Wall clock time and date at job start Tue Mar 31 2020 13:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99903 * 2 1 4 4 H 1.48492 * 109.46929 * 264.89205 * 3 2 1 5 5 H 1.48495 * 109.46846 * 24.89427 * 3 2 1 6 6 H 1.48504 * 109.46703 * 144.89229 * 3 2 1 7 7 C 1.37877 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99686 * 0.44971 * 7 2 1 9 9 C 1.50698 * 120.00361 * 180.45408 * 7 2 1 10 10 C 1.52997 * 115.55296 * 86.34390 * 9 7 2 11 11 N 1.46500 * 109.46822 * 64.88919 * 10 9 7 12 12 C 1.34779 * 119.99947 * 184.29924 * 11 10 9 13 13 O 1.21654 * 119.99809 * 5.13142 * 12 11 10 14 14 C 1.46747 * 120.00227 * 185.12916 * 12 11 10 15 15 C 1.34645 * 120.00155 * 182.05243 * 14 12 11 16 16 C 1.47356 * 120.00001 * 180.02562 * 15 14 12 17 17 C 1.40963 * 119.79020 * 180.02562 * 16 15 14 18 18 N 1.31135 * 120.53135 * 179.72208 * 17 16 15 19 19 C 1.33872 * 119.87593 * 0.25632 * 18 17 16 20 20 C 1.40494 * 120.94977 * 179.97438 * 19 18 17 21 21 C 1.36123 * 119.76762 * 180.02562 * 20 19 18 22 22 C 1.39438 * 121.00195 * 0.02562 * 21 20 19 23 23 C 1.36027 * 120.96235 * 359.97438 * 22 21 20 24 24 C 1.40777 * 119.70557 * 0.02562 * 23 22 21 25 25 N 1.32421 * 119.79232 * 0.25181 * 16 15 14 26 26 C 1.53003 * 117.49841 * 232.01600 * 9 7 2 27 27 C 1.53001 * 117.49695 * 300.67703 * 9 7 2 28 28 H 0.97000 * 120.00229 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47429 * 304.88709 * 10 9 7 30 30 H 1.09000 * 109.47022 * 184.88729 * 10 9 7 31 31 H 0.96995 * 120.00063 * 4.29411 * 11 10 9 32 32 H 1.08001 * 119.99931 * 2.05966 * 14 12 11 33 33 H 1.08001 * 119.99913 * 0.02562 * 15 14 12 34 34 H 1.07995 * 119.73253 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.11791 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.49863 * 180.02562 * 21 20 19 37 37 H 1.08002 * 119.51883 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.14690 * 179.97438 * 23 22 21 39 39 H 1.09000 * 117.50167 * 214.99680 * 26 9 7 40 40 H 1.08997 * 117.49731 * 0.02836 * 26 9 7 41 41 H 1.09006 * 117.49864 * 359.97366 * 27 9 7 42 42 H 1.08996 * 117.50344 * 144.97313 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6045 1.9841 -1.3945 5 1 1.3968 2.6814 0.5893 6 1 3.4886 1.4737 0.8052 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0083 9 6 3.5115 -1.1940 0.0098 10 6 4.1620 -1.1121 1.3922 11 7 3.8385 -2.3194 2.1564 12 6 4.2337 -2.4305 3.4401 13 8 4.7765 -1.4925 3.9927 14 6 4.0092 -3.6829 4.1712 15 6 4.3665 -3.7801 5.4658 16 6 4.1416 -5.0379 6.1998 17 6 4.5168 -5.1345 7.5551 18 7 4.3184 -6.2450 8.2237 19 6 3.7598 -7.2988 7.6156 20 6 3.5374 -8.4996 8.3102 21 6 2.9682 -9.5563 7.6680 22 6 2.6005 -9.4678 6.3259 23 6 2.7997 -8.3224 5.6197 24 6 3.3858 -7.2079 6.2491 25 7 3.5923 -6.0716 5.5808 26 6 4.2253 -2.0246 -1.0587 27 6 4.2259 -0.4965 -1.1495 28 1 -0.4850 0.8400 -0.0004 29 1 3.7849 -0.2361 1.9199 30 1 5.2433 -1.0315 1.2807 31 1 3.3398 -3.0388 1.7385 32 1 3.5575 -4.5267 3.6709 33 1 4.8180 -2.9361 5.9662 34 1 4.9677 -4.2859 8.0479 35 1 3.8170 -8.5841 9.3499 36 1 2.7988 -10.4772 8.2062 37 1 2.1502 -10.3209 5.8401 38 1 2.5103 -8.2685 4.5806 39 1 5.1583 -2.5126 -0.7768 40 1 3.6049 -2.5706 -1.7694 41 1 3.6059 -0.0379 -1.9199 42 1 5.1591 0.0211 -0.9273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493590501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:47 Heat of formation + Delta-G solvation = 52.800978 kcal Electronic energy + Delta-G solvation = -24972.513370 eV Core-core repulsion = 21303.884318 eV Total energy + Delta-G solvation = -3668.629052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.41675 -40.73769 -38.83668 -38.55221 -36.23102 -35.02783 -34.39196 -34.21649 -31.66661 -31.14016 -28.69890 -27.51004 -26.52776 -25.33118 -23.41330 -23.26981 -22.88003 -21.25180 -20.59013 -19.70034 -19.14834 -18.38557 -18.13717 -17.38807 -16.93622 -16.64070 -16.26690 -16.05163 -15.94943 -15.63180 -15.37052 -15.13310 -14.80134 -14.71762 -14.48496 -14.29327 -13.79035 -13.30523 -13.21955 -13.09620 -12.88609 -12.76258 -12.73058 -12.67012 -12.63028 -12.17693 -11.99899 -11.61578 -11.14400 -11.12265 -10.98363 -10.66541 -10.36849 -10.24941 -9.95396 -9.73178 -9.41864 -8.30574 -6.37248 -1.11819 -0.64003 0.39061 0.95720 1.34111 1.39379 1.48738 1.83827 2.21546 2.34944 2.36050 2.79044 2.99380 3.04625 3.07771 3.14235 3.25468 3.57277 3.77332 3.94070 4.02682 4.11193 4.17578 4.23111 4.29926 4.36173 4.41859 4.42030 4.51882 4.80447 4.85860 4.87738 4.89070 5.08226 5.10253 5.13576 5.16850 5.25902 5.31074 5.35904 5.49081 5.55754 5.69199 5.72870 6.16914 6.27481 6.59661 6.65108 6.72706 7.24363 7.33607 8.84194 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.002352 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.819718 B =11900.393403 C =12305.086486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.261 1.261 5 H -0.304 1.304 6 H -0.244 1.244 7 C -0.480 4.480 8 H 0.044 0.956 9 C -0.042 4.042 10 C 0.162 3.838 11 N -0.694 5.694 12 C 0.534 3.466 13 O -0.589 6.589 14 C -0.151 4.151 15 C -0.033 4.033 16 C 0.112 3.888 17 C 0.099 3.901 18 N -0.442 5.442 19 C 0.056 3.944 20 C -0.100 4.100 21 C -0.082 4.082 22 C -0.086 4.086 23 C -0.101 4.101 24 C 0.059 3.941 25 N -0.436 5.436 26 C -0.151 4.151 27 C -0.192 4.192 28 H 0.264 0.736 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.412 0.588 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.211 0.789 35 H 0.153 0.847 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.145 0.855 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.713 -19.677 14.682 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.186 1.186 5 H -0.232 1.232 6 H -0.167 1.167 7 C -0.517 4.517 8 H 0.062 0.938 9 C -0.044 4.044 10 C 0.037 3.963 11 N -0.342 5.342 12 C 0.324 3.676 13 O -0.472 6.472 14 C -0.174 4.174 15 C -0.054 4.054 16 C -0.040 4.040 17 C -0.076 4.076 18 N -0.155 5.155 19 C -0.067 4.067 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.121 4.121 24 C -0.067 4.067 25 N -0.151 5.151 26 C -0.188 4.188 27 C -0.230 4.230 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.248 0.752 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.227 0.773 35 H 0.171 0.829 36 H 0.192 0.808 37 H 0.189 0.811 38 H 0.163 0.837 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.872 -19.151 15.044 26.278 hybrid contribution -0.574 1.049 -0.536 1.310 sum 9.298 -18.102 14.507 24.992 Atomic orbital electron populations 1.70017 1.08135 1.27922 1.52451 1.25743 0.95137 1.02615 0.93916 0.86024 0.79592 0.79134 0.79571 1.18596 1.23156 1.16724 1.20376 0.88657 0.92866 1.49816 0.93803 1.19454 0.92821 1.04567 0.87511 1.20963 0.97403 0.86650 0.91236 1.45766 1.55630 1.21022 1.11742 1.18805 0.78580 0.88371 0.81869 1.90738 1.46178 1.41594 1.68669 1.23100 1.01621 0.96555 0.96133 1.22149 0.95806 0.93897 0.93574 1.21293 0.95997 0.93262 0.93460 1.24551 0.95017 0.97123 0.90939 1.68714 1.10383 0.99671 1.36714 1.20122 0.98689 0.95561 0.92365 1.21105 0.99295 0.90201 1.01329 1.21548 0.94514 0.99435 0.94635 1.21495 0.96799 0.97865 0.94447 1.21153 0.98210 0.91167 1.01527 1.20009 1.00407 0.93947 0.92360 1.68663 1.09785 0.99360 1.37324 1.22882 1.01518 0.92402 1.01990 1.23044 1.01860 0.96324 1.01787 0.92686 0.94286 0.91879 0.75249 0.83540 0.81963 0.77285 0.82894 0.80795 0.81124 0.83680 0.87652 0.89637 0.90328 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 2 C 0.02 1.35 5.47 84.66 0.46 1.81 16 3 Si 0.93 44.40 24.81 68.60 1.70 46.10 16 4 H -0.26 -11.71 7.03 99.48 0.70 -11.01 16 5 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.24 -10.95 5.90 99.48 0.59 -10.36 16 7 C -0.48 -25.60 9.29 25.60 0.24 -25.37 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 9 C -0.04 -1.80 0.84 -52.93 -0.04 -1.84 16 10 C 0.16 6.58 5.22 86.38 0.45 7.03 16 11 N -0.69 -25.55 5.45 -467.05 -2.55 -28.09 16 12 C 0.53 19.08 7.75 86.47 0.67 19.75 16 13 O -0.59 -24.43 16.23 -4.20 -0.07 -24.50 16 14 C -0.15 -4.26 9.56 23.67 0.23 -4.04 16 15 C -0.03 -0.81 9.45 23.85 0.23 -0.59 16 16 C 0.11 2.66 6.71 42.12 0.28 2.94 16 17 C 0.10 2.01 10.95 85.46 0.94 2.94 16 18 N -0.44 -9.95 10.45 -187.00 -1.95 -11.91 16 19 C 0.06 1.23 6.59 40.31 0.27 1.49 16 20 C -0.10 -1.48 9.98 22.33 0.22 -1.26 16 21 C -0.08 -0.75 9.95 22.07 0.22 -0.53 16 22 C -0.09 -0.89 9.95 22.04 0.22 -0.67 16 23 C -0.10 -1.75 9.99 22.38 0.22 -1.53 16 24 C 0.06 1.37 6.59 40.44 0.27 1.64 16 25 N -0.44 -11.40 9.42 -177.65 -1.67 -13.08 16 26 C -0.15 -5.29 9.96 30.62 0.30 -4.98 16 27 C -0.19 -7.30 7.62 30.62 0.23 -7.06 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.04 1.82 6.63 -2.39 -0.02 1.80 16 30 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 31 H 0.41 14.12 8.42 -92.71 -0.78 13.34 16 32 H 0.15 3.89 7.41 -2.91 -0.02 3.87 16 33 H 0.16 3.56 7.52 -2.91 -0.02 3.54 16 34 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.17 0.27 8.06 -2.91 -0.02 0.24 16 37 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.08 3.19 7.17 -2.38 -0.02 3.18 16 42 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -74.41 362.55 1.31 -73.10 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.15 Total: 26.45 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.40 Total: -10.26 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -5.87 Total: -110.89 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.70 Total: 46.10 kcal Total: -74.41 1.31 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493590501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.901 kcal (2) G-P(sol) polarization free energy of solvation -74.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds