Wall clock time and date at job start Tue Mar 31 2020 14:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46738 * 299.99580 * 3 2 1 6 6 H 1.48499 * 109.47294 * 59.99291 * 3 2 1 7 7 C 1.37878 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53114 * 109.52140 * 179.97438 * 9 7 2 11 11 C 1.53047 * 109.27705 * 177.62159 * 10 9 7 12 12 N 1.46843 * 109.52111 * 300.82351 * 11 10 9 13 13 C 1.46905 * 110.99886 * 185.83921 * 12 11 10 14 14 C 1.52994 * 109.47157 * 169.99609 * 13 12 11 15 15 C 1.53002 * 109.47092 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.46950 * 180.02562 * 15 14 13 17 17 C 1.35902 * 116.99516 * 180.02562 * 16 15 14 18 18 C 1.38760 * 120.05170 * 359.97438 * 17 16 15 19 19 C 1.38127 * 119.96961 * 180.02562 * 18 17 16 20 20 C 1.38267 * 120.06820 * 359.97438 * 19 18 17 21 21 C 1.38364 * 120.10115 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 119.98689 * 180.02562 * 21 20 19 23 23 C 1.38276 * 120.02671 * 359.97438 * 21 20 19 24 24 C 1.46842 * 111.20358 * 61.74019 * 12 11 10 25 25 C 1.53043 * 109.52173 * 298.25813 * 24 12 11 26 26 H 0.96996 * 120.00208 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.51981 * 59.86717 * 9 7 2 28 28 H 1.08999 * 109.50596 * 57.68247 * 10 9 7 29 29 H 1.09000 * 109.50108 * 297.55883 * 10 9 7 30 30 H 1.08992 * 109.45980 * 180.79919 * 11 10 9 31 31 H 1.09004 * 109.45255 * 60.82773 * 11 10 9 32 32 H 1.08997 * 109.46691 * 49.99320 * 13 12 11 33 33 H 1.08996 * 109.46826 * 289.99724 * 13 12 11 34 34 H 1.09002 * 109.47503 * 59.99756 * 14 13 12 35 35 H 1.09009 * 109.47136 * 299.99991 * 14 13 12 36 36 H 1.08994 * 109.46909 * 60.00230 * 15 14 13 37 37 H 1.08996 * 109.46948 * 300.00149 * 15 14 13 38 38 H 1.07995 * 120.01132 * 0.04514 * 18 17 16 39 39 H 1.08005 * 119.96490 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.94717 * 180.02562 * 20 19 18 41 41 H 1.08007 * 120.03499 * 180.27362 * 23 21 20 42 42 H 1.08999 * 109.46291 * 58.27047 * 24 12 11 43 43 H 1.08998 * 109.46398 * 178.24361 * 24 12 11 44 44 H 1.08997 * 109.50242 * 299.23775 * 25 24 12 45 45 H 1.09001 * 109.50297 * 179.11874 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4751 -4.9852 0.0605 12 7 0.6533 -5.0195 1.2769 13 6 0.0070 -6.3288 1.4388 14 6 -0.6316 -6.4141 2.8265 15 6 -1.3054 -7.7775 2.9948 16 8 -1.9023 -7.8570 4.2908 17 6 -2.5463 -9.0122 4.6035 18 6 -2.6029 -10.0477 3.6816 19 6 -3.2583 -11.2209 4.0010 20 6 -3.8577 -11.3647 5.2387 21 6 -3.8030 -10.3339 6.1601 22 17 -4.5559 -10.5179 7.7135 23 6 -3.1479 -9.1578 5.8446 24 6 -0.3404 -3.9384 1.2772 25 6 0.3753 -2.5859 1.2536 26 1 -0.4850 0.8400 -0.0004 27 1 0.6227 -2.5570 -0.8882 28 1 2.8991 -3.5841 0.8688 29 1 2.8428 -3.6320 -0.9104 30 1 2.1804 -5.8161 0.0750 31 1 0.8315 -5.0704 -0.8151 32 1 0.7519 -7.1173 1.3324 33 1 -0.7626 -6.4507 0.6766 34 1 -1.3765 -5.6255 2.9329 35 1 0.1380 -6.2921 3.5888 36 1 -0.5608 -8.5663 2.8884 37 1 -2.0749 -7.8990 2.2326 38 1 -2.1344 -9.9365 2.7149 39 1 -3.3019 -12.0270 3.2835 40 1 -4.3693 -12.2829 5.4866 41 1 -3.1014 -8.3548 6.5655 42 1 -0.9755 -4.0287 0.3959 43 1 -0.9538 -4.0091 2.1754 44 1 1.0000 -2.4892 2.1415 45 1 -0.3627 -1.7839 1.2379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543811541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:35 Heat of formation + Delta-G solvation = -32.827924 kcal Electronic energy + Delta-G solvation = -23917.657777 eV Core-core repulsion = 20346.423072 eV Total energy + Delta-G solvation = -3571.234706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50876 -38.52951 -37.97355 -36.64632 -34.66147 -32.65731 -31.36444 -30.68858 -29.84443 -29.80673 -26.50115 -24.70826 -23.26352 -22.64352 -22.23915 -21.56945 -20.56679 -18.67518 -18.60514 -16.66001 -16.50546 -16.37481 -16.31836 -15.38321 -15.23736 -14.71071 -14.47105 -14.13566 -14.01915 -13.72264 -13.63927 -13.26253 -12.75391 -12.60037 -12.47476 -12.26333 -11.97219 -11.96282 -11.71047 -11.39599 -11.35039 -11.23160 -11.07662 -10.93696 -10.73526 -10.61395 -10.40568 -10.21374 -9.97685 -9.42062 -9.26410 -8.96652 -8.69079 -8.63138 -8.29226 -7.80824 -5.96863 -4.02003 0.71682 0.95008 1.65738 2.88633 3.23089 3.30781 3.38983 3.43016 4.30542 4.36110 4.45981 4.60262 4.68762 4.72594 4.76873 4.94367 5.01231 5.11442 5.21867 5.32475 5.35526 5.44775 5.61893 5.70006 5.74710 5.85519 5.86785 5.92574 6.00998 6.08921 6.10657 6.19901 6.25054 6.29551 6.61613 6.62333 6.84692 7.04728 7.07471 7.15410 7.42986 7.59838 7.66536 7.82885 8.05063 8.16132 8.48909 9.01933 9.62463 11.09408 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.001804 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.218293 B =15518.231123 C =16255.469604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.535 5.535 13 C 0.060 3.940 14 C -0.117 4.117 15 C 0.062 3.938 16 O -0.308 6.308 17 C 0.150 3.850 18 C -0.207 4.207 19 C -0.067 4.067 20 C -0.154 4.154 21 C 0.004 3.996 22 Cl -0.065 7.065 23 C -0.149 4.149 24 C 0.054 3.946 25 C -0.104 4.104 26 H 0.258 0.742 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.022 0.978 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -23.777 8.782 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.260 5.260 13 C -0.069 4.069 14 C -0.155 4.155 15 C -0.014 4.014 16 O -0.221 6.221 17 C 0.104 3.896 18 C -0.225 4.225 19 C -0.085 4.085 20 C -0.173 4.173 21 C -0.023 4.023 22 Cl -0.036 7.036 23 C -0.168 4.168 24 C -0.073 4.073 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.673 -23.397 9.418 26.362 hybrid contribution -0.205 0.628 -0.762 1.009 sum -7.878 -22.768 8.656 25.600 Atomic orbital electron populations 1.69883 1.05864 1.26195 1.51210 1.24979 0.94850 0.99042 0.95238 0.86575 0.80183 0.83975 0.77489 1.19834 1.21167 1.21076 1.21249 0.92922 0.90646 1.49928 0.92690 1.18694 0.92720 0.91794 0.93967 1.21684 0.98727 0.93696 1.00343 1.22115 0.95645 0.99389 0.89475 1.61950 1.23715 1.01766 1.38566 1.21884 0.97162 0.93181 0.94663 1.21556 1.00709 0.94486 0.98704 1.22902 0.96584 0.99812 0.82067 1.86110 1.66786 1.33413 1.35753 1.18812 0.91938 0.85787 0.93102 1.21431 1.05676 0.94691 1.00745 1.20908 0.94934 0.96913 0.95728 1.20950 1.03698 0.98967 0.93692 1.20568 0.98455 0.95311 0.87917 1.98383 1.80458 1.97554 1.27158 1.20246 1.01893 0.98272 0.96380 1.22354 0.93126 0.93096 0.98764 1.21664 1.00206 0.92990 0.99408 0.93163 0.96196 0.92431 0.93149 0.92437 0.95808 0.91207 0.95292 0.90373 0.89810 0.91748 0.91889 0.84694 0.84750 0.84857 0.84006 0.95969 0.92298 0.93783 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 11.37 55.43 0.63 -24.75 16 2 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.96 8.56 -34.44 -0.29 -14.25 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 10 C -0.11 -2.21 5.32 -26.65 -0.14 -2.35 16 11 C 0.06 1.07 5.46 -3.83 -0.02 1.05 16 12 N -0.53 -9.15 4.66 -234.67 -1.09 -10.24 16 13 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 14 C -0.12 -1.39 5.51 -26.73 -0.15 -1.54 16 15 C 0.06 0.60 4.74 37.16 0.18 0.78 16 16 O -0.31 -3.53 10.14 -19.43 -0.20 -3.73 16 17 C 0.15 1.55 6.69 -39.22 -0.26 1.29 16 18 C -0.21 -1.74 9.04 -39.43 -0.36 -2.10 16 19 C -0.07 -0.48 10.04 -39.61 -0.40 -0.88 16 20 C -0.15 -1.19 9.83 -39.52 -0.39 -1.58 16 21 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 22 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 23 C -0.15 -1.48 9.77 -39.40 -0.38 -1.87 16 24 C 0.05 1.03 5.29 -3.83 -0.02 1.01 16 25 C -0.10 -2.45 5.12 -26.65 -0.14 -2.58 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.80 7.99 -51.93 -0.41 0.38 16 33 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.08 1.02 6.43 -51.93 -0.33 0.69 16 35 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 36 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16 39 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.04 6.21 -51.93 -0.32 0.72 16 44 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 2.41 6.18 -51.93 -0.32 2.09 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -28.88 371.88 -11.64 -40.52 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.13 Total: -1.69 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.94 Total: -19.96 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.46 Total: -34.99 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.20 Total: -3.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.88 -11.64 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543811541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.694 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds