Wall clock time and date at job start Tue Mar 31 2020 14:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86803 * 119.99418 * 2 1 4 4 H 1.48498 * 109.47236 * 274.98545 * 3 2 1 5 5 H 1.48508 * 109.47196 * 34.98612 * 3 2 1 6 6 H 1.48496 * 109.47205 * 154.98435 * 3 2 1 7 7 C 1.39900 * 120.00880 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00341 * 162.75229 * 7 2 1 9 9 C 1.41141 * 119.99698 * 342.76023 * 7 2 1 10 10 C 1.40880 * 120.16374 * 155.00879 * 9 7 2 11 11 C 1.36361 * 119.83383 * 180.02562 * 10 9 7 12 12 C 1.39510 * 120.16404 * 0.02562 * 11 10 9 13 13 N 1.39128 * 119.83501 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99677 * 33.67050 * 13 12 11 15 15 O 1.21601 * 120.00428 * 4.74532 * 14 13 12 16 16 C 1.47504 * 119.99904 * 184.74587 * 14 13 12 17 17 C 1.40369 * 120.47776 * 180.23068 * 16 14 13 18 18 C 1.36852 * 118.48688 * 180.26489 * 17 16 14 19 19 C 1.39399 * 119.38297 * 359.75092 * 18 17 16 20 20 N 1.38459 * 119.53368 * 180.02562 * 19 18 17 21 21 C 1.46498 * 120.00393 * 355.59085 * 20 19 18 22 22 C 1.52996 * 117.50185 * 229.37352 * 21 20 19 23 23 C 1.52994 * 117.49902 * 160.71476 * 21 20 19 24 24 N 1.32606 * 120.93106 * 359.97438 * 19 18 17 25 25 C 1.31671 * 121.63344 * 0.02562 * 24 19 18 26 26 C 1.39517 * 120.32827 * 0.23624 * 12 11 10 27 27 C 1.36359 * 120.16521 * 359.48071 * 26 12 11 28 28 H 0.96991 * 120.00943 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.07981 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.91769 * 180.02562 * 11 10 9 31 31 H 0.96997 * 119.99983 * 213.66452 * 13 12 11 32 32 H 1.07998 * 120.75878 * 0.02562 * 17 16 14 33 33 H 1.08000 * 120.30475 * 179.73199 * 18 17 16 34 34 H 0.97010 * 119.99648 * 175.59922 * 20 19 18 35 35 H 1.08998 * 115.54424 * 15.05010 * 21 20 19 36 36 H 1.08999 * 117.50235 * 0.02562 * 22 21 20 37 37 H 1.09001 * 117.49816 * 145.02367 * 22 21 20 38 38 H 1.09004 * 117.50047 * 214.98502 * 23 21 20 39 39 H 1.09004 * 117.49981 * 359.97438 * 23 21 20 40 40 H 1.08000 * 119.74091 * 179.97438 * 25 24 19 41 41 H 1.07996 * 119.91415 * 179.72059 * 26 12 11 42 42 H 1.07999 * 120.08566 * 180.24117 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4965 2.6201 0.8028 6 1 3.5888 1.4123 0.5920 7 6 2.0084 -1.2115 -0.0005 8 1 3.0520 -1.2323 -0.2779 9 6 1.3504 -2.4065 0.3612 10 6 1.8229 -3.6462 -0.1127 11 6 1.1817 -4.7966 0.2406 12 6 0.0601 -4.7480 1.0687 13 7 -0.5892 -5.9260 1.4244 14 6 0.1182 -7.0605 1.5943 15 8 1.3318 -7.0369 1.5218 16 6 -0.5797 -8.3307 1.8683 17 6 0.1474 -9.5173 2.0517 18 6 -0.5418 -10.6737 2.2983 19 6 -1.9337 -10.6393 2.3649 20 7 -2.6341 -11.8073 2.6148 21 6 -1.9205 -13.0831 2.7110 22 6 -2.4620 -14.2587 1.8953 23 6 -2.6322 -14.2392 3.4164 24 7 -2.5965 -9.5036 2.1934 25 6 -1.9724 -8.3692 1.9542 26 6 -0.4170 -3.5237 1.5375 27 6 0.2173 -2.3655 1.1973 28 1 -0.4851 0.8399 0.0004 29 1 2.6904 -3.6852 -0.7549 30 1 1.5431 -5.7477 -0.1216 31 1 -1.5510 -5.9307 1.5502 32 1 1.2260 -9.5185 1.9957 33 1 -0.0121 -11.6042 2.4397 34 1 -3.5974 -11.7807 2.7260 35 1 -0.8397 -13.0092 2.8310 36 1 -3.3491 -14.0830 1.2867 37 1 -1.7375 -14.9586 1.4791 38 1 -2.0196 -14.9262 4.0002 39 1 -3.6313 -14.0504 3.8093 40 1 -2.5427 -7.4621 1.8190 41 1 -1.2885 -3.4935 2.1746 42 1 -0.1509 -1.4188 1.5641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516696111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:03 Heat of formation + Delta-G solvation = 42.526794 kcal Electronic energy + Delta-G solvation = -24831.567182 eV Core-core repulsion = 21162.492609 eV Total energy + Delta-G solvation = -3669.074574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79535 -40.70652 -39.08120 -38.51912 -36.21815 -35.01868 -34.56470 -33.48387 -31.55426 -31.25055 -30.03754 -26.90580 -25.40471 -24.56122 -23.38384 -23.23796 -22.65127 -22.35721 -21.15227 -19.42669 -19.19905 -18.68905 -18.15004 -17.50262 -16.97268 -16.41289 -16.26747 -16.13171 -15.71789 -15.47699 -15.33644 -14.84466 -14.76835 -14.50039 -14.12571 -14.05120 -13.94762 -13.63819 -13.35924 -13.20450 -12.85260 -12.76341 -12.67498 -12.40531 -12.36317 -11.89156 -11.54502 -11.43056 -11.24985 -11.05590 -10.99718 -10.73529 -10.58688 -10.40982 -9.46775 -8.91371 -8.69741 -8.60558 -6.25321 -0.21176 0.29187 0.86757 1.15516 1.40406 1.47400 1.55660 1.90737 1.97896 2.23079 2.33568 2.71943 2.84736 3.05949 3.44381 3.73278 3.74182 3.81596 3.89063 3.95324 4.01796 4.03994 4.20582 4.40816 4.50088 4.61832 4.69815 4.80224 4.93021 4.93536 5.04921 5.10310 5.15688 5.21561 5.22914 5.33759 5.37272 5.44874 5.67237 5.90113 5.92899 6.04015 6.11126 6.37409 6.40248 6.65377 6.72920 6.93745 6.98341 6.99693 7.37943 8.33820 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.051035 B = 0.001930 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.512660 B =14502.795351 C =14872.275066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.233 4.233 11 C -0.087 4.087 12 C 0.008 3.992 13 N -0.639 5.639 14 C 0.555 3.445 15 O -0.578 6.578 16 C -0.260 4.260 17 C 0.015 3.985 18 C -0.237 4.237 19 C 0.419 3.581 20 N -0.680 5.680 21 C 0.063 3.937 22 C -0.192 4.192 23 C -0.174 4.174 24 N -0.562 5.562 25 C 0.194 3.806 26 C -0.110 4.110 27 C -0.171 4.171 28 H 0.290 0.710 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.413 0.587 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.411 0.589 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.179 0.821 41 H 0.125 0.875 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 -23.984 6.475 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.254 4.254 11 C -0.107 4.107 12 C -0.086 4.086 13 N -0.284 5.284 14 C 0.345 3.655 15 O -0.459 6.459 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.261 4.261 19 C 0.182 3.818 20 N -0.308 5.308 21 C -0.043 4.043 22 C -0.231 4.231 23 C -0.212 4.212 24 N -0.280 5.280 25 C 0.034 3.966 26 C -0.130 4.130 27 C -0.191 4.191 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.251 0.749 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.248 0.752 35 H 0.162 0.838 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.195 0.805 41 H 0.143 0.857 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.790 -24.044 6.473 26.406 hybrid contribution 0.469 0.984 -0.247 1.118 sum -8.321 -23.060 6.225 25.293 Atomic orbital electron populations 1.69860 1.08820 1.30682 1.35310 1.26731 0.95570 1.04354 0.91180 0.85193 0.79133 0.75994 0.79385 1.18740 1.18693 1.18581 1.19772 0.98106 0.92483 1.42147 0.90882 1.18004 0.92294 0.92757 0.89762 1.20785 1.04247 0.92979 1.07347 1.20382 0.96202 0.97072 0.97033 1.17191 1.00036 0.85364 1.05962 1.42759 1.10958 1.06967 1.67688 1.18443 0.86690 0.84053 0.76286 1.90735 1.15366 1.86612 1.53137 1.20459 0.95636 0.94005 1.16731 1.21271 1.01168 0.90343 0.88266 1.21342 0.92742 1.00514 1.11514 1.18728 0.89017 0.86645 0.87435 1.43910 1.09811 1.02563 1.74484 1.21930 0.97355 0.78455 1.06583 1.23567 1.04205 1.00834 0.94510 1.23476 1.02795 0.99682 0.95290 1.67276 1.40208 0.98400 1.22089 1.22869 0.90035 0.95572 0.88087 1.20494 1.00748 0.91217 1.00588 1.20910 0.99431 0.97124 1.01645 0.89929 0.88751 0.87986 0.74876 0.83982 0.81656 0.75225 0.83848 0.88828 0.86708 0.86200 0.88114 0.80453 0.85715 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.56 10.94 21.82 0.24 -42.33 16 2 C 0.04 1.87 5.14 85.24 0.44 2.31 16 3 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.50 -27.50 9.04 23.39 0.21 -27.29 16 8 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 9 C 0.07 4.18 5.57 -21.27 -0.12 4.06 16 10 C -0.23 -12.53 9.74 22.48 0.22 -12.32 16 11 C -0.09 -4.36 8.57 22.14 0.19 -4.17 16 12 C 0.01 0.36 6.29 38.60 0.24 0.60 16 13 N -0.64 -22.70 5.25 -305.99 -1.61 -24.31 16 14 C 0.55 20.16 7.50 86.69 0.65 20.81 16 15 O -0.58 -25.80 14.05 -4.03 -0.06 -25.86 16 16 C -0.26 -7.23 5.89 -19.99 -0.12 -7.35 16 17 C 0.02 0.38 9.65 22.46 0.22 0.59 16 18 C -0.24 -4.42 9.28 22.22 0.21 -4.21 16 19 C 0.42 8.18 7.63 133.25 1.02 9.19 16 20 N -0.68 -9.16 5.73 -324.65 -1.86 -11.02 16 21 C 0.06 0.54 6.26 44.99 0.28 0.82 16 22 C -0.19 -1.28 10.46 30.61 0.32 -0.96 16 23 C -0.17 -0.95 10.45 30.61 0.32 -0.63 16 24 N -0.56 -12.73 10.39 -192.30 -2.00 -14.73 16 25 C 0.19 4.53 10.71 85.04 0.91 5.44 16 26 C -0.11 -5.07 9.89 22.14 0.22 -4.85 16 27 C -0.17 -9.05 8.63 22.48 0.19 -8.85 16 28 H 0.29 13.46 8.30 -92.72 -0.77 12.69 16 29 H 0.09 4.88 8.06 -2.91 -0.02 4.85 16 30 H 0.10 5.07 6.39 -2.91 -0.02 5.05 16 31 H 0.41 11.15 6.87 -92.71 -0.64 10.51 16 32 H 0.14 3.49 7.73 -2.91 -0.02 3.47 16 33 H 0.17 1.99 5.85 -2.91 -0.02 1.98 16 34 H 0.41 4.97 8.93 -92.70 -0.83 4.15 16 35 H 0.14 0.95 5.89 -2.39 -0.01 0.94 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.18 3.26 6.42 -2.91 -0.02 3.24 16 41 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.11 6.03 6.16 -2.91 -0.02 6.02 16 Total: -1.00 -70.32 357.12 1.78 -68.54 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.37 Total: 35.99 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 5.40 Total: -26.80 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -5.22 Total: -92.39 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -70.32 1.78 -68.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516696111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.070 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds