Wall clock time and date at job start Tue Mar 31 2020 14:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48493 * 109.47361 * 239.99828 * 3 2 1 5 5 H 1.48495 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46638 * 120.00263 * 3 2 1 7 7 C 1.37882 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.53118 * 109.52193 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.28139 * 182.37649 * 10 9 7 12 12 N 1.46852 * 109.52307 * 59.17816 * 11 10 9 13 13 C 1.46896 * 110.99944 * 174.16326 * 12 11 10 14 14 C 1.53007 * 109.47088 * 293.87980 * 13 12 11 15 15 H 1.08994 * 109.47116 * 60.66139 * 14 13 12 16 16 O 1.42900 * 109.46977 * 300.66398 * 14 13 12 17 17 C 1.52998 * 109.46910 * 180.66664 * 14 13 12 18 18 C 1.50701 * 109.46819 * 184.99526 * 17 14 13 19 19 C 1.38274 * 119.99111 * 90.00007 * 18 17 14 20 20 C 1.38216 * 120.02424 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.01672 * 0.25742 * 20 19 18 22 22 C 1.38333 * 119.98346 * 359.50760 * 21 20 19 23 23 Cl 1.73601 * 120.01080 * 180.25475 * 22 21 20 24 24 C 1.38189 * 119.99697 * 270.02037 * 18 17 14 25 25 C 1.46846 * 111.19584 * 298.26005 * 12 11 10 26 26 C 1.53036 * 109.52574 * 61.74182 * 25 12 11 27 27 H 0.96995 * 119.99590 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.52226 * 300.12389 * 9 7 2 29 29 H 1.08998 * 109.50352 * 62.43129 * 10 9 7 30 30 H 1.09009 * 109.53444 * 302.33753 * 10 9 7 31 31 H 1.08996 * 109.46077 * 299.16199 * 11 10 9 32 32 H 1.09005 * 109.45618 * 179.18874 * 11 10 9 33 33 H 1.08996 * 109.47040 * 173.88282 * 13 12 11 34 34 H 1.09001 * 109.47438 * 53.87635 * 13 12 11 35 35 H 0.96703 * 114.00210 * 300.00510 * 16 14 13 36 36 H 1.09001 * 109.47213 * 64.99945 * 17 14 13 37 37 H 1.08995 * 109.47231 * 304.99266 * 17 14 13 38 38 H 1.08004 * 119.98613 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.98802 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00830 * 179.74853 * 21 20 19 41 41 H 1.07997 * 120.00856 * 359.97438 * 24 18 17 42 42 H 1.09000 * 109.46140 * 181.75609 * 25 12 11 43 43 H 1.08997 * 109.46364 * 301.72594 * 25 12 11 44 44 H 1.08995 * 109.50305 * 180.87698 * 26 25 12 45 45 H 1.09006 * 109.50122 * 60.75591 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4751 -4.9851 -0.0604 12 7 0.6532 -5.0195 -1.2769 13 6 0.0069 -6.3287 -1.4387 14 6 1.0734 -7.3963 -1.6915 15 1 1.7526 -7.4401 -0.8402 16 8 1.8088 -7.0649 -2.8711 17 6 0.3989 -8.7571 -1.8765 18 6 1.4528 -9.8269 -2.0031 19 6 1.9220 -10.4720 -0.8737 20 6 2.8881 -11.4536 -0.9891 21 6 3.3897 -11.7873 -2.2332 22 6 2.9172 -11.1457 -3.3639 23 17 3.5419 -11.5689 -4.9274 24 6 1.9503 -10.1627 -3.2479 25 6 -0.3405 -3.9384 -1.2771 26 6 0.3752 -2.5859 -1.2535 27 1 -0.4849 0.8400 -0.0004 28 1 0.6227 -2.5569 0.8882 29 1 2.8429 -3.6320 0.9102 30 1 2.8996 -3.5844 -0.8685 31 1 0.8316 -5.0705 0.8152 32 1 2.1805 -5.8160 -0.0751 33 1 -0.6793 -6.2930 -2.2849 34 1 -0.5463 -6.5753 -0.5324 35 1 1.2666 -7.0083 -3.6698 36 1 -0.2119 -8.7402 -2.7792 37 1 -0.2328 -8.9697 -1.0142 38 1 1.5334 -10.2087 0.0990 39 1 3.2545 -11.9568 -0.1065 40 1 4.1476 -12.5516 -2.3228 41 1 1.5837 -9.6589 -4.1300 42 1 -0.9539 -4.0090 -2.1753 43 1 -0.9755 -4.0286 -0.3958 44 1 -0.3628 -1.7839 -1.2379 45 1 0.9999 -2.4892 -2.1415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558096759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:55 Heat of formation + Delta-G solvation = -63.930071 kcal Electronic energy + Delta-G solvation = -24762.307793 eV Core-core repulsion = 21189.724397 eV Total energy + Delta-G solvation = -3572.583396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62659 -39.86754 -38.10722 -37.32407 -35.52104 -33.77770 -33.16667 -31.66404 -31.50031 -30.20903 -27.97466 -26.05699 -24.17753 -23.58402 -23.39717 -22.27974 -21.83933 -20.33392 -18.45655 -18.05535 -17.24977 -16.95554 -16.66159 -16.28413 -16.19417 -16.04769 -15.73919 -15.15464 -14.84540 -14.67002 -14.49662 -14.33670 -14.20512 -13.89144 -13.83577 -13.11144 -12.93694 -12.81576 -12.80521 -12.57761 -12.43758 -12.40153 -12.21759 -12.12607 -12.04043 -11.86908 -11.81781 -11.64612 -11.35169 -10.95803 -10.68251 -10.64848 -10.35614 -9.77366 -9.54557 -9.07082 -8.07637 -6.20683 0.23350 0.37046 1.19633 1.41155 1.42579 1.50134 2.44065 2.66810 3.02586 3.19002 3.63426 3.75442 3.93901 3.98663 4.14983 4.17476 4.25014 4.32079 4.37972 4.40366 4.45174 4.48965 4.54868 4.63027 4.74342 4.79384 4.86370 4.89010 4.92535 4.96560 5.09076 5.11471 5.20559 5.25395 5.31329 5.36865 5.42667 5.57466 5.61667 5.63784 5.91778 6.01933 6.04904 6.33578 6.38049 6.42455 6.90298 7.04524 7.46668 8.96699 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.002242 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.529627 B =12483.861353 C =12696.001207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.045 3.955 10 C -0.099 4.099 11 C 0.069 3.931 12 N -0.533 5.533 13 C 0.022 3.978 14 C 0.126 3.874 15 H 0.084 0.916 16 O -0.561 6.561 17 C -0.105 4.105 18 C -0.068 4.068 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.127 4.127 22 C -0.049 4.049 23 Cl -0.080 7.080 24 C -0.106 4.106 25 C 0.070 3.930 26 C -0.095 4.095 27 H 0.260 0.740 28 H -0.012 1.012 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.380 0.620 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.015 0.985 44 H 0.061 0.939 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -26.049 -4.738 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.059 4.059 12 N -0.258 5.258 13 C -0.106 4.106 14 C 0.067 3.933 15 H 0.102 0.898 16 O -0.367 6.367 17 C -0.143 4.143 18 C -0.068 4.068 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.145 4.145 22 C -0.076 4.076 23 Cl -0.051 7.051 24 C -0.125 4.125 25 C -0.058 4.058 26 C -0.134 4.134 27 H 0.069 0.931 28 H 0.006 0.994 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.229 0.771 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.079 0.921 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.892 -25.879 -4.858 26.346 hybrid contribution -0.522 1.134 0.221 1.268 sum 0.370 -24.745 -4.637 25.178 Atomic orbital electron populations 1.70000 1.07052 1.27105 1.51497 1.25727 0.95721 1.02258 0.94864 0.85709 0.78487 0.79294 0.78749 1.19836 1.20779 1.19743 1.21560 0.92899 0.92413 1.50416 0.93402 1.18641 0.93120 0.92448 0.93106 1.21523 0.98020 0.94426 0.99746 1.22018 0.96103 0.97898 0.89898 1.61835 1.23200 1.02869 1.37885 1.22930 0.96672 0.89103 1.01879 1.21794 0.92511 0.90345 0.88688 0.89773 1.86627 1.38870 1.92915 1.18315 1.21308 0.95935 0.91741 1.05296 1.19836 0.97776 0.96713 0.92466 1.21489 0.97312 0.96121 0.99118 1.21399 0.96390 0.97461 0.97466 1.21286 1.01038 1.00856 0.91357 1.21116 0.99546 1.00177 0.86744 1.98364 1.86559 1.92739 1.27478 1.21045 0.96438 0.96268 0.98743 1.22030 0.92880 0.91663 0.99195 1.21410 0.99099 0.94977 0.97887 0.93057 0.99381 0.93238 0.93610 0.96057 0.90097 0.89230 0.93647 0.77145 0.88791 0.88157 0.83811 0.82872 0.83988 0.84693 0.90682 0.96703 0.92067 0.95390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.62 11.37 21.45 0.24 -53.38 16 2 C 0.01 0.72 5.31 84.66 0.45 1.17 16 3 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.53 -30.49 8.56 25.60 0.22 -30.27 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.34 2.16 -11.46 -0.02 2.32 16 10 C -0.10 -4.30 5.32 30.65 0.16 -4.13 16 11 C 0.07 2.39 5.29 86.32 0.46 2.85 16 12 N -0.53 -17.57 4.51 -896.36 -4.04 -21.62 16 13 C 0.02 0.50 4.63 86.31 0.40 0.90 16 14 C 0.13 2.50 2.83 30.60 0.09 2.59 16 15 H 0.08 1.91 6.47 -2.39 -0.02 1.89 16 16 O -0.56 -13.23 12.68 -148.98 -1.89 -15.12 16 17 C -0.10 -1.43 5.03 29.85 0.15 -1.28 16 18 C -0.07 -1.10 4.97 -19.87 -0.10 -1.20 16 19 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 20 C -0.11 -1.52 10.04 22.26 0.22 -1.30 16 21 C -0.13 -2.03 9.83 22.29 0.22 -1.81 16 22 C -0.05 -0.91 6.32 22.32 0.14 -0.77 16 23 Cl -0.08 -1.47 28.96 -2.72 -0.08 -1.55 16 24 C -0.11 -1.91 9.18 22.29 0.20 -1.70 16 25 C 0.07 2.65 5.46 86.33 0.47 3.12 16 26 C -0.10 -4.62 5.12 30.65 0.16 -4.46 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 2.49 6.24 -2.38 -0.01 2.47 16 33 H 0.09 1.76 7.98 -2.39 -0.02 1.74 16 34 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.38 6.52 9.05 -74.05 -0.67 5.85 16 36 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 37 H 0.10 1.08 8.08 -2.39 -0.02 1.06 16 38 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 3.32 6.18 -2.39 -0.01 3.31 16 45 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -66.29 373.49 0.00 -66.29 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.31 Total: 14.38 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.43 Total: -35.57 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -3.80 Total: -74.99 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.89 Total: -15.12 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -66.29 0.00 -66.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558096759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.362 kcal (2) G-P(sol) polarization free energy of solvation -66.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds