Wall clock time and date at job start Tue Mar 31 2020 13:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47024 * 273.09957 * 3 2 1 5 5 H 1.48506 * 109.47101 * 33.09722 * 3 2 1 6 6 H 1.48500 * 109.47166 * 153.09950 * 3 2 1 7 7 C 1.37872 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99655 * 1.73985 * 7 2 1 9 9 C 1.50699 * 120.00389 * 181.74398 * 7 2 1 10 10 C 1.52998 * 115.54925 * 90.87442 * 9 7 2 11 11 N 1.46500 * 109.46959 * 64.03556 * 10 9 7 12 12 C 1.34783 * 120.00020 * 175.20937 * 11 10 9 13 13 O 1.21649 * 119.99678 * 4.94611 * 12 11 10 14 14 C 1.46748 * 120.00009 * 184.94222 * 12 11 10 15 15 C 1.34636 * 119.99968 * 184.63580 * 14 12 11 16 16 C 1.47358 * 120.00283 * 33.28831 * 15 14 12 17 17 C 1.40960 * 119.79053 * 186.66427 * 16 15 14 18 18 N 1.31136 * 120.53584 * 179.97438 * 17 16 15 19 19 C 1.33882 * 119.87052 * 0.02562 * 18 17 16 20 20 C 1.40489 * 120.94276 * 179.97438 * 19 18 17 21 21 C 1.36123 * 119.76552 * 179.97438 * 20 19 18 22 22 C 1.39439 * 120.99771 * 0.04353 * 21 20 19 23 23 C 1.36021 * 120.96759 * 359.95255 * 22 21 20 24 24 C 1.40786 * 119.70863 * 0.02615 * 23 22 21 25 25 N 1.32421 * 119.79135 * 6.39235 * 16 15 14 26 26 C 1.52990 * 117.50128 * 236.55241 * 9 7 2 27 27 C 1.53001 * 117.49459 * 305.21396 * 9 7 2 28 28 H 0.97007 * 119.99509 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47717 * 304.03444 * 10 9 7 30 30 H 1.09002 * 109.47436 * 184.03144 * 10 9 7 31 31 H 0.97002 * 120.00248 * 355.21086 * 11 10 9 32 32 H 1.08007 * 119.99650 * 4.63178 * 14 12 11 33 33 H 1.08006 * 120.00226 * 213.29192 * 15 14 12 34 34 H 1.07999 * 119.73415 * 0.02562 * 17 16 15 35 35 H 1.08000 * 120.12107 * 0.02562 * 20 19 18 36 36 H 1.08002 * 119.50082 * 180.02562 * 21 20 19 37 37 H 1.08010 * 119.51410 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.14722 * 180.02562 * 23 22 21 39 39 H 1.09003 * 117.49941 * 214.99860 * 26 9 7 40 40 H 1.09001 * 117.49879 * 0.02562 * 26 9 7 41 41 H 1.08993 * 117.50120 * 359.96841 * 27 9 7 42 42 H 1.09001 * 117.49591 * 144.97451 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4311 2.0843 -1.3980 5 1 1.4809 2.6329 0.7646 6 1 3.5780 1.4221 0.6334 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1291 -0.0274 9 6 3.5110 -1.1944 0.0403 10 6 4.1342 -1.2360 1.4369 11 7 3.7816 -2.4983 2.0916 12 6 4.3009 -2.7997 3.2983 13 8 4.9902 -1.9864 3.8841 14 6 4.0349 -4.1090 3.9053 15 6 4.4748 -4.3761 5.1494 16 6 4.5396 -3.3007 6.1547 17 6 5.1307 -3.5501 7.4099 18 7 5.1967 -2.6036 8.3151 19 6 4.6990 -1.3897 8.0482 20 6 4.7572 -0.3595 9.0015 21 6 4.2441 0.8659 8.7045 22 6 3.6581 1.1177 7.4645 23 6 3.5830 0.1460 6.5156 24 6 4.1030 -1.1342 6.7853 25 7 4.0471 -2.1046 5.8714 26 6 4.2471 -1.9257 -1.0839 27 6 4.2462 -0.3957 -1.0379 28 1 -0.4850 0.8401 -0.0004 29 1 3.7566 -0.4021 2.0284 30 1 5.2185 -1.1607 1.3534 31 1 3.1742 -3.1171 1.6567 32 1 3.4861 -4.8583 3.3539 33 1 4.7802 -5.3786 5.4106 34 1 5.5333 -4.5283 7.6275 35 1 5.2080 -0.5387 9.9664 36 1 4.2915 1.6549 9.4404 37 1 3.2582 2.0988 7.2544 38 1 3.1266 0.3557 5.5595 39 1 5.1755 -2.4366 -0.8286 40 1 3.6419 -2.4063 -1.8526 41 1 3.6404 0.1296 -1.7762 42 1 5.1738 0.1003 -0.7521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493590502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:51 Heat of formation + Delta-G solvation = 81.029191 kcal Electronic energy + Delta-G solvation = -26301.499638 eV Core-core repulsion = 22634.094654 eV Total energy + Delta-G solvation = -3667.404985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.31236 -40.53886 -38.87809 -38.37076 -35.99440 -34.81990 -34.27096 -34.20080 -31.63246 -31.00137 -28.61914 -27.45780 -26.45885 -25.13858 -23.48566 -23.26790 -22.93700 -21.20185 -20.47499 -19.60053 -19.02405 -18.43362 -18.04209 -17.15121 -16.98078 -16.43343 -16.10984 -16.06052 -15.78828 -15.58125 -15.32477 -14.90822 -14.77415 -14.70838 -14.28528 -14.13176 -13.90341 -13.71557 -13.12193 -13.03236 -12.82128 -12.77726 -12.70689 -12.66263 -12.39560 -12.19433 -11.99461 -11.54794 -11.00839 -10.97511 -10.67638 -10.61594 -10.30238 -10.05343 -9.77330 -9.63946 -9.12894 -8.31884 -6.37581 -1.01753 -0.55571 0.40015 1.05860 1.29512 1.36184 1.47465 1.95986 2.34016 2.48385 2.50841 3.02654 3.04049 3.11278 3.17781 3.26502 3.26746 3.68241 3.85751 4.00556 4.07163 4.11882 4.17918 4.29685 4.34765 4.38206 4.40349 4.52265 4.64995 4.81013 4.82734 4.88572 4.90507 5.06708 5.08556 5.12633 5.21407 5.28277 5.33361 5.41510 5.46568 5.67549 5.71380 5.74548 6.26717 6.33810 6.69984 6.81298 6.87781 7.32776 7.53617 8.82780 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.003840 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.093687 B = 7289.915735 C = 8589.147107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.304 1.304 6 H -0.245 1.245 7 C -0.478 4.478 8 H 0.048 0.952 9 C -0.037 4.037 10 C 0.175 3.825 11 N -0.701 5.701 12 C 0.526 3.474 13 O -0.569 6.569 14 C -0.171 4.171 15 C -0.034 4.034 16 C 0.089 3.911 17 C 0.102 3.898 18 N -0.450 5.450 19 C 0.056 3.944 20 C -0.096 4.096 21 C -0.086 4.086 22 C -0.097 4.097 23 C -0.107 4.107 24 C 0.052 3.948 25 N -0.401 5.401 26 C -0.150 4.150 27 C -0.196 4.196 28 H 0.264 0.736 29 H 0.024 0.976 30 H 0.050 0.950 31 H 0.408 0.592 32 H 0.177 0.823 33 H 0.211 0.789 34 H 0.223 0.777 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -6.906 15.931 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.171 4.171 3 Si 0.757 3.243 4 H -0.193 1.193 5 H -0.231 1.231 6 H -0.168 1.168 7 C -0.515 4.515 8 H 0.066 0.934 9 C -0.038 4.038 10 C 0.050 3.950 11 N -0.351 5.351 12 C 0.315 3.685 13 O -0.450 6.450 14 C -0.195 4.195 15 C -0.054 4.054 16 C -0.063 4.063 17 C -0.074 4.074 18 N -0.163 5.163 19 C -0.067 4.067 20 C -0.115 4.115 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.073 4.073 25 N -0.116 5.116 26 C -0.187 4.187 27 C -0.234 4.234 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.244 0.756 32 H 0.194 0.806 33 H 0.228 0.772 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.194 0.806 37 H 0.177 0.823 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.654 -5.958 16.396 20.979 hybrid contribution -0.649 0.962 -0.886 1.460 sum 11.004 -4.995 15.510 19.663 Atomic orbital electron populations 1.70016 1.07983 1.27807 1.52478 1.25691 0.95103 1.02356 0.93983 0.86026 0.80023 0.79642 0.78632 1.19304 1.23148 1.16831 1.20360 0.88532 0.93007 1.49628 0.93382 1.19456 0.92811 1.03941 0.87580 1.20652 0.96436 0.85541 0.92341 1.45796 1.47716 1.21397 1.20202 1.19177 0.80420 0.88175 0.80710 1.90739 1.41594 1.50565 1.62087 1.23471 1.01136 0.96466 0.98392 1.22718 0.94046 0.98272 0.90363 1.21939 0.96465 0.92139 0.95778 1.24758 0.93350 1.00609 0.88698 1.68678 1.14939 0.99985 1.32729 1.20017 0.98345 0.94147 0.94217 1.21112 0.99921 0.91407 0.99090 1.21455 0.94910 0.97361 0.96811 1.21364 0.97514 0.99747 0.93007 1.20999 0.99622 0.91642 1.00412 1.19959 1.00099 0.95734 0.91542 1.69102 1.13370 0.99992 1.29102 1.22895 1.01450 0.92895 1.01431 1.22996 1.01805 0.95458 1.03134 0.92705 0.95798 0.93195 0.75607 0.80576 0.77249 0.76110 0.82237 0.80569 0.82283 0.87042 0.88019 0.89348 0.90320 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.93 45.10 24.74 68.60 1.70 46.80 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 6 H -0.24 -11.28 5.98 99.48 0.60 -10.69 16 7 C -0.48 -25.61 9.16 25.60 0.23 -25.38 16 8 H 0.05 2.80 8.06 -2.91 -0.02 2.78 16 9 C -0.04 -1.60 0.87 -52.93 -0.05 -1.65 16 10 C 0.18 7.49 5.26 86.38 0.45 7.95 16 11 N -0.70 -26.48 5.46 -467.05 -2.55 -29.03 16 12 C 0.53 19.07 7.10 86.47 0.61 19.68 16 13 O -0.57 -24.84 13.16 -4.19 -0.06 -24.90 16 14 C -0.17 -4.21 9.87 23.67 0.23 -3.97 16 15 C -0.03 -0.68 9.78 23.85 0.23 -0.44 16 16 C 0.09 2.50 6.10 42.12 0.26 2.75 16 17 C 0.10 2.29 10.95 85.46 0.94 3.23 16 18 N -0.45 -12.19 10.45 -187.00 -1.95 -14.15 16 19 C 0.06 1.66 6.59 40.30 0.27 1.93 16 20 C -0.10 -2.14 9.98 22.33 0.22 -1.92 16 21 C -0.09 -1.59 9.95 22.07 0.22 -1.37 16 22 C -0.10 -2.25 9.95 22.04 0.22 -2.03 16 23 C -0.11 -3.53 9.99 22.38 0.22 -3.30 16 24 C 0.05 1.84 6.59 40.45 0.27 2.10 16 25 N -0.40 -14.80 6.45 -177.65 -1.15 -15.94 16 26 C -0.15 -5.42 9.96 30.62 0.30 -5.11 16 27 C -0.20 -7.77 7.19 30.62 0.22 -7.55 16 28 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.02 1.17 7.56 -2.39 -0.02 1.16 16 30 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 31 H 0.41 14.29 8.28 -92.71 -0.77 13.53 16 32 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.22 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.08 3.29 6.66 -2.39 -0.02 3.28 16 42 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -81.35 356.97 1.78 -79.56 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.17 Total: 28.34 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.32 Total: -13.11 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -5.35 Total: -116.69 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.90 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.70 Total: 46.80 kcal Total: -81.35 1.78 -79.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493590502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.593 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds