Wall clock time and date at job start Tue Mar 31 2020 14:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48501 * 109.47619 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47148 * 300.00065 * 3 2 1 6 6 H 1.48505 * 109.46900 * 59.99790 * 3 2 1 7 7 C 1.37880 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52013 * 179.97438 * 9 7 2 11 11 C 1.53031 * 109.27648 * 182.37636 * 10 9 7 12 12 N 1.46848 * 109.52346 * 59.17969 * 11 10 9 13 13 C 1.46905 * 110.99892 * 174.16143 * 12 11 10 14 14 C 1.53000 * 109.46856 * 176.20770 * 13 12 11 15 15 H 1.09001 * 109.46895 * 298.75143 * 14 13 12 16 16 O 1.42891 * 109.47415 * 58.75839 * 14 13 12 17 17 C 1.53005 * 109.46945 * 178.76055 * 14 13 12 18 18 C 1.50695 * 109.47285 * 175.00027 * 17 14 13 19 19 C 1.38265 * 119.99641 * 89.99314 * 18 17 14 20 20 C 1.38220 * 120.02586 * 180.02562 * 19 18 17 21 21 C 1.38233 * 120.01581 * 359.97438 * 20 19 18 22 22 C 1.38329 * 119.98495 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 120.01174 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99282 * 269.72538 * 18 17 14 25 25 C 1.46846 * 111.19721 * 298.25532 * 12 11 10 26 26 C 1.53032 * 109.52390 * 61.74616 * 25 12 11 27 27 H 0.97005 * 119.99963 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.51946 * 300.12049 * 9 7 2 29 29 H 1.08999 * 109.50288 * 62.43807 * 10 9 7 30 30 H 1.08993 * 109.53472 * 302.33883 * 10 9 7 31 31 H 1.09004 * 109.46219 * 299.16667 * 11 10 9 32 32 H 1.09000 * 109.45775 * 179.19445 * 11 10 9 33 33 H 1.08996 * 109.47120 * 296.20311 * 13 12 11 34 34 H 1.09001 * 109.47257 * 56.20304 * 13 12 11 35 35 H 0.96696 * 114.00482 * 59.99566 * 16 14 13 36 36 H 1.09001 * 109.46698 * 294.99506 * 17 14 13 37 37 H 1.08997 * 109.47363 * 54.99424 * 17 14 13 38 38 H 1.07998 * 119.98349 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.99239 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.00949 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.00613 * 0.02562 * 24 18 17 42 42 H 1.09008 * 109.45790 * 181.75797 * 25 12 11 43 43 H 1.09002 * 109.46554 * 301.72617 * 25 12 11 44 44 H 1.08994 * 109.50977 * 180.87722 * 26 25 12 45 45 H 1.09005 * 109.53979 * 60.77363 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4751 -4.9851 -0.0594 12 7 0.6533 -5.0195 -1.2758 13 6 0.0069 -6.3288 -1.4376 14 6 -0.9124 -6.2960 -2.6602 15 1 -1.6878 -5.5444 -2.5117 16 8 -0.1481 -5.9687 -3.8223 17 6 -1.5619 -7.6687 -2.8468 18 6 -2.5593 -7.6034 -3.9746 19 6 -2.1572 -7.8743 -5.2695 20 6 -3.0714 -7.8141 -6.3045 21 6 -4.3884 -7.4835 -6.0455 22 6 -4.7912 -7.2123 -4.7502 23 17 -6.4448 -6.7964 -4.4243 24 6 -3.8768 -7.2782 -3.7137 25 6 -0.3405 -3.9384 -1.2760 26 6 0.3751 -2.5859 -1.2525 27 1 -0.4850 0.8401 -0.0004 28 1 0.6221 -2.5566 0.8889 29 1 2.8428 -3.6321 0.9114 30 1 2.8995 -3.5844 -0.8673 31 1 0.8315 -5.0705 0.8162 32 1 2.1805 -5.8160 -0.0739 33 1 0.7690 -7.0955 -1.5766 34 1 -0.5799 -6.5567 -0.5477 35 1 0.5617 -6.5962 -4.0158 36 1 -0.7937 -8.4049 -3.0833 37 1 -2.0713 -7.9576 -1.9275 38 1 -1.1283 -8.1323 -5.4723 39 1 -2.7568 -8.0263 -7.3156 40 1 -5.1025 -7.4361 -6.8543 41 1 -4.1917 -7.0704 -2.7017 42 1 -0.9539 -4.0092 -2.1743 43 1 -0.9756 -4.0287 -0.3947 44 1 -0.3628 -1.7839 -1.2369 45 1 0.9998 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558096737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:52 Heat of formation + Delta-G solvation = -62.528521 kcal Electronic energy + Delta-G solvation = -24912.512693 eV Core-core repulsion = 21339.990072 eV Total energy + Delta-G solvation = -3572.522620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67303 -39.90125 -38.11712 -37.34556 -35.51591 -33.81766 -33.17517 -31.63334 -31.46930 -30.27394 -27.97850 -26.06096 -24.24145 -23.60417 -23.47888 -22.26994 -21.75267 -20.33497 -18.47278 -18.08641 -17.26013 -16.97312 -16.70339 -16.24977 -16.14486 -16.08296 -15.79437 -15.19336 -14.76687 -14.64519 -14.62665 -14.29924 -14.23257 -14.02881 -13.70967 -13.12091 -13.06956 -12.85180 -12.73514 -12.53636 -12.42974 -12.38489 -12.29553 -12.14716 -12.03086 -11.86020 -11.81312 -11.66321 -11.32025 -10.92921 -10.78006 -10.55329 -10.36472 -9.79640 -9.55209 -9.09662 -8.07734 -6.21137 0.24160 0.32860 1.16436 1.39367 1.41118 1.52659 2.43728 2.66309 3.03365 3.19120 3.59790 3.75156 3.90077 3.98572 4.12387 4.20749 4.21797 4.32976 4.35240 4.36799 4.43135 4.49181 4.57600 4.60179 4.75939 4.78182 4.83308 4.92019 4.93188 4.99492 5.05408 5.09387 5.21384 5.25289 5.29413 5.36131 5.42843 5.58802 5.61132 5.63811 5.91454 6.01343 6.04211 6.31647 6.38413 6.41623 6.91158 7.07860 7.46614 8.96907 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002633 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.135290 B =10631.242114 C =11583.334549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.100 4.100 11 C 0.066 3.934 12 N -0.531 5.531 13 C 0.023 3.977 14 C 0.120 3.880 15 H 0.073 0.927 16 O -0.559 6.559 17 C -0.103 4.103 18 C -0.068 4.068 19 C -0.103 4.103 20 C -0.109 4.109 21 C -0.126 4.126 22 C -0.050 4.050 23 Cl -0.082 7.082 24 C -0.127 4.127 25 C 0.071 3.929 26 C -0.093 4.093 27 H 0.259 0.741 28 H -0.014 1.014 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.384 0.616 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.008 0.992 44 H 0.055 0.945 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -22.117 -10.451 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.062 4.062 12 N -0.256 5.256 13 C -0.105 4.105 14 C 0.061 3.939 15 H 0.091 0.909 16 O -0.366 6.366 17 C -0.141 4.141 18 C -0.068 4.068 19 C -0.121 4.121 20 C -0.127 4.127 21 C -0.145 4.145 22 C -0.076 4.076 23 Cl -0.053 7.053 24 C -0.146 4.146 25 C -0.057 4.057 26 C -0.131 4.131 27 H 0.068 0.932 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.233 0.767 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.167 0.833 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.714 -21.388 -10.824 24.893 hybrid contribution -0.394 0.960 1.062 1.485 sum -7.108 -20.428 -9.762 23.731 Atomic orbital electron populations 1.70037 1.07200 1.26906 1.51710 1.25773 0.95693 1.02459 0.94943 0.85573 0.79151 0.79798 0.77538 1.19076 1.20707 1.20631 1.21631 0.92991 0.92290 1.50036 0.93066 1.18666 0.93187 0.92808 0.92814 1.21535 0.97940 0.94169 1.00133 1.22063 0.96127 0.98261 0.89724 1.61912 1.23191 1.02794 1.37664 1.22946 0.98199 0.91521 0.97807 1.21807 0.92080 0.95461 0.84589 0.90949 1.86640 1.49424 1.55362 1.45153 1.21299 0.98013 0.97667 0.97087 1.19859 0.93040 0.98015 0.95936 1.21443 1.00844 0.98218 0.91617 1.21454 0.91990 0.98416 1.00843 1.21293 0.97839 1.00487 0.94865 1.21090 0.85783 1.04995 0.95762 1.98364 1.18880 1.92168 1.95913 1.21115 0.93065 1.01466 0.98946 1.22014 0.93204 0.92043 0.98438 1.21375 0.99014 0.94761 0.97971 0.93188 0.99591 0.92854 0.93077 0.96309 0.88966 0.87995 0.94143 0.76711 0.87483 0.89025 0.83333 0.82690 0.83952 0.85199 0.91270 0.97365 0.92642 0.95479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 11.37 21.45 0.24 -54.58 16 2 C 0.01 0.54 5.31 84.66 0.45 0.99 16 3 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.53 -30.34 8.57 25.60 0.22 -30.12 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.28 2.16 -11.46 -0.02 2.25 16 10 C -0.10 -4.20 5.32 30.65 0.16 -4.03 16 11 C 0.07 2.21 5.46 86.32 0.47 2.68 16 12 N -0.53 -17.53 4.61 -896.35 -4.13 -21.66 16 13 C 0.02 0.52 4.79 86.30 0.41 0.94 16 14 C 0.12 2.58 2.37 30.60 0.07 2.65 16 15 H 0.07 1.98 6.27 -2.39 -0.01 1.97 16 16 O -0.56 -13.07 12.67 -148.98 -1.89 -14.96 16 17 C -0.10 -1.49 5.03 29.85 0.15 -1.34 16 18 C -0.07 -1.20 4.97 -19.87 -0.10 -1.30 16 19 C -0.10 -1.59 9.40 22.27 0.21 -1.38 16 20 C -0.11 -1.62 10.05 22.26 0.22 -1.40 16 21 C -0.13 -2.20 9.83 22.29 0.22 -1.98 16 22 C -0.05 -1.03 6.32 22.32 0.14 -0.88 16 23 Cl -0.08 -1.69 28.96 -2.72 -0.08 -1.77 16 24 C -0.13 -2.59 9.49 22.29 0.21 -2.37 16 25 C 0.07 2.85 5.04 86.32 0.43 3.28 16 26 C -0.09 -4.66 5.12 30.65 0.16 -4.50 16 27 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 28 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.38 5.78 9.05 -74.06 -0.67 5.11 16 36 H 0.11 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.09 1.19 8.08 -2.39 -0.02 1.18 16 38 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.07 2.69 5.87 -2.38 -0.01 2.67 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.06 3.15 6.17 -2.39 -0.01 3.13 16 45 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -68.24 372.75 -0.11 -68.34 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.31 Total: 14.20 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.41 Total: -36.52 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -3.88 Total: -76.24 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.89 Total: -14.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -68.24 -0.11 -68.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558096737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.816 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds