Wall clock time and date at job start Tue Mar 31 2020 14:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47225 * 270.00731 * 3 2 1 5 5 H 1.48510 * 109.46765 * 30.00383 * 3 2 1 6 6 H 1.48494 * 109.47293 * 150.00085 * 3 2 1 7 7 C 1.38805 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00621 * 159.26621 * 7 2 1 9 9 N 1.36939 * 120.00078 * 339.26477 * 7 2 1 10 10 C 1.46502 * 119.99805 * 321.60077 * 9 7 2 11 11 C 1.53000 * 109.47440 * 269.99957 * 10 9 7 12 12 C 1.52992 * 109.47174 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47023 * 179.97438 * 12 11 10 14 14 C 1.35902 * 117.00365 * 179.97438 * 13 12 11 15 15 C 1.38760 * 120.04411 * 359.72470 * 14 13 12 16 16 C 1.38136 * 119.96711 * 179.74545 * 15 14 13 17 17 C 1.38264 * 120.06686 * 0.55330 * 16 15 14 18 18 C 1.38369 * 120.09932 * 359.69977 * 17 16 15 19 19 Cl 1.73596 * 119.98555 * 180.02562 * 18 17 16 20 20 C 1.38274 * 120.02707 * 0.02562 * 18 17 16 21 21 C 1.46503 * 120.00238 * 141.59725 * 9 7 2 22 22 C 1.54259 * 110.02801 * 62.55244 * 21 9 7 23 23 C 1.54963 * 104.16087 * 217.13294 * 22 21 9 24 24 C 1.54893 * 102.77488 * 37.88814 * 23 22 21 25 25 C 1.53872 * 110.03021 * 305.33456 * 21 9 7 26 26 H 0.97001 * 119.99903 * 355.03526 * 1 2 3 27 27 H 1.09001 * 109.47422 * 149.99259 * 10 9 7 28 28 H 1.09010 * 109.47051 * 29.99945 * 10 9 7 29 29 H 1.09004 * 109.46597 * 300.00238 * 11 10 9 30 30 H 1.09002 * 109.46863 * 59.99300 * 11 10 9 31 31 H 1.09000 * 109.47262 * 299.99403 * 12 11 10 32 32 H 1.08996 * 109.47374 * 60.00168 * 12 11 10 33 33 H 1.08006 * 120.01691 * 0.02650 * 15 14 13 34 34 H 1.08005 * 119.96300 * 180.25552 * 16 15 14 35 35 H 1.08000 * 119.94871 * 179.71974 * 17 16 15 36 36 H 1.08000 * 120.03330 * 180.02562 * 20 18 17 37 37 H 1.09003 * 110.01344 * 183.94596 * 21 9 7 38 38 H 1.08997 * 110.49062 * 335.78494 * 22 21 9 39 39 H 1.09002 * 110.48518 * 98.42848 * 22 21 9 40 40 H 1.09002 * 110.72214 * 279.58149 * 23 22 21 41 41 H 1.08993 * 110.92775 * 156.29517 * 23 22 21 42 42 H 1.08996 * 110.49069 * 203.40653 * 24 23 22 43 43 H 1.09006 * 110.59474 * 80.81772 * 24 23 22 44 44 H 1.09004 * 110.02873 * 238.56703 * 25 21 9 45 45 H 1.08994 * 110.03555 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0377 -1.2323 -0.3317 9 7 1.3921 -2.3498 0.4188 10 6 0.4698 -2.3114 1.5565 11 6 1.2461 -2.5607 2.8511 12 6 0.2831 -2.5199 4.0392 13 8 1.0081 -2.7534 5.2483 14 6 0.2957 -2.7495 6.4056 15 6 -1.0725 -2.5199 6.3783 16 6 -1.7960 -2.5215 7.5550 17 6 -1.1564 -2.7404 8.7611 18 6 0.2086 -2.9645 8.7921 19 17 1.0085 -3.2397 10.3080 20 6 0.9358 -2.9694 7.6160 21 6 1.6529 -3.6161 -0.2702 22 6 3.1424 -3.9939 -0.1352 23 6 3.4981 -4.6284 -1.5035 24 6 2.6997 -3.7557 -2.5036 25 6 1.3712 -3.4649 -1.7753 26 1 -0.4850 0.8369 0.0727 27 1 -0.2904 -3.0829 1.4343 28 1 -0.0094 -1.3334 1.6028 29 1 1.7254 -3.5387 2.8047 30 1 2.0063 -1.7891 2.9732 31 1 -0.1957 -1.5418 4.0854 32 1 -0.4773 -3.2913 3.9172 33 1 -1.5723 -2.3444 5.4370 34 1 -2.8616 -2.3468 7.5333 35 1 -1.7232 -2.7367 9.6804 36 1 2.0012 -3.1447 7.6400 37 1 1.0281 -4.4046 0.1492 38 1 3.7472 -3.1045 0.0414 39 1 3.2813 -4.7166 0.6688 40 1 3.1661 -5.6658 -1.5456 41 1 4.5681 -4.5586 -1.6987 42 1 2.5162 -4.3047 -3.4272 43 1 3.2316 -2.8273 -2.7120 44 1 0.6104 -4.1808 -2.0865 45 1 1.0400 -2.4496 -1.9931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523438914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:58 Heat of formation + Delta-G solvation = -18.930161 kcal Electronic energy + Delta-G solvation = -24671.035271 eV Core-core repulsion = 21100.403217 eV Total energy + Delta-G solvation = -3570.632053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.14748 -37.93592 -37.63500 -36.42046 -34.76192 -32.21479 -31.07834 -30.55630 -29.63660 -27.83126 -26.69738 -25.60548 -23.39977 -22.74762 -21.74120 -20.49095 -19.90167 -19.04953 -18.34442 -16.48128 -16.07298 -16.01666 -15.90751 -15.31288 -15.08070 -14.78308 -14.27691 -13.94860 -13.75541 -13.63562 -13.15612 -12.99497 -12.67858 -12.50770 -12.12768 -11.96809 -11.62615 -11.53256 -11.23967 -11.11836 -11.00815 -10.81341 -10.69338 -10.54376 -10.46265 -10.40808 -10.26419 -10.20351 -10.12142 -9.67937 -9.62233 -9.49748 -9.00966 -8.47755 -8.31226 -6.60475 -5.79109 -3.42524 0.98355 1.22961 1.87435 3.31373 3.37352 3.42266 3.45811 3.50764 4.46331 4.62162 4.90504 4.93651 5.11924 5.19343 5.27402 5.29820 5.36021 5.42264 5.46329 5.53208 5.63820 5.71439 5.92555 6.00818 6.14537 6.15401 6.22136 6.23991 6.24527 6.30218 6.32547 6.43208 6.52507 6.56794 6.61312 6.66094 6.67467 6.86248 7.02207 7.07073 7.18372 7.38897 7.46591 7.58630 7.81686 8.50321 9.16992 9.79037 10.37391 11.17017 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.002680 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.478610 B =10445.162380 C =11377.801899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.013 3.987 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.061 0.939 9 N -0.575 5.575 10 C 0.152 3.848 11 C -0.133 4.133 12 C 0.062 3.938 13 O -0.310 6.310 14 C 0.154 3.846 15 C -0.206 4.206 16 C -0.067 4.067 17 C -0.159 4.159 18 C 0.004 3.996 19 Cl -0.070 7.070 20 C -0.153 4.153 21 C 0.170 3.830 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.131 4.131 26 H 0.253 0.747 27 H 0.024 0.976 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.040 0.960 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -7.379 12.144 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.187 4.187 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.078 0.922 9 N -0.294 5.294 10 C 0.025 3.975 11 C -0.174 4.174 12 C -0.013 4.013 13 O -0.223 6.223 14 C 0.107 3.893 15 C -0.225 4.225 16 C -0.085 4.085 17 C -0.178 4.178 18 C -0.023 4.023 19 Cl -0.041 7.041 20 C -0.173 4.173 21 C 0.063 3.937 22 C -0.175 4.175 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.170 4.170 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.875 -7.283 12.142 14.283 hybrid contribution 0.295 0.920 0.149 0.978 sum -1.580 -6.363 12.291 13.930 Atomic orbital electron populations 1.70059 1.05454 1.25982 1.51347 1.25132 0.94910 0.98580 1.00094 0.86538 0.79714 0.84111 0.77836 1.21281 1.21575 1.20346 1.18888 0.93636 0.85387 1.39745 0.92179 1.43863 1.51943 1.03504 1.30066 1.20775 0.90780 1.02440 0.83540 1.22379 0.99301 1.02230 0.93450 1.23096 0.96063 1.00429 0.81735 1.86158 1.37576 1.85413 1.13184 1.18898 0.90166 0.93526 0.86708 1.21504 0.93461 1.07304 1.00249 1.20901 0.99960 0.96504 0.91120 1.20891 0.92437 1.05399 0.99054 1.20537 0.92759 1.02532 0.86474 1.98367 1.80278 1.94708 1.30767 1.20223 1.01084 1.07266 0.88678 1.21067 0.92894 0.88408 0.91343 1.22860 0.99781 0.99787 0.95068 1.22440 0.98713 0.98334 0.96612 1.22254 0.97397 0.98978 0.96911 1.22532 0.95361 1.02544 0.96542 0.93719 0.95707 0.88777 0.92690 0.91106 0.91865 0.92418 0.84479 0.84867 0.85073 0.84242 0.93524 0.90824 0.93540 0.92730 0.92946 0.93461 0.92004 0.94153 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 11.48 55.49 0.64 -23.32 16 2 C 0.01 0.33 4.96 -17.44 -0.09 0.25 16 3 Si 0.89 20.81 29.60 -169.99 -5.03 15.78 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.24 7.75 -15.06 -0.12 -6.36 16 8 H 0.06 1.55 6.94 -52.49 -0.36 1.19 16 9 N -0.57 -13.15 2.38 -164.39 -0.39 -13.54 16 10 C 0.15 3.23 5.28 -4.04 -0.02 3.21 16 11 C -0.13 -2.48 5.91 -26.74 -0.16 -2.64 16 12 C 0.06 0.97 4.74 37.15 0.18 1.15 16 13 O -0.31 -4.98 10.14 -19.43 -0.20 -5.17 16 14 C 0.15 2.17 6.69 -39.22 -0.26 1.91 16 15 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 16 C -0.07 -0.69 10.04 -39.61 -0.40 -1.08 16 17 C -0.16 -1.65 9.83 -39.52 -0.39 -2.04 16 18 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 19 Cl -0.07 -0.73 28.95 -51.86 -1.50 -2.24 16 20 C -0.15 -1.99 9.77 -39.40 -0.38 -2.37 16 21 C 0.17 3.41 3.42 -66.82 -0.23 3.18 16 22 C -0.14 -2.45 6.43 -25.04 -0.16 -2.61 16 23 C -0.12 -1.93 6.91 -24.70 -0.17 -2.11 16 24 C -0.12 -1.99 6.83 -25.07 -0.17 -2.17 16 25 C -0.13 -2.56 6.24 -25.61 -0.16 -2.72 16 26 H 0.25 6.67 8.32 -40.82 -0.34 6.33 16 27 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 28 H 0.09 2.27 5.55 -51.92 -0.29 1.98 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.06 0.98 7.65 -51.93 -0.40 0.58 16 32 H 0.06 0.81 7.67 -51.93 -0.40 0.42 16 33 H 0.14 1.56 6.30 -52.48 -0.33 1.23 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 38 H 0.07 1.48 6.64 -51.93 -0.34 1.14 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.01 7.17 -51.93 -0.37 1.64 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -26.56 375.29 -11.06 -37.62 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.10 Total: 2.70 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -3.14 Total: -17.48 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.25 Total: -36.86 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.20 Total: -5.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.56 -11.06 -37.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523438914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.690 kcal (2) G-P(sol) polarization free energy of solvation -26.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds