 -1.49 -20.01 16 23 C -0.10 -3.52 4.91 -19.87 -0.10 -3.62 16 24 C -0.13 -4.64 9.67 22.27 0.22 -4.42 16 25 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 26 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 27 C -0.12 -2.94 10.05 22.27 0.22 -2.71 16 28 C -0.12 -3.52 9.32 22.27 0.21 -3.31 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 31 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 32 H 0.41 13.20 8.58 -92.70 -0.80 12.41 16 33 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.19 6.02 8.06 -2.91 -0.02 5.99 16 38 H 0.11 3.78 8.04 -2.91 -0.02 3.76 16 39 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.13 3.43 7.72 -2.91 -0.02 3.40 16 Total: -1.00 -82.92 364.69 3.57 -79.35 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.19 Total: 31.81 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 6.63 Total: -6.80 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.09 Total: -124.71 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -82.92 3.57 -79.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492544496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.435 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds