Wall clock time and date at job start Tue Mar 31 2020 14:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47225 * 270.00731 * 3 2 1 5 5 H 1.48510 * 109.46765 * 30.00383 * 3 2 1 6 6 H 1.48494 * 109.47293 * 150.00085 * 3 2 1 7 7 C 1.38805 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00621 * 159.26621 * 7 2 1 9 9 N 1.36939 * 120.00078 * 339.26477 * 7 2 1 10 10 C 1.46502 * 119.99805 * 321.60077 * 9 7 2 11 11 C 1.53000 * 109.47440 * 269.99957 * 10 9 7 12 12 C 1.52992 * 109.47174 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47023 * 179.97438 * 12 11 10 14 14 C 1.35902 * 117.00365 * 179.97438 * 13 12 11 15 15 C 1.38760 * 120.04411 * 359.72470 * 14 13 12 16 16 C 1.38136 * 119.96711 * 179.74545 * 15 14 13 17 17 C 1.38264 * 120.06686 * 0.55330 * 16 15 14 18 18 C 1.38369 * 120.09932 * 359.69977 * 17 16 15 19 19 Cl 1.73596 * 119.98555 * 180.02562 * 18 17 16 20 20 C 1.38274 * 120.02707 * 0.02562 * 18 17 16 21 21 C 1.46503 * 120.00238 * 141.59725 * 9 7 2 22 22 C 1.54259 * 110.02801 * 62.55244 * 21 9 7 23 23 C 1.54963 * 104.16087 * 217.13294 * 22 21 9 24 24 C 1.54893 * 102.77488 * 37.88814 * 23 22 21 25 25 C 1.53872 * 110.03021 * 305.33456 * 21 9 7 26 26 H 0.97001 * 119.99903 * 355.03526 * 1 2 3 27 27 H 1.09001 * 109.47422 * 149.99259 * 10 9 7 28 28 H 1.09010 * 109.47051 * 29.99945 * 10 9 7 29 29 H 1.09004 * 109.46597 * 300.00238 * 11 10 9 30 30 H 1.09002 * 109.46863 * 59.99300 * 11 10 9 31 31 H 1.09000 * 109.47262 * 299.99403 * 12 11 10 32 32 H 1.08996 * 109.47374 * 60.00168 * 12 11 10 33 33 H 1.08006 * 120.01691 * 0.02650 * 15 14 13 34 34 H 1.08005 * 119.96300 * 180.25552 * 16 15 14 35 35 H 1.08000 * 119.94871 * 179.71974 * 17 16 15 36 36 H 1.08000 * 120.03330 * 180.02562 * 20 18 17 37 37 H 1.09003 * 110.01344 * 183.94596 * 21 9 7 38 38 H 1.08997 * 110.49062 * 335.78494 * 22 21 9 39 39 H 1.09002 * 110.48518 * 98.42848 * 22 21 9 40 40 H 1.09002 * 110.72214 * 279.58149 * 23 22 21 41 41 H 1.08993 * 110.92775 * 156.29517 * 23 22 21 42 42 H 1.08996 * 110.49069 * 203.40653 * 24 23 22 43 43 H 1.09006 * 110.59474 * 80.81772 * 24 23 22 44 44 H 1.09004 * 110.02873 * 238.56703 * 25 21 9 45 45 H 1.08994 * 110.03555 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0377 -1.2323 -0.3317 9 7 1.3921 -2.3498 0.4188 10 6 0.4698 -2.3114 1.5565 11 6 1.2461 -2.5607 2.8511 12 6 0.2831 -2.5199 4.0392 13 8 1.0081 -2.7534 5.2483 14 6 0.2957 -2.7495 6.4056 15 6 -1.0725 -2.5199 6.3783 16 6 -1.7960 -2.5215 7.5550 17 6 -1.1564 -2.7404 8.7611 18 6 0.2086 -2.9645 8.7921 19 17 1.0085 -3.2397 10.3080 20 6 0.9358 -2.9694 7.6160 21 6 1.6529 -3.6161 -0.2702 22 6 3.1424 -3.9939 -0.1352 23 6 3.4981 -4.6284 -1.5035 24 6 2.6997 -3.7557 -2.5036 25 6 1.3712 -3.4649 -1.7753 26 1 -0.4850 0.8369 0.0727 27 1 -0.2904 -3.0829 1.4343 28 1 -0.0094 -1.3334 1.6028 29 1 1.7254 -3.5387 2.8047 30 1 2.0063 -1.7891 2.9732 31 1 -0.1957 -1.5418 4.0854 32 1 -0.4773 -3.2913 3.9172 33 1 -1.5723 -2.3444 5.4370 34 1 -2.8616 -2.3468 7.5333 35 1 -1.7232 -2.7367 9.6804 36 1 2.0012 -3.1447 7.6400 37 1 1.0281 -4.4046 0.1492 38 1 3.7472 -3.1045 0.0414 39 1 3.2813 -4.7166 0.6688 40 1 3.1661 -5.6658 -1.5456 41 1 4.5681 -4.5586 -1.6987 42 1 2.5162 -4.3047 -3.4272 43 1 3.2316 -2.8273 -2.7120 44 1 0.6104 -4.1808 -2.0865 45 1 1.0400 -2.4496 -1.9931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523438914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:57 Heat of formation + Delta-G solvation = -29.108535 kcal Electronic energy + Delta-G solvation = -24671.476638 eV Core-core repulsion = 21100.403217 eV Total energy + Delta-G solvation = -3571.073421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17734 -39.41378 -38.75351 -37.31881 -36.37471 -33.88108 -32.43993 -31.76357 -30.68642 -29.30345 -28.25405 -27.26353 -24.80953 -23.77918 -22.95390 -21.98295 -21.28812 -20.72309 -19.40384 -18.12827 -17.34152 -17.14844 -16.99019 -16.87077 -16.44336 -16.02262 -15.96642 -15.15888 -14.99295 -14.68166 -14.57746 -14.36041 -14.09604 -13.94073 -13.64112 -13.16341 -12.87473 -12.82600 -12.65525 -12.63636 -12.37445 -12.20517 -12.17133 -12.00094 -11.87834 -11.77284 -11.75268 -11.70545 -11.63242 -11.28482 -11.21606 -11.13544 -10.43349 -9.91084 -9.29829 -8.50334 -7.73879 -5.40762 0.07553 0.31041 0.98987 1.43349 1.48167 1.55534 2.20883 2.54320 2.59553 3.28897 3.62718 3.75687 4.00247 4.01543 4.03080 4.05180 4.07997 4.12941 4.25942 4.35601 4.41148 4.50261 4.66022 4.71530 4.73642 4.78969 4.87784 4.96356 5.00112 5.00722 5.05114 5.12476 5.23032 5.25249 5.25388 5.33331 5.35733 5.43615 5.57462 5.60839 5.64185 5.70425 5.76033 5.87821 6.36020 6.54405 7.24405 7.93992 8.45621 9.17275 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.002680 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.478610 B =10445.162380 C =11377.801899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.031 4.031 3 Si 0.938 3.062 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.050 0.950 9 N -0.590 5.590 10 C 0.154 3.846 11 C -0.117 4.117 12 C 0.073 3.927 13 O -0.330 6.330 14 C 0.126 3.874 15 C -0.213 4.213 16 C -0.061 4.061 17 C -0.151 4.151 18 C -0.004 4.004 19 Cl -0.061 7.061 20 C -0.165 4.165 21 C 0.160 3.840 22 C -0.130 4.130 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.128 4.128 26 H 0.248 0.752 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -8.900 13.161 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.228 4.228 3 Si 0.767 3.233 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.068 0.932 9 N -0.309 5.309 10 C 0.028 3.972 11 C -0.157 4.157 12 C -0.002 4.002 13 O -0.244 6.244 14 C 0.080 3.920 15 C -0.232 4.232 16 C -0.079 4.079 17 C -0.170 4.170 18 C -0.030 4.030 19 Cl -0.032 7.032 20 C -0.185 4.185 21 C 0.054 3.946 22 C -0.170 4.170 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.270 -8.821 13.172 16.014 hybrid contribution 0.394 1.325 -0.078 1.385 sum -1.875 -7.495 13.094 15.204 Atomic orbital electron populations 1.70156 1.06304 1.26020 1.53130 1.25634 0.95485 1.00708 1.00982 0.85760 0.78643 0.81457 0.77449 1.21392 1.21838 1.20272 1.18935 0.93193 0.86493 1.38413 0.93249 1.44062 1.51918 1.03888 1.31035 1.20665 0.90969 1.01188 0.84421 1.22031 0.98742 1.01242 0.93682 1.22832 0.95236 1.01069 0.81075 1.86076 1.38335 1.86249 1.13743 1.19114 0.91105 0.95603 0.86133 1.21688 0.92824 1.07173 1.01468 1.21283 1.01439 0.95005 0.90186 1.21268 0.91971 1.03545 1.00226 1.20675 0.93422 1.02534 0.86407 1.98369 1.80292 1.94640 1.29923 1.20307 1.01257 1.07874 0.89045 1.21303 0.94474 0.87387 0.91426 1.22748 0.97675 0.99230 0.97325 1.22405 0.99550 0.98966 0.94022 1.22219 0.95794 0.98961 0.98180 1.22444 0.97281 1.00207 0.96775 0.94218 0.94714 0.91574 0.92357 0.93808 0.92081 0.90489 0.83969 0.81642 0.82468 0.84546 0.92446 0.93496 0.92133 0.90300 0.91345 0.90870 0.93725 0.92613 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.92 11.48 21.65 0.25 -50.67 16 2 C -0.03 -1.65 4.96 84.86 0.42 -1.23 16 3 Si 0.94 43.96 29.60 68.60 2.03 45.99 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.24 -12.49 7.75 84.03 0.65 -11.84 16 8 H 0.05 2.65 6.94 -2.91 -0.02 2.63 16 9 N -0.59 -27.53 2.38 -674.01 -1.60 -29.13 16 10 C 0.15 6.71 5.28 86.38 0.46 7.17 16 11 C -0.12 -4.43 5.91 30.59 0.18 -4.24 16 12 C 0.07 2.30 4.74 71.98 0.34 2.64 16 13 O -0.33 -10.68 10.14 -92.45 -0.94 -11.62 16 14 C 0.13 3.52 6.69 22.50 0.15 3.67 16 15 C -0.21 -4.92 9.04 22.37 0.20 -4.72 16 16 C -0.06 -1.09 10.04 22.25 0.22 -0.87 16 17 C -0.15 -2.73 9.83 22.31 0.22 -2.51 16 18 C 0.00 -0.08 6.32 22.31 0.14 0.06 16 19 Cl -0.06 -1.19 28.95 -2.72 -0.08 -1.27 16 20 C -0.17 -4.23 9.77 22.39 0.22 -4.02 16 21 C 0.16 6.36 3.42 45.71 0.16 6.52 16 22 C -0.13 -4.57 6.43 31.69 0.20 -4.37 16 23 C -0.11 -3.21 6.91 31.91 0.22 -2.99 16 24 C -0.11 -3.68 6.83 31.67 0.22 -3.47 16 25 C -0.13 -4.96 6.24 31.32 0.20 -4.76 16 26 H 0.25 13.55 8.32 -92.71 -0.77 12.78 16 27 H 0.03 1.41 7.90 -2.39 -0.02 1.39 16 28 H 0.07 3.31 5.55 -2.38 -0.01 3.29 16 29 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.93 7.65 -2.39 -0.02 1.91 16 32 H 0.08 2.11 7.67 -2.39 -0.02 2.09 16 33 H 0.14 3.06 6.30 -2.91 -0.02 3.05 16 34 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.06 2.13 7.81 -2.39 -0.02 2.11 16 38 H 0.05 1.89 6.64 -2.39 -0.02 1.87 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 43 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.96 7.17 -2.39 -0.02 1.94 16 Total: -1.00 -58.98 375.29 4.82 -54.16 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.96 Total: 17.50 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.20 Total: -24.95 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.36 Total: -79.80 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.94 Total: -11.62 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -58.98 4.82 -54.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523438914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.051 kcal (2) G-P(sol) polarization free energy of solvation -58.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds