Wall clock time and date at job start Tue Mar 31 2020 13:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47447 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46906 * 300.00056 * 3 2 1 6 6 H 1.48508 * 109.47295 * 59.99980 * 3 2 1 7 7 C 1.37877 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99893 * 186.11381 * 7 2 1 9 9 C 1.50696 * 120.00022 * 6.12635 * 7 2 1 10 10 H 1.08995 * 109.47480 * 25.83838 * 9 7 2 11 11 C 1.53005 * 109.47442 * 145.83905 * 9 7 2 12 12 C 1.50692 * 109.47154 * 294.99922 * 11 9 7 13 13 O 1.21288 * 120.00105 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00214 * 180.02562 * 12 11 9 15 15 C 1.46723 * 126.55866 * 180.02562 * 14 12 11 16 16 C 1.50474 * 107.64929 * 179.97438 * 15 14 12 17 17 C 1.38516 * 132.35658 * 179.97438 * 16 15 14 18 18 N 1.32392 * 118.91828 * 180.02562 * 17 16 15 19 19 C 1.31809 * 120.79619 * 359.97438 * 18 17 16 20 20 N 1.31812 * 121.84158 * 359.97438 * 19 18 17 21 21 C 1.32393 * 120.69229 * 0.02562 * 20 19 18 22 22 C 1.46710 * 126.55770 * 0.24823 * 14 12 11 23 23 C 1.50709 * 109.47210 * 265.83669 * 9 7 2 24 24 C 1.38236 * 119.99520 * 303.47441 * 23 9 7 25 25 C 1.38238 * 119.99161 * 179.78357 * 24 23 9 26 26 C 1.38229 * 120.00272 * 0.43914 * 25 24 23 27 27 C 1.38236 * 120.00229 * 359.81142 * 26 25 24 28 28 C 1.38230 * 119.99579 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46861 * 174.99367 * 11 9 7 31 31 H 1.09001 * 109.46947 * 54.99666 * 11 9 7 32 32 H 1.08999 * 109.82503 * 60.46585 * 15 14 12 33 33 H 1.09006 * 109.88549 * 299.56317 * 15 14 12 34 34 H 1.07998 * 120.53863 * 0.05918 * 17 16 15 35 35 H 1.07992 * 119.08105 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.88852 * 60.53163 * 22 14 12 37 37 H 1.08997 * 109.72810 * 299.62870 * 22 14 12 38 38 H 1.08000 * 120.00458 * 359.97438 * 24 23 9 39 39 H 1.08005 * 119.99793 * 180.27162 * 25 24 23 40 40 H 1.08005 * 120.00060 * 179.83748 * 26 25 24 41 41 H 1.08001 * 120.00169 * 179.97438 * 27 26 25 42 42 H 1.08009 * 119.99800 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0799 -1.1967 0.1002 9 6 1.2574 -2.4954 -0.1382 10 1 0.3200 -2.3218 -0.6665 11 6 2.1101 -3.4916 -0.9265 12 6 2.2982 -2.9880 -2.3343 13 8 1.7990 -1.9361 -2.6739 14 7 3.0204 -3.7070 -3.2164 15 6 3.2943 -3.3551 -4.6142 16 6 4.1380 -4.4526 -5.2041 17 6 4.6788 -4.6384 -6.4657 18 7 5.3950 -5.7266 -6.7013 19 6 5.5939 -6.6218 -5.7544 20 7 5.0947 -6.4755 -4.5433 21 6 4.3684 -5.4122 -4.2356 22 6 3.6791 -4.9933 -2.9639 23 6 0.9664 -3.0560 1.2302 24 6 2.0019 -3.2906 2.1154 25 6 1.7345 -3.8006 3.3722 26 6 0.4328 -4.0844 3.7403 27 6 -0.6022 -3.8546 2.8532 28 6 -0.3353 -3.3405 1.5981 29 1 -0.4850 0.8400 -0.0004 30 1 1.6091 -4.4593 -0.9507 31 1 3.0825 -3.5978 -0.4457 32 1 3.8350 -2.4097 -4.6583 33 1 2.3579 -3.2713 -5.1659 34 1 4.5193 -3.9072 -7.2442 35 1 6.1823 -7.4995 -5.9771 36 1 2.9376 -5.7403 -2.6807 37 1 4.4139 -4.8802 -2.1669 38 1 3.0194 -3.0726 1.8263 39 1 2.5431 -3.9798 4.0654 40 1 0.2242 -4.4853 4.7213 41 1 -1.6193 -4.0768 3.1407 42 1 -1.1439 -3.1614 0.9048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565216402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:34 Heat of formation + Delta-G solvation = 55.580970 kcal Electronic energy + Delta-G solvation = -26215.018508 eV Core-core repulsion = 22546.510006 eV Total energy + Delta-G solvation = -3668.508502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75401 -39.36005 -38.31368 -36.74272 -34.10391 -33.92198 -32.08219 -31.39937 -30.02307 -29.18338 -28.57397 -26.78517 -25.23021 -23.25176 -23.01975 -22.33972 -21.61856 -20.01460 -19.04520 -17.73143 -17.19787 -16.67106 -16.39890 -16.15259 -15.77503 -15.41820 -14.69898 -14.55222 -14.18531 -13.93941 -13.92279 -13.78367 -13.36714 -13.22599 -13.17179 -12.57468 -12.53640 -12.29844 -11.96011 -11.77205 -11.64489 -11.19244 -10.91735 -10.90312 -10.77318 -10.58154 -10.27539 -10.09834 -9.80338 -9.55903 -9.48115 -9.22172 -9.01350 -8.42160 -8.35632 -8.05814 -7.63285 -5.97461 -3.97454 0.55528 0.71312 2.27472 2.32412 2.86814 3.29942 3.35368 3.41541 3.42630 3.44384 3.45683 3.83488 4.13455 4.33720 4.48869 4.54008 4.73092 5.03837 5.24390 5.25082 5.36111 5.39243 5.46165 5.49788 5.65357 5.67482 5.71273 5.82515 6.01278 6.02737 6.10931 6.22996 6.33203 6.39925 6.49834 6.61488 6.75041 6.88477 7.01999 7.29921 7.40913 7.48816 7.72539 7.77598 7.82384 7.92616 8.02201 8.33313 8.80345 9.02875 9.65207 11.12649 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003662 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.623383 B = 7644.954659 C = 9219.195388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.495 4.495 8 H 0.052 0.948 9 C 0.079 3.921 10 H 0.073 0.927 11 C -0.117 4.117 12 C 0.541 3.459 13 O -0.479 6.479 14 N -0.633 5.633 15 C 0.158 3.842 16 C -0.208 4.208 17 C 0.171 3.829 18 N -0.517 5.517 19 C 0.295 3.705 20 N -0.504 5.504 21 C 0.164 3.836 22 C 0.157 3.843 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.155 4.155 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.259 0.741 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.172 0.828 35 H 0.202 0.798 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -12.480 -6.631 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.060 3.940 10 H 0.091 0.909 11 C -0.157 4.157 12 C 0.331 3.669 13 O -0.348 6.348 14 N -0.374 5.374 15 C 0.034 3.966 16 C -0.213 4.213 17 C 0.005 3.995 18 N -0.230 5.230 19 C 0.007 3.993 20 N -0.218 5.218 21 C 0.017 3.983 22 C 0.032 3.968 23 C -0.022 4.022 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.218 0.782 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.844 -12.470 -6.932 15.823 hybrid contribution 0.138 1.663 0.193 1.680 sum 6.982 -10.807 -6.738 14.524 Atomic orbital electron populations 1.69915 1.05943 1.26398 1.49418 1.24803 0.94648 0.98865 0.94079 0.86638 0.80182 0.84354 0.77341 1.19954 1.21002 1.21324 1.20724 0.92498 0.89553 1.50479 0.93018 1.17865 0.97510 0.91378 0.87260 0.90891 1.21840 1.02662 1.00220 0.90946 1.20708 0.76407 0.83490 0.86318 1.90805 1.45500 1.20784 1.77720 1.48451 1.55502 1.22134 1.11358 1.19932 0.98223 0.95118 0.83367 1.22149 1.02051 1.00018 0.97042 1.22621 0.89049 0.93768 0.94039 1.68541 1.15668 1.03181 1.35595 1.24995 0.93864 0.97082 0.83313 1.67659 1.10067 1.22239 1.21843 1.21834 0.91012 0.89139 0.96291 1.20030 0.96826 0.87270 0.92656 1.20685 0.91991 0.90576 0.98948 1.20944 0.99378 0.99547 0.93455 1.20977 0.96082 1.01218 0.96680 1.20801 0.93347 1.04164 0.98991 1.20986 0.97995 1.00952 0.94680 1.21083 0.97063 0.99300 0.96199 0.93119 0.91262 0.90155 0.89527 0.89591 0.81077 0.78197 0.88434 0.88431 0.86895 0.87652 0.87801 0.87631 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 12.87 55.43 0.71 -24.60 16 2 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.50 -12.89 6.37 -34.44 -0.22 -13.11 16 8 H 0.05 1.35 7.82 -52.48 -0.41 0.93 16 9 C 0.08 1.81 1.67 -92.92 -0.16 1.66 16 10 H 0.07 1.93 6.98 -51.93 -0.36 1.57 16 11 C -0.12 -2.13 4.20 -27.88 -0.12 -2.25 16 12 C 0.54 10.28 7.62 -10.99 -0.08 10.19 16 13 O -0.48 -11.42 15.36 5.55 0.09 -11.33 16 14 N -0.63 -9.33 3.34 -176.28 -0.59 -9.92 16 15 C 0.16 2.00 6.90 -5.18 -0.04 1.96 16 16 C -0.21 -2.31 6.28 -104.62 -0.66 -2.97 16 17 C 0.17 1.66 11.31 -17.21 -0.19 1.46 16 18 N -0.52 -5.39 10.44 -14.58 -0.15 -5.54 16 19 C 0.29 2.88 12.28 -92.13 -1.13 1.75 16 20 N -0.50 -5.78 10.45 -10.89 -0.11 -5.89 16 21 C 0.16 1.93 7.46 -82.39 -0.61 1.32 16 22 C 0.16 1.83 6.54 -5.13 -0.03 1.80 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 24 C -0.12 -2.25 8.86 -39.58 -0.35 -2.60 16 25 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 26 C -0.15 -2.64 10.05 -39.59 -0.40 -3.03 16 27 C -0.13 -2.31 10.05 -39.59 -0.40 -2.71 16 28 C -0.12 -2.43 9.67 -39.59 -0.38 -2.81 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.35 7.78 -51.93 -0.40 0.95 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.11 2.12 7.76 -52.49 -0.41 1.71 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.10 1.48 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 2.35 7.95 -52.48 -0.42 1.94 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -32.61 360.44 -10.78 -43.39 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.36 Total: 2.52 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -5.77 Total: -10.90 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.14 Total: -45.95 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.61 -10.78 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565216402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.971 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds