Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00318 * 2 1 4 4 H 1.48500 * 109.47100 * 269.99979 * 3 2 1 5 5 H 1.48506 * 109.47258 * 30.00045 * 3 2 1 6 6 H 1.48503 * 109.47434 * 149.99978 * 3 2 1 7 7 C 1.37877 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00036 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00232 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.53121 * 109.52185 * 174.99773 * 10 9 7 12 12 C 1.53045 * 109.27863 * 177.62085 * 11 10 9 13 13 N 1.46847 * 109.52465 * 300.82064 * 12 11 10 14 14 C 1.46899 * 111.00378 * 185.83623 * 13 12 11 15 15 C 1.52999 * 109.46680 * 75.80275 * 14 13 12 16 16 O 1.42903 * 109.46858 * 65.02419 * 15 14 13 17 17 C 1.35931 * 116.99871 * 179.97438 * 16 15 14 18 18 C 1.38715 * 120.04165 * 359.72024 * 17 16 15 19 19 C 1.38142 * 119.95850 * 179.79354 * 18 17 16 20 20 C 1.38370 * 120.04095 * 0.46427 * 19 18 17 21 21 Cl 1.73593 * 119.95878 * 179.77088 * 20 19 18 22 22 C 1.38374 * 120.08287 * 359.79134 * 20 19 18 23 23 C 1.38144 * 120.04279 * 359.97438 * 22 20 19 24 24 C 1.46853 * 111.19469 * 61.74215 * 13 12 11 25 25 C 1.53042 * 109.52366 * 298.25594 * 24 13 12 26 26 H 0.97002 * 119.99499 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47311 * 59.99896 * 9 7 2 28 28 H 1.09005 * 109.46813 * 299.99891 * 9 7 2 29 29 H 1.09000 * 109.52495 * 54.87138 * 10 9 7 30 30 H 1.08998 * 109.50526 * 57.68371 * 11 10 9 31 31 H 1.08991 * 109.50456 * 297.55858 * 11 10 9 32 32 H 1.08996 * 109.46385 * 180.80372 * 12 11 10 33 33 H 1.08997 * 109.45508 * 60.82983 * 12 11 10 34 34 H 1.09001 * 109.46872 * 315.81016 * 14 13 12 35 35 H 1.08996 * 109.47112 * 195.80594 * 14 13 12 36 36 H 1.08993 * 109.47692 * 305.02573 * 15 14 13 37 37 H 1.08997 * 109.47273 * 185.02174 * 15 14 13 38 38 H 1.08006 * 120.02642 * 0.02731 * 18 17 16 39 39 H 1.08001 * 119.98241 * 180.23741 * 19 18 17 40 40 H 1.07998 * 119.97879 * 179.97438 * 22 20 19 41 41 H 1.07993 * 120.01889 * 179.97438 * 23 22 20 42 42 H 1.08994 * 109.46219 * 58.27452 * 24 13 12 43 43 H 1.09007 * 109.45757 * 178.24758 * 24 13 12 44 44 H 1.09002 * 109.50447 * 299.24058 * 25 24 13 45 45 H 1.09001 * 109.50221 * 179.12215 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5475 -2.6399 -0.1253 12 6 6.0564 -4.0820 -0.0652 13 7 5.6505 -4.6930 1.2069 14 6 6.2383 -6.0305 1.3599 15 6 7.7182 -5.8984 1.7252 16 8 7.8386 -5.2838 3.0097 17 6 9.0970 -5.0921 3.4866 18 6 10.1926 -5.4927 2.7360 19 6 11.4708 -5.2931 3.2203 20 6 11.6584 -4.7028 4.4576 21 17 13.2655 -4.4585 5.0668 22 6 10.5666 -4.3073 5.2102 23 6 9.2870 -4.5008 4.7270 24 6 4.1879 -4.7440 1.3287 25 6 3.6233 -3.3216 1.3102 26 1 -0.4849 0.8401 0.0004 27 1 3.8746 -0.6810 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.5858 -3.1769 -0.8406 30 1 5.9811 -2.0666 0.6940 31 1 5.8355 -2.1918 -1.0762 32 1 7.1438 -4.0868 -0.1397 33 1 5.6331 -4.6511 -0.8928 34 1 6.1431 -6.5786 0.4225 35 1 5.7155 -6.5689 2.1503 36 1 8.2230 -5.2840 0.9799 37 1 8.1757 -6.8873 1.7513 38 1 10.0465 -5.9569 1.7717 39 1 12.3242 -5.6014 2.6345 40 1 10.7150 -3.8471 6.1758 41 1 8.4351 -4.1924 5.3148 42 1 3.7736 -5.3101 0.4945 43 1 3.9183 -5.2295 2.2666 44 1 4.0266 -2.7590 2.1522 45 1 2.5365 -3.3605 1.3849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516178986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -48.802222 kcal Electronic energy + Delta-G solvation = -24433.124491 eV Core-core repulsion = 20861.197088 eV Total energy + Delta-G solvation = -3571.927403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.14887 -40.06025 -38.60895 -37.14795 -36.21243 -34.37876 -32.27214 -31.77600 -31.60809 -30.34862 -28.88397 -25.83069 -24.23897 -23.96161 -23.41190 -22.55180 -21.66937 -20.48423 -19.30378 -18.85266 -17.52735 -17.39598 -17.00155 -16.36713 -16.14867 -15.77832 -15.64796 -15.23779 -15.16958 -14.78517 -14.57119 -14.50446 -14.21619 -14.18670 -14.03511 -13.45249 -13.26706 -13.10761 -12.99075 -12.86287 -12.55400 -12.39112 -12.29926 -12.08212 -12.03392 -11.85107 -11.68028 -11.58956 -11.45562 -11.22714 -10.94492 -10.77334 -10.70605 -10.10330 -9.18207 -9.06448 -8.26700 -6.28453 0.24026 0.26349 1.22320 1.34527 1.36948 1.48894 2.28772 2.37215 2.64481 2.94228 3.08746 3.74124 3.84913 3.92545 3.99408 4.02818 4.13769 4.16507 4.23714 4.35576 4.40725 4.43745 4.48268 4.56700 4.61944 4.66696 4.78016 4.79494 4.88599 4.95339 4.96299 5.01641 5.06816 5.12825 5.23800 5.25319 5.29198 5.34396 5.42327 5.52195 5.61336 5.72429 5.75314 6.17387 6.23351 6.34051 6.50483 6.78616 7.35208 8.89894 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.002285 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.627480 B =12251.537112 C =13215.147331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.250 1.250 7 C -0.517 4.517 8 H 0.035 0.965 9 C -0.006 4.006 10 C -0.070 4.070 11 C -0.108 4.108 12 C 0.062 3.938 13 N -0.544 5.544 14 C 0.053 3.947 15 C 0.064 3.936 16 O -0.312 6.312 17 C 0.129 3.871 18 C -0.201 4.201 19 C -0.071 4.071 20 C -0.090 4.090 21 Cl -0.076 7.076 22 C -0.073 4.073 23 C -0.157 4.157 24 C 0.069 3.931 25 C -0.097 4.097 26 H 0.264 0.736 27 H 0.012 0.988 28 H 0.014 0.986 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.032 0.968 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.581 -15.387 6.180 31.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.054 0.946 9 C -0.043 4.043 10 C -0.089 4.089 11 C -0.146 4.146 12 C -0.065 4.065 13 N -0.269 5.269 14 C -0.075 4.075 15 C -0.011 4.011 16 O -0.225 6.225 17 C 0.082 3.918 18 C -0.220 4.220 19 C -0.090 4.090 20 C -0.117 4.117 21 Cl -0.047 7.047 22 C -0.091 4.091 23 C -0.175 4.175 24 C -0.058 4.058 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 26.561 -14.932 6.689 31.196 hybrid contribution -0.639 0.514 -0.707 1.082 sum 25.922 -14.418 5.982 30.259 Atomic orbital electron populations 1.70072 1.08160 1.27885 1.53314 1.25992 0.95588 1.03360 0.94604 0.85707 0.79455 0.78698 0.79078 1.19214 1.21170 1.17404 1.21462 0.91948 0.92898 1.49174 0.94648 1.19571 0.94000 0.94905 0.95869 1.20965 0.95068 0.95922 0.96947 1.21622 0.94475 0.96859 1.01633 1.22110 1.00567 0.94443 0.89405 1.61856 1.09065 1.21417 1.34591 1.22229 0.93583 0.89758 1.01902 1.23076 0.97492 0.98028 0.82545 1.86220 1.24096 1.76250 1.35980 1.19366 0.84492 0.94405 0.93495 1.21436 0.91425 1.06674 1.02452 1.21077 0.97947 0.96240 0.93713 1.20927 0.86097 1.07562 0.97114 1.98358 1.22762 1.95856 1.87744 1.21030 0.90002 0.97817 1.00257 1.20583 0.97830 1.03757 0.95369 1.21997 0.86983 0.96179 1.00689 1.21420 0.99164 0.95481 0.97418 0.92713 0.96940 0.96778 0.93511 0.92375 0.91157 0.89320 0.94512 0.90454 0.89635 0.91166 0.89160 0.82642 0.83043 0.83131 0.84179 0.94982 0.90282 0.93008 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.00 0.04 5.47 84.65 0.46 0.50 16 3 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 7 C -0.52 -29.99 9.00 25.60 0.23 -29.75 16 8 H 0.04 2.25 7.32 -2.91 -0.02 2.23 16 9 C -0.01 -0.29 3.52 29.85 0.11 -0.19 16 10 C -0.07 -2.74 2.20 -10.72 -0.02 -2.76 16 11 C -0.11 -3.30 5.38 30.65 0.16 -3.14 16 12 C 0.06 1.48 5.29 86.33 0.46 1.94 16 13 N -0.54 -13.36 4.53 -896.34 -4.06 -17.42 16 14 C 0.05 0.90 5.39 86.30 0.47 1.37 16 15 C 0.06 0.94 4.93 71.98 0.36 1.29 16 16 O -0.31 -6.58 10.08 -92.77 -0.94 -7.52 16 17 C 0.13 2.48 6.69 22.50 0.15 2.63 16 18 C -0.20 -3.02 9.04 22.36 0.20 -2.82 16 19 C -0.07 -1.04 9.82 22.28 0.22 -0.82 16 20 C -0.09 -1.49 6.32 22.33 0.14 -1.35 16 21 Cl -0.08 -1.19 28.95 -2.72 -0.08 -1.26 16 22 C -0.07 -1.21 9.82 22.28 0.22 -0.99 16 23 C -0.16 -2.95 9.99 22.36 0.22 -2.73 16 24 C 0.07 1.97 5.43 86.33 0.47 2.44 16 25 C -0.10 -3.63 5.15 30.65 0.16 -3.47 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 28 H 0.01 0.65 7.57 -2.38 -0.02 0.63 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 1.71 6.65 -2.39 -0.02 1.69 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.03 8.00 -2.39 -0.02 1.01 16 35 H 0.09 1.45 7.79 -2.39 -0.02 1.43 16 36 H 0.07 0.95 6.23 -2.39 -0.01 0.94 16 37 H 0.09 0.85 7.65 -2.39 -0.02 0.84 16 38 H 0.16 1.58 6.30 -2.91 -0.02 1.56 16 39 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 2.07 7.93 -2.38 -0.02 2.05 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.96 7.06 -2.39 -0.02 1.94 16 Total: -1.00 -68.84 370.22 2.01 -66.83 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.91 Total: 10.26 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 4.00 Total: -37.85 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.76 Total: -77.75 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.94 Total: -7.52 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -68.84 2.01 -66.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516178986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.027 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds