Wall clock time and date at job start Tue Mar 31 2020 15:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31816 * 119.13352 * 2 1 4 4 C 1.32215 * 120.57984 * 180.27919 * 3 2 1 5 5 C 1.38945 * 119.23374 * 359.90333 * 4 3 2 6 6 C 1.37772 * 118.63621 * 359.58193 * 5 4 3 7 7 N 1.31573 * 119.13191 * 179.97438 * 2 1 3 8 8 C 1.50399 * 122.89562 * 181.46872 * 6 5 4 9 9 C 1.53348 * 110.71241 * 339.83757 * 8 6 5 10 10 N 1.47216 * 107.81505 * 47.43162 * 9 8 6 11 11 C 1.34770 * 121.29876 * 115.93623 * 10 9 8 12 12 O 1.21589 * 120.00008 * 3.58214 * 11 10 9 13 13 C 1.47647 * 120.00228 * 183.57347 * 11 10 9 14 14 C 1.40011 * 119.89504 * 142.32262 * 13 11 10 15 15 C 1.36313 * 120.10474 * 180.02562 * 14 13 11 16 16 C 1.40891 * 119.89640 * 359.97375 * 15 14 13 17 17 C 1.41104 * 120.10698 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99673 * 152.61741 * 17 16 15 19 19 C 1.40226 * 120.00314 * 332.62587 * 17 16 15 20 20 N 1.30641 * 120.00430 * 162.45122 * 19 17 16 21 21 Si 1.86802 * 119.99618 * 342.44969 * 19 17 16 22 22 H 1.48495 * 109.47191 * 92.42900 * 21 19 17 23 23 H 1.48503 * 109.47017 * 212.42855 * 21 19 17 24 24 H 1.48499 * 109.47084 * 332.43053 * 21 19 17 25 25 C 1.40891 * 119.79054 * 0.02562 * 16 15 14 26 26 C 1.36319 * 119.88911 * 359.97438 * 25 16 15 27 27 C 1.46796 * 117.40466 * 295.66506 * 10 9 8 28 28 H 1.09005 * 109.46950 * 90.00056 * 1 2 3 29 29 H 1.08998 * 109.47339 * 210.00485 * 1 2 3 30 30 H 1.09000 * 109.47061 * 330.00285 * 1 2 3 31 31 H 1.08007 * 120.38424 * 179.88096 * 4 3 2 32 32 H 1.09004 * 109.22305 * 100.27542 * 8 6 5 33 33 H 1.09000 * 109.22950 * 219.62604 * 8 6 5 34 34 H 1.09000 * 109.85727 * 287.87098 * 9 8 6 35 35 H 1.09007 * 109.87429 * 166.99927 * 9 8 6 36 36 H 1.07993 * 119.94671 * 0.04182 * 14 13 11 37 37 H 1.07997 * 120.05518 * 180.25383 * 15 14 13 38 38 H 0.96995 * 120.00499 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.05606 * 180.02562 * 25 16 15 40 40 H 1.08007 * 119.94278 * 179.97438 * 26 25 16 41 41 H 1.08993 * 109.47090 * 164.57992 * 27 10 9 42 42 H 1.09005 * 109.46565 * 284.57307 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1487 1.1514 0.0000 4 6 3.4705 1.1848 -0.0055 5 6 4.1794 -0.0102 -0.0094 6 6 3.4764 -1.1950 0.0016 7 7 2.1475 -1.1493 0.0005 8 6 4.1456 -2.5416 0.0311 9 6 5.5984 -2.4359 -0.4484 10 7 6.2211 -1.2986 0.2488 11 6 7.2482 -1.4781 1.1027 12 8 7.7208 -2.5872 1.2606 13 6 7.7998 -0.3280 1.8463 14 6 8.2184 -0.4904 3.1725 15 6 8.7278 0.5687 3.8632 16 6 8.8332 1.8280 3.2404 17 6 9.3593 2.9275 3.9514 18 1 9.8482 3.7304 3.4197 19 6 9.2476 2.9775 5.3483 20 7 10.0083 3.7869 6.0360 21 14 8.0110 1.8866 6.2260 22 1 8.6672 0.6153 6.6240 23 1 7.5074 2.5838 7.4365 24 1 6.8754 1.5934 5.3151 25 6 8.4107 1.9865 1.9057 26 6 7.9026 0.9215 1.2231 27 6 5.6837 0.0393 -0.0270 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.9931 2.1300 -0.0075 32 1 4.1292 -2.9283 1.0501 33 1 3.6031 -3.2264 -0.6207 34 1 5.6216 -2.2654 -1.5247 35 1 6.1355 -3.3536 -0.2085 36 1 8.1378 -1.4562 3.6488 37 1 9.0542 0.4416 4.8848 38 1 9.9307 3.8218 7.0022 39 1 8.4899 2.9498 1.4240 40 1 7.5780 1.0421 0.2000 41 1 6.0332 0.7355 0.7354 42 1 6.0246 0.3728 -1.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534652134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:06 Heat of formation + Delta-G solvation = 23.629797 kcal Electronic energy + Delta-G solvation = -26533.452939 eV Core-core repulsion = 22863.558930 eV Total energy + Delta-G solvation = -3669.894009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48929 -41.07797 -39.22652 -37.77629 -35.79372 -35.28644 -34.06647 -33.04441 -31.99406 -31.52014 -30.24992 -27.85164 -26.35876 -25.79352 -24.30468 -23.63203 -23.01779 -22.00789 -20.38303 -19.60838 -19.06809 -17.89346 -17.72219 -17.30868 -16.87790 -16.67727 -16.27116 -16.05262 -15.70128 -15.26649 -15.06526 -14.90250 -14.65080 -14.38036 -14.23846 -14.18529 -14.11038 -13.71660 -13.57687 -13.28308 -13.17035 -13.07474 -12.78453 -12.72848 -12.42627 -12.24859 -12.02474 -11.96683 -11.57485 -11.50372 -11.09208 -10.74217 -10.29950 -10.19902 -9.83664 -9.61546 -9.52430 -9.05801 -6.62006 -0.18455 -0.00929 0.33271 0.86410 1.22304 1.33014 1.43161 1.80230 1.96283 2.04084 2.56861 2.61612 2.87625 3.11065 3.38744 3.43377 3.54058 3.67002 3.91413 4.06304 4.15857 4.16727 4.25343 4.28145 4.42171 4.48911 4.60101 4.66110 4.66658 4.70334 4.75933 4.83983 4.89171 4.93668 4.94580 5.05661 5.14788 5.40916 5.44654 5.47627 5.62291 5.74751 5.84694 5.93895 6.09657 6.26164 6.35886 6.60082 6.71382 7.04589 7.21178 7.99822 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003772 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.062244 B = 7421.381591 C = 8415.293930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.297 3.703 3 N -0.535 5.535 4 C 0.160 3.840 5 C -0.209 4.209 6 C 0.176 3.824 7 N -0.537 5.537 8 C -0.080 4.080 9 C 0.114 3.886 10 N -0.613 5.613 11 C 0.583 3.417 12 O -0.589 6.589 13 C -0.279 4.279 14 C -0.027 4.027 15 C -0.268 4.268 16 C 0.092 3.908 17 C -0.457 4.457 18 H 0.074 0.926 19 C 0.054 3.946 20 N -0.822 5.822 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.253 1.253 25 C -0.220 4.220 26 C -0.041 4.041 27 C 0.144 3.856 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.200 0.800 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.300 0.700 39 H 0.124 0.876 40 H 0.151 0.849 41 H 0.118 0.882 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 -5.762 -12.477 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 N -0.250 5.250 4 C -0.007 4.007 5 C -0.214 4.214 6 C 0.033 3.967 7 N -0.253 5.253 8 C -0.118 4.118 9 C -0.008 4.008 10 N -0.345 5.345 11 C 0.376 3.624 12 O -0.472 6.472 13 C -0.283 4.283 14 C -0.046 4.046 15 C -0.287 4.287 16 C 0.089 3.911 17 C -0.485 4.485 18 H 0.092 0.908 19 C -0.165 4.165 20 N -0.446 5.446 21 Si 0.787 3.213 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.177 1.177 25 C -0.239 4.239 26 C -0.059 4.059 27 C 0.021 3.979 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.216 0.784 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.168 0.832 41 H 0.135 0.865 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.059 -6.184 -12.167 21.076 hybrid contribution 0.988 -0.108 0.989 1.402 sum -15.071 -6.293 -11.178 19.791 Atomic orbital electron populations 1.20652 0.83580 1.04757 1.04909 1.23874 0.99685 0.83290 0.90118 1.68399 1.10294 1.30618 1.15680 1.23686 0.89439 0.99026 0.88556 1.21529 0.98956 0.95374 1.05556 1.21449 0.89290 0.96178 0.89823 1.68296 1.09575 1.31137 1.16250 1.20830 0.95086 0.91907 1.04025 1.21822 0.90945 0.90573 0.97457 1.47938 1.33425 1.08740 1.44422 1.18386 0.78540 0.87982 0.77469 1.90667 1.61856 1.27663 1.66974 1.19164 1.18119 0.94623 0.96365 1.20452 0.93532 0.97017 0.93593 1.20793 1.13096 0.94043 1.00733 1.18028 0.87768 0.91596 0.93709 1.19741 1.31360 1.05428 0.91979 0.90799 1.26870 0.95949 0.95420 0.98227 1.69601 1.31936 1.32665 1.10385 0.85552 0.80001 0.77994 0.77745 1.19021 1.20157 1.17676 1.20962 1.08047 0.99335 0.95572 1.21022 0.95165 0.90387 0.99339 1.21119 0.86996 0.85134 1.04631 0.88161 0.89126 0.88926 0.78375 0.89994 0.86165 0.88137 0.88552 0.87953 0.88337 0.88908 0.85797 0.83164 0.86453 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.32 71.24 0.74 -0.49 16 2 C 0.30 6.86 7.64 138.81 1.06 7.93 16 3 N -0.54 -12.77 10.35 -187.78 -1.94 -14.72 16 4 C 0.16 3.40 10.94 84.80 0.93 4.33 16 5 C -0.21 -4.66 5.82 -19.86 -0.12 -4.77 16 6 C 0.18 4.18 6.65 42.18 0.28 4.46 16 7 N -0.54 -13.26 10.21 -176.66 -1.80 -15.06 16 8 C -0.08 -1.63 6.15 29.87 0.18 -1.44 16 9 C 0.11 2.41 6.47 86.36 0.56 2.96 16 10 N -0.61 -16.33 2.93 -826.84 -2.42 -18.75 16 11 C 0.58 20.87 7.40 86.73 0.64 21.51 16 12 O -0.59 -24.75 16.35 -3.99 -0.07 -24.81 16 13 C -0.28 -10.76 5.40 -19.93 -0.11 -10.87 16 14 C -0.03 -1.16 9.55 22.25 0.21 -0.95 16 15 C -0.27 -12.40 7.11 22.47 0.16 -12.24 16 16 C 0.09 4.33 5.18 -21.28 -0.11 4.22 16 17 C -0.46 -23.38 9.58 23.46 0.22 -23.15 16 18 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 19 C 0.05 2.71 5.43 85.35 0.46 3.17 16 20 N -0.82 -41.72 13.92 21.87 0.30 -41.41 16 21 Si 0.96 40.94 24.44 68.60 1.68 42.62 16 22 H -0.26 -11.02 6.55 99.48 0.65 -10.37 16 23 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.25 -11.02 6.88 99.48 0.68 -10.34 16 25 C -0.22 -8.69 9.73 22.47 0.22 -8.47 16 26 C -0.04 -1.39 7.31 22.25 0.16 -1.23 16 27 C 0.14 3.07 4.62 85.52 0.40 3.47 16 28 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 2.26 7.06 -2.38 -0.02 2.24 16 36 H 0.10 4.32 8.03 -2.91 -0.02 4.30 16 37 H 0.10 4.62 4.27 -2.91 -0.01 4.61 16 38 H 0.30 13.63 8.29 -92.71 -0.77 12.87 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.15 3.73 5.69 -2.91 -0.02 3.72 16 41 H 0.12 2.81 4.45 -2.39 -0.01 2.80 16 42 H 0.12 1.76 7.94 -2.38 -0.02 1.74 16 Total: -1.00 -64.75 342.79 2.62 -62.13 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.99 Total: 21.59 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 5.89 Total: -11.58 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -5.87 Total: -89.94 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.68 Total: 42.62 kcal Total: -64.75 2.62 -62.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534652134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.760 kcal (2) G-P(sol) polarization free energy of solvation -64.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds