Wall clock time and date at job start Tue Mar 31 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46738 * 299.99580 * 3 2 1 6 6 H 1.48499 * 109.47294 * 59.99291 * 3 2 1 7 7 C 1.37878 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53114 * 109.52140 * 179.97438 * 9 7 2 11 11 C 1.53047 * 109.27705 * 177.62159 * 10 9 7 12 12 N 1.46843 * 109.52111 * 300.82351 * 11 10 9 13 13 C 1.46905 * 110.99886 * 185.83921 * 12 11 10 14 14 C 1.52994 * 109.47157 * 169.99609 * 13 12 11 15 15 C 1.53002 * 109.47092 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.46950 * 180.02562 * 15 14 13 17 17 C 1.35902 * 116.99516 * 180.02562 * 16 15 14 18 18 C 1.38760 * 120.05170 * 359.97438 * 17 16 15 19 19 C 1.38127 * 119.96961 * 180.02562 * 18 17 16 20 20 C 1.38267 * 120.06820 * 359.97438 * 19 18 17 21 21 C 1.38364 * 120.10115 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 119.98689 * 180.02562 * 21 20 19 23 23 C 1.38276 * 120.02671 * 359.97438 * 21 20 19 24 24 C 1.46842 * 111.20358 * 61.74019 * 12 11 10 25 25 C 1.53043 * 109.52173 * 298.25813 * 24 12 11 26 26 H 0.96996 * 120.00208 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.51981 * 59.86717 * 9 7 2 28 28 H 1.08999 * 109.50596 * 57.68247 * 10 9 7 29 29 H 1.09000 * 109.50108 * 297.55883 * 10 9 7 30 30 H 1.08992 * 109.45980 * 180.79919 * 11 10 9 31 31 H 1.09004 * 109.45255 * 60.82773 * 11 10 9 32 32 H 1.08997 * 109.46691 * 49.99320 * 13 12 11 33 33 H 1.08996 * 109.46826 * 289.99724 * 13 12 11 34 34 H 1.09002 * 109.47503 * 59.99756 * 14 13 12 35 35 H 1.09009 * 109.47136 * 299.99991 * 14 13 12 36 36 H 1.08994 * 109.46909 * 60.00230 * 15 14 13 37 37 H 1.08996 * 109.46948 * 300.00149 * 15 14 13 38 38 H 1.07995 * 120.01132 * 0.04514 * 18 17 16 39 39 H 1.08005 * 119.96490 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.94717 * 180.02562 * 20 19 18 41 41 H 1.08007 * 120.03499 * 180.27362 * 23 21 20 42 42 H 1.08999 * 109.46291 * 58.27047 * 24 12 11 43 43 H 1.08998 * 109.46398 * 178.24361 * 24 12 11 44 44 H 1.08997 * 109.50242 * 299.23775 * 25 24 12 45 45 H 1.09001 * 109.50297 * 179.11874 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4751 -4.9852 0.0605 12 7 0.6533 -5.0195 1.2769 13 6 0.0070 -6.3288 1.4388 14 6 -0.6316 -6.4141 2.8265 15 6 -1.3054 -7.7775 2.9948 16 8 -1.9023 -7.8570 4.2908 17 6 -2.5463 -9.0122 4.6035 18 6 -2.6029 -10.0477 3.6816 19 6 -3.2583 -11.2209 4.0010 20 6 -3.8577 -11.3647 5.2387 21 6 -3.8030 -10.3339 6.1601 22 17 -4.5559 -10.5179 7.7135 23 6 -3.1479 -9.1578 5.8446 24 6 -0.3404 -3.9384 1.2772 25 6 0.3753 -2.5859 1.2536 26 1 -0.4850 0.8400 -0.0004 27 1 0.6227 -2.5570 -0.8882 28 1 2.8991 -3.5841 0.8688 29 1 2.8428 -3.6320 -0.9104 30 1 2.1804 -5.8161 0.0750 31 1 0.8315 -5.0704 -0.8151 32 1 0.7519 -7.1173 1.3324 33 1 -0.7626 -6.4507 0.6766 34 1 -1.3765 -5.6255 2.9329 35 1 0.1380 -6.2921 3.5888 36 1 -0.5608 -8.5663 2.8884 37 1 -2.0749 -7.8990 2.2326 38 1 -2.1344 -9.9365 2.7149 39 1 -3.3019 -12.0270 3.2835 40 1 -4.3693 -12.2829 5.4866 41 1 -3.1014 -8.3548 6.5655 42 1 -0.9755 -4.0287 0.3959 43 1 -0.9538 -4.0091 2.1754 44 1 1.0000 -2.4892 2.1415 45 1 -0.3627 -1.7839 1.2379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543811541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:34 Heat of formation + Delta-G solvation = -47.570713 kcal Electronic energy + Delta-G solvation = -23918.297073 eV Core-core repulsion = 20346.423072 eV Total energy + Delta-G solvation = -3571.874001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19885 -39.91009 -38.76281 -37.30912 -36.20157 -34.21944 -32.40186 -31.71836 -31.45640 -30.65145 -28.02879 -26.05753 -24.23444 -23.77238 -23.53419 -22.71596 -21.69244 -20.35231 -19.36519 -18.44541 -17.40481 -17.29788 -17.00470 -16.71672 -16.22829 -16.04072 -15.85434 -15.25113 -14.92945 -14.79186 -14.59541 -14.54690 -14.30391 -14.08632 -13.97525 -13.20564 -13.00660 -12.89996 -12.83274 -12.70954 -12.62847 -12.52354 -12.16347 -12.10841 -12.08186 -11.93416 -11.83961 -11.77798 -11.55511 -11.26619 -10.79274 -10.61678 -10.37372 -9.90086 -9.29660 -9.17386 -8.08129 -6.21224 0.08727 0.31582 1.00958 1.39394 1.41517 1.52739 2.14192 2.43627 2.60573 3.09890 3.18945 3.74945 3.89418 3.98086 4.04264 4.09423 4.14605 4.20498 4.31308 4.35504 4.37614 4.42772 4.44100 4.55075 4.59118 4.70567 4.78262 4.80042 4.89714 4.97886 5.05120 5.12730 5.17647 5.21135 5.25522 5.29088 5.33634 5.36738 5.57021 5.58545 5.63640 6.01266 6.03667 6.29420 6.33747 6.39052 6.41607 6.90971 7.46542 8.96539 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.001804 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.218293 B =15518.231123 C =16255.469604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.101 4.101 11 C 0.067 3.933 12 N -0.545 5.545 13 C 0.062 3.938 14 C -0.111 4.111 15 C 0.066 3.934 16 O -0.331 6.331 17 C 0.130 3.870 18 C -0.207 4.207 19 C -0.062 4.062 20 C -0.154 4.154 21 C -0.006 4.006 22 Cl -0.066 7.066 23 C -0.167 4.167 24 C 0.067 3.933 25 C -0.096 4.096 26 H 0.259 0.741 27 H -0.012 1.012 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.023 0.977 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -26.281 8.358 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.139 4.139 11 C -0.060 4.060 12 N -0.270 5.270 13 C -0.065 4.065 14 C -0.149 4.149 15 C -0.009 4.009 16 O -0.245 6.245 17 C 0.084 3.916 18 C -0.226 4.226 19 C -0.080 4.080 20 C -0.173 4.173 21 C -0.033 4.033 22 Cl -0.037 7.037 23 C -0.187 4.187 24 C -0.061 4.061 25 C -0.135 4.135 26 H 0.069 0.931 27 H 0.006 0.994 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.041 0.959 32 H 0.115 0.885 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.033 0.967 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.310 -25.920 8.997 28.394 hybrid contribution -0.336 1.372 -0.617 1.541 sum -7.647 -24.548 8.380 27.043 Atomic orbital electron populations 1.70022 1.07125 1.26941 1.51710 1.25759 0.95710 1.02393 0.94974 0.85581 0.79130 0.79864 0.77529 1.19178 1.20659 1.20724 1.21634 0.93006 0.92300 1.50018 0.93097 1.18679 0.93236 0.92735 0.92985 1.21555 0.97979 0.94145 1.00215 1.22050 0.96006 0.98345 0.89639 1.61876 1.23548 1.03134 1.38417 1.21966 0.98030 0.91244 0.95300 1.21434 1.00016 0.95572 0.97873 1.22872 0.97340 0.98804 0.81919 1.86056 1.67409 1.34422 1.36574 1.18994 0.92767 0.86124 0.93749 1.21699 1.05486 0.94402 1.01013 1.21305 0.93556 0.97230 0.95924 1.21280 1.03244 0.99154 0.93587 1.20707 0.98734 0.95544 0.88310 1.98379 1.80449 1.97526 1.27339 1.20325 1.02918 0.98743 0.96691 1.22070 0.93081 0.91789 0.99118 1.21423 0.99149 0.94828 0.98074 0.93141 0.99376 0.93102 0.92747 0.88930 0.95863 0.88540 0.94328 0.92135 0.90862 0.89666 0.90567 0.82874 0.81574 0.82920 0.84784 0.96700 0.90925 0.95257 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.77 11.37 21.45 0.24 -53.53 16 2 C 0.01 0.55 5.31 84.65 0.45 1.00 16 3 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.53 -29.86 8.56 25.60 0.22 -29.64 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.04 2.14 2.16 -11.46 -0.02 2.12 16 10 C -0.10 -4.16 5.32 30.65 0.16 -4.00 16 11 C 0.07 2.20 5.46 86.33 0.47 2.67 16 12 N -0.54 -17.74 4.66 -896.37 -4.17 -21.91 16 13 C 0.06 1.44 4.96 86.30 0.43 1.87 16 14 C -0.11 -2.46 5.51 30.59 0.17 -2.29 16 15 C 0.07 1.12 4.74 71.98 0.34 1.46 16 16 O -0.33 -7.30 10.14 -92.44 -0.94 -8.24 16 17 C 0.13 2.54 6.69 22.50 0.15 2.69 16 18 C -0.21 -2.95 9.04 22.37 0.20 -2.75 16 19 C -0.06 -0.69 10.04 22.25 0.22 -0.47 16 20 C -0.15 -2.02 9.83 22.31 0.22 -1.80 16 21 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 22 Cl -0.07 -1.08 28.95 -2.72 -0.08 -1.16 16 23 C -0.17 -3.32 9.77 22.39 0.22 -3.10 16 24 C 0.07 2.58 5.29 86.33 0.46 3.03 16 25 C -0.10 -4.67 5.12 30.65 0.16 -4.51 16 26 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.44 8.01 -2.39 -0.02 2.42 16 31 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.10 1.78 7.99 -2.39 -0.02 1.76 16 33 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.06 1.54 6.43 -2.39 -0.02 1.53 16 35 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.09 1.10 7.66 -2.39 -0.02 1.09 16 37 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 38 H 0.15 1.53 6.30 -2.91 -0.02 1.51 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 2.57 6.21 -2.39 -0.01 2.55 16 44 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 3.24 6.18 -2.39 -0.01 3.22 16 Total: -1.00 -64.50 371.88 2.03 -62.47 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.96 Total: 9.68 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 3.98 Total: -33.66 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -3.93 Total: -75.44 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.94 Total: -8.24 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -64.50 2.03 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543811541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.903 kcal (2) G-P(sol) polarization free energy of solvation -64.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds