Wall clock time and date at job start Tue Mar 31 2020 14:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99831 * 2 1 4 4 H 1.48507 * 109.47108 * 270.00005 * 3 2 1 5 5 H 1.48500 * 109.47121 * 30.00058 * 3 2 1 6 6 H 1.48501 * 109.46780 * 150.00395 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00475 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99821 * 179.97438 * 7 2 1 10 10 C 1.53124 * 109.52566 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.28012 * 177.55932 * 10 9 7 12 12 N 1.46846 * 109.52260 * 300.82015 * 11 10 9 13 13 C 1.39094 * 110.99982 * 185.84118 * 12 11 10 14 14 C 1.40872 * 119.58941 * 179.97438 * 13 12 11 15 15 C 1.35910 * 120.09640 * 180.02562 * 14 13 12 16 16 C 1.40796 * 119.13649 * 359.97438 * 15 14 13 17 17 N 1.32362 * 133.77920 * 179.97438 * 16 15 14 18 18 N 1.28753 * 109.23720 * 180.02562 * 17 16 15 19 19 C 1.31037 * 110.16230 * 0.02562 * 18 17 16 20 20 C 1.50701 * 126.15561 * 179.97438 * 19 18 17 21 21 F 1.39899 * 109.47192 * 29.96996 * 20 19 18 22 22 F 1.39901 * 109.46972 * 149.97375 * 20 19 18 23 23 N 1.34983 * 107.68523 * 359.97438 * 19 18 17 24 24 N 1.31247 * 119.58872 * 359.73074 * 13 12 11 25 25 C 1.46846 * 111.19997 * 61.74591 * 12 11 10 26 26 C 1.53040 * 109.51964 * 298.25655 * 25 12 11 27 27 H 0.97005 * 120.00585 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.57949 * 59.84106 * 9 7 2 29 29 H 1.08999 * 109.49853 * 57.61556 * 10 9 7 30 30 H 1.08996 * 109.49839 * 297.50587 * 10 9 7 31 31 H 1.09001 * 109.46314 * 180.80749 * 11 10 9 32 32 H 1.08997 * 109.46418 * 60.83870 * 11 10 9 33 33 H 1.08007 * 119.95366 * 0.02562 * 14 13 12 34 34 H 1.08004 * 120.43368 * 179.97438 * 15 14 13 35 35 H 1.09000 * 109.46684 * 269.97378 * 20 19 18 36 36 H 1.08996 * 109.46231 * 58.27402 * 25 12 11 37 37 H 1.09004 * 109.46418 * 178.24241 * 25 12 11 38 38 H 1.09004 * 109.50602 * 299.23671 * 26 25 12 39 39 H 1.08998 * 109.50366 * 179.12192 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1940 0.0000 10 6 4.0232 -2.6372 0.0001 11 6 5.5523 -2.6311 -0.0620 12 7 5.9912 -1.9373 -1.2796 13 6 7.3705 -2.0271 -1.4347 14 6 7.9861 -1.4222 -2.5481 15 6 9.3330 -1.5040 -2.7102 16 6 10.0977 -2.1982 -1.7532 17 7 11.3900 -2.4533 -1.6235 18 7 11.5812 -3.1411 -0.5520 19 6 10.4400 -3.3610 0.0532 20 6 10.2471 -4.1282 1.3359 21 9 11.3884 -3.9963 2.1342 22 9 9.1378 -3.6204 2.0206 23 7 9.4682 -2.7768 -0.6792 24 7 8.0828 -2.6704 -0.5395 25 6 5.5518 -0.5361 -1.2800 26 6 4.0227 -0.4797 -1.2542 27 1 -0.4851 0.8400 0.0004 28 1 3.8770 -0.6775 0.8874 29 1 3.6259 -3.1642 -0.8673 30 1 3.6980 -3.1385 0.9116 31 1 5.9193 -3.6573 -0.0766 32 1 5.9493 -2.1159 0.8127 33 1 7.3869 -0.8925 -3.2740 34 1 9.8106 -1.0426 -3.5619 35 1 10.0828 -5.1813 1.1081 36 1 5.9488 -0.0307 -0.3996 37 1 5.9184 -0.0407 -2.1791 38 1 3.6253 -0.9728 -2.1414 39 1 3.6971 0.5605 -1.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541006164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:45 Heat of formation + Delta-G solvation = 60.734213 kcal Electronic energy + Delta-G solvation = -27401.555422 eV Core-core repulsion = 23211.333603 eV Total energy + Delta-G solvation = -4190.221819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.36928 -47.38849 -43.72510 -40.38569 -37.86501 -34.66529 -34.35284 -32.22578 -31.54757 -30.77545 -30.48289 -27.16864 -26.64416 -24.88861 -23.61882 -22.84401 -21.94340 -21.87093 -19.38043 -19.15224 -18.23981 -18.11825 -17.61880 -17.22192 -16.92815 -16.69856 -16.56789 -15.03659 -14.78612 -14.56137 -14.31605 -14.20150 -14.07411 -13.69295 -13.54860 -13.45207 -13.20174 -13.04053 -12.79097 -12.50358 -12.27521 -12.06789 -11.97753 -11.69298 -11.31158 -11.17194 -10.93996 -10.72162 -10.63715 -10.33976 -10.15152 -9.87196 -9.35558 -9.17679 -9.12294 -8.82313 -8.67143 -6.19646 -4.19735 -0.05305 0.64219 1.20022 2.04106 2.64397 2.75559 3.11162 3.20961 3.22455 3.28682 3.56286 3.65923 3.76675 4.12591 4.26302 4.27257 4.38968 4.65982 4.91741 5.01534 5.05126 5.11912 5.23712 5.25504 5.29111 5.41207 5.51039 5.59748 5.66685 5.79733 5.98981 6.10122 6.31277 6.40772 6.56565 6.70790 6.80955 7.00605 7.17910 7.34388 7.60894 7.90659 8.38810 8.84809 9.41695 10.93695 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.003391 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.683034 B = 8254.135420 C = 9010.686988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.099 4.099 11 C 0.054 3.946 12 N -0.444 5.444 13 C 0.349 3.651 14 C -0.140 4.140 15 C -0.008 4.008 16 C 0.146 3.854 17 N -0.251 5.251 18 N -0.222 5.222 19 C 0.111 3.889 20 C 0.377 3.623 21 F -0.176 7.176 22 F -0.178 7.178 23 N -0.261 5.261 24 N -0.303 5.303 25 C 0.055 3.945 26 C -0.120 4.120 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.169 0.831 34 H 0.175 0.825 35 H 0.142 0.858 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.985 -4.589 -3.989 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.009 4.009 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.163 5.163 13 C 0.085 3.915 14 C -0.167 4.167 15 C -0.036 4.036 16 C -0.108 4.108 17 N -0.100 5.100 18 N -0.069 5.069 19 C -0.155 4.155 20 C 0.321 3.679 21 F -0.157 7.157 22 F -0.159 7.159 23 N -0.036 5.036 24 N -0.128 5.128 25 C -0.070 4.070 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.186 0.814 34 H 0.192 0.808 35 H 0.159 0.841 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.906 -5.244 -3.698 19.965 hybrid contribution -0.510 1.785 0.039 1.857 sum 18.396 -3.459 -3.659 19.072 Atomic orbital electron populations 1.69882 1.06282 1.27039 1.50360 1.25030 0.94682 0.98962 0.94484 0.86925 0.79987 0.83914 0.77923 1.20380 1.22241 1.19202 1.20977 0.88423 0.94590 1.51137 0.90622 1.19248 0.97222 0.91729 0.92662 1.21601 0.90043 0.99712 1.02366 1.22385 0.98671 0.98524 0.87558 1.59259 1.01396 1.16881 1.38779 1.21334 0.90892 0.89556 0.89764 1.21577 0.94764 1.01619 0.98744 1.20452 0.92002 0.94434 0.96732 1.22628 0.91713 1.03328 0.93114 1.75037 1.09962 1.13640 1.11394 1.74555 1.18457 1.11744 1.02172 1.24868 0.83906 1.06327 1.00420 1.19252 0.72861 0.97025 0.78751 1.93079 1.50965 1.97243 1.74455 1.93117 1.52627 1.89579 1.80586 1.47018 1.05456 1.33976 1.17139 1.76212 0.84319 1.29783 1.22443 1.22573 0.99977 0.82876 1.01555 1.22177 0.89318 1.01296 1.02979 0.92529 0.95510 0.91347 0.91101 0.90035 0.92715 0.81376 0.80793 0.84057 0.93091 0.90118 0.90395 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.96 55.43 0.77 -25.31 16 2 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 3 Si 0.88 20.09 24.37 -169.99 -4.14 15.95 16 4 H -0.28 -6.00 6.89 56.52 0.39 -5.61 16 5 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -5.76 6.53 56.52 0.37 -5.39 16 7 C -0.51 -13.21 9.14 -34.44 -0.31 -13.52 16 8 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.01 0.21 1.75 -91.65 -0.16 0.05 16 10 C -0.10 -1.72 5.32 -26.65 -0.14 -1.86 16 11 C 0.05 0.81 4.65 -3.84 -0.02 0.79 16 12 N -0.44 -6.08 4.68 -172.96 -0.81 -6.89 16 13 C 0.35 4.38 6.51 -155.24 -1.01 3.36 16 14 C -0.14 -1.30 9.11 -39.42 -0.36 -1.66 16 15 C -0.01 -0.08 10.11 -39.45 -0.40 -0.47 16 16 C 0.15 1.89 7.99 -156.08 -1.25 0.64 16 17 N -0.25 -3.62 12.33 31.13 0.38 -3.24 16 18 N -0.22 -3.26 12.15 32.78 0.40 -2.86 16 19 C 0.11 1.49 7.76 -155.02 -1.20 0.28 16 20 C 0.38 4.01 5.86 36.01 0.21 4.22 16 21 F -0.18 -2.02 17.28 2.25 0.04 -1.98 16 22 F -0.18 -2.25 16.91 2.25 0.04 -2.21 16 23 N -0.26 -3.63 4.00 -9.61 -0.04 -3.66 16 24 N -0.30 -4.22 9.84 31.32 0.31 -3.91 16 25 C 0.06 0.77 5.25 -3.83 -0.02 0.75 16 26 C -0.12 -2.16 4.84 -26.65 -0.13 -2.29 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.58 7.19 -51.93 -0.37 0.20 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.14 7.71 -51.93 -0.40 0.74 16 32 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.17 1.07 7.14 -52.48 -0.37 0.69 16 34 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.86 6.66 -51.93 -0.35 0.52 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.18 3.38 -51.93 -0.18 1.00 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -31.31 325.05 -7.27 -38.58 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.23 Total: -1.45 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.89 Total: -7.91 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 1.02 Total: -45.87 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.14 Total: 15.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.31 -7.27 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541006164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.311 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds