Wall clock time and date at job start Tue Mar 31 2020 13:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47447 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46906 * 300.00056 * 3 2 1 6 6 H 1.48508 * 109.47295 * 59.99980 * 3 2 1 7 7 C 1.37877 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99893 * 186.11381 * 7 2 1 9 9 C 1.50696 * 120.00022 * 6.12635 * 7 2 1 10 10 H 1.08995 * 109.47480 * 25.83838 * 9 7 2 11 11 C 1.53005 * 109.47442 * 145.83905 * 9 7 2 12 12 C 1.50692 * 109.47154 * 294.99922 * 11 9 7 13 13 O 1.21288 * 120.00105 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00214 * 180.02562 * 12 11 9 15 15 C 1.46723 * 126.55866 * 180.02562 * 14 12 11 16 16 C 1.50474 * 107.64929 * 179.97438 * 15 14 12 17 17 C 1.38516 * 132.35658 * 179.97438 * 16 15 14 18 18 N 1.32392 * 118.91828 * 180.02562 * 17 16 15 19 19 C 1.31809 * 120.79619 * 359.97438 * 18 17 16 20 20 N 1.31812 * 121.84158 * 359.97438 * 19 18 17 21 21 C 1.32393 * 120.69229 * 0.02562 * 20 19 18 22 22 C 1.46710 * 126.55770 * 0.24823 * 14 12 11 23 23 C 1.50709 * 109.47210 * 265.83669 * 9 7 2 24 24 C 1.38236 * 119.99520 * 303.47441 * 23 9 7 25 25 C 1.38238 * 119.99161 * 179.78357 * 24 23 9 26 26 C 1.38229 * 120.00272 * 0.43914 * 25 24 23 27 27 C 1.38236 * 120.00229 * 359.81142 * 26 25 24 28 28 C 1.38230 * 119.99579 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46861 * 174.99367 * 11 9 7 31 31 H 1.09001 * 109.46947 * 54.99666 * 11 9 7 32 32 H 1.08999 * 109.82503 * 60.46585 * 15 14 12 33 33 H 1.09006 * 109.88549 * 299.56317 * 15 14 12 34 34 H 1.07998 * 120.53863 * 0.05918 * 17 16 15 35 35 H 1.07992 * 119.08105 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.88852 * 60.53163 * 22 14 12 37 37 H 1.08997 * 109.72810 * 299.62870 * 22 14 12 38 38 H 1.08000 * 120.00458 * 359.97438 * 24 23 9 39 39 H 1.08005 * 119.99793 * 180.27162 * 25 24 23 40 40 H 1.08005 * 120.00060 * 179.83748 * 26 25 24 41 41 H 1.08001 * 120.00169 * 179.97438 * 27 26 25 42 42 H 1.08009 * 119.99800 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0799 -1.1967 0.1002 9 6 1.2574 -2.4954 -0.1382 10 1 0.3200 -2.3218 -0.6665 11 6 2.1101 -3.4916 -0.9265 12 6 2.2982 -2.9880 -2.3343 13 8 1.7990 -1.9361 -2.6739 14 7 3.0204 -3.7070 -3.2164 15 6 3.2943 -3.3551 -4.6142 16 6 4.1380 -4.4526 -5.2041 17 6 4.6788 -4.6384 -6.4657 18 7 5.3950 -5.7266 -6.7013 19 6 5.5939 -6.6218 -5.7544 20 7 5.0947 -6.4755 -4.5433 21 6 4.3684 -5.4122 -4.2356 22 6 3.6791 -4.9933 -2.9639 23 6 0.9664 -3.0560 1.2302 24 6 2.0019 -3.2906 2.1154 25 6 1.7345 -3.8006 3.3722 26 6 0.4328 -4.0844 3.7403 27 6 -0.6022 -3.8546 2.8532 28 6 -0.3353 -3.3405 1.5981 29 1 -0.4850 0.8400 -0.0004 30 1 1.6091 -4.4593 -0.9507 31 1 3.0825 -3.5978 -0.4457 32 1 3.8350 -2.4097 -4.6583 33 1 2.3579 -3.2713 -5.1659 34 1 4.5193 -3.9072 -7.2442 35 1 6.1823 -7.4995 -5.9771 36 1 2.9376 -5.7403 -2.6807 37 1 4.4139 -4.8802 -2.1669 38 1 3.0194 -3.0726 1.8263 39 1 2.5431 -3.9798 4.0654 40 1 0.2242 -4.4853 4.7213 41 1 -1.6193 -4.0768 3.1407 42 1 -1.1439 -3.1614 0.9048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565216402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:32 Heat of formation + Delta-G solvation = 37.321807 kcal Electronic energy + Delta-G solvation = -26215.810284 eV Core-core repulsion = 22546.510006 eV Total energy + Delta-G solvation = -3669.300279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.63241 -40.72745 -39.74611 -37.98776 -35.78928 -34.81284 -33.54717 -32.91124 -31.47469 -30.47466 -29.67994 -28.12509 -26.81289 -24.55434 -24.01153 -23.49795 -23.07341 -21.47509 -20.41662 -18.81955 -18.49207 -18.01716 -17.65895 -17.39909 -17.05058 -16.71129 -16.34934 -15.88788 -15.65324 -15.39641 -15.09063 -14.69243 -14.63422 -14.29276 -14.18258 -14.14662 -13.97222 -13.65136 -13.50664 -13.40644 -13.13508 -12.86687 -12.53610 -12.44425 -12.04321 -11.80523 -11.74270 -11.67944 -11.31688 -10.95902 -10.79072 -10.74370 -10.41380 -10.33080 -9.56418 -9.51512 -9.17249 -8.03825 -6.06156 -0.26896 -0.09388 0.80587 0.86133 1.36033 1.39891 1.46874 1.70790 1.82489 2.46797 2.55084 2.61416 3.02892 3.20550 3.31702 3.37624 3.50633 3.67867 3.94873 4.26663 4.31972 4.37751 4.38976 4.40829 4.42382 4.47434 4.52055 4.56805 4.66052 4.73332 4.74785 4.94608 4.99301 5.11059 5.25894 5.29189 5.40263 5.54530 5.65608 5.79908 5.80269 5.86569 5.96928 6.18702 6.39968 6.45987 6.48919 6.94971 7.02144 7.35577 7.57343 9.06011 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003662 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.623383 B = 7644.954659 C = 9219.195388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.485 4.485 8 H 0.048 0.952 9 C 0.081 3.919 10 H 0.026 0.974 11 C -0.109 4.109 12 C 0.542 3.458 13 O -0.541 6.541 14 N -0.629 5.629 15 C 0.158 3.842 16 C -0.216 4.216 17 C 0.179 3.821 18 N -0.527 5.527 19 C 0.297 3.703 20 N -0.517 5.517 21 C 0.157 3.843 22 C 0.154 3.846 23 C -0.044 4.044 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.253 0.747 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.200 0.800 35 H 0.235 0.765 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -14.763 -5.705 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.062 3.938 10 H 0.045 0.955 11 C -0.149 4.149 12 C 0.332 3.668 13 O -0.415 6.415 14 N -0.367 5.367 15 C 0.034 3.966 16 C -0.221 4.221 17 C 0.014 3.986 18 N -0.240 5.240 19 C 0.010 3.990 20 N -0.232 5.232 21 C 0.010 3.990 22 C 0.031 3.969 23 C -0.045 4.045 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.166 4.166 27 C -0.147 4.147 28 C -0.161 4.161 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.217 0.783 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.865 -14.809 -6.014 18.278 hybrid contribution -0.417 2.200 -0.127 2.243 sum 8.448 -12.609 -6.142 16.373 Atomic orbital electron populations 1.70048 1.07092 1.26317 1.52111 1.25446 0.95262 1.01605 0.94985 0.85903 0.79619 0.81602 0.76868 1.19005 1.21890 1.20959 1.21020 0.92357 0.90938 1.48025 0.93328 1.17650 0.95747 0.91705 0.88674 0.95534 1.21696 1.02974 0.99965 0.90245 1.20710 0.76171 0.82917 0.86970 1.90782 1.48329 1.23526 1.78887 1.48185 1.54051 1.22776 1.11735 1.19943 0.98624 0.95744 0.82317 1.21986 1.02832 0.99431 0.97809 1.23084 0.87622 0.93911 0.94011 1.68665 1.16043 1.03518 1.35784 1.25722 0.93005 0.97667 0.82566 1.67725 1.10609 1.22131 1.22737 1.21805 0.91350 0.89618 0.96238 1.20194 0.97468 0.85907 0.93374 1.20520 0.93063 0.92568 0.98336 1.21045 0.98948 1.00185 0.94273 1.21369 0.97501 0.99494 0.96096 1.21257 0.92676 1.02544 1.00112 1.21280 0.99915 0.99911 0.93602 1.21104 0.96423 1.01075 0.97507 0.93765 0.88643 0.88196 0.90026 0.89676 0.78318 0.74945 0.86807 0.87113 0.86503 0.84218 0.84023 0.85164 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 12.87 21.45 0.28 -55.18 16 2 C 0.03 1.48 5.45 84.66 0.46 1.94 16 3 Si 0.93 46.09 29.54 68.60 2.03 48.11 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.49 -26.02 6.37 25.60 0.16 -25.86 16 8 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 9 C 0.08 3.88 1.67 -12.28 -0.02 3.86 16 10 H 0.03 1.50 6.98 -2.39 -0.02 1.48 16 11 C -0.11 -4.01 4.20 29.85 0.13 -3.88 16 12 C 0.54 21.11 7.62 87.65 0.67 21.78 16 13 O -0.54 -27.17 15.36 -3.05 -0.05 -27.22 16 14 N -0.63 -18.45 3.34 -830.00 -2.77 -21.22 16 15 C 0.16 3.99 6.90 85.52 0.59 4.58 16 16 C -0.22 -4.52 6.28 -19.86 -0.12 -4.65 16 17 C 0.18 3.11 11.31 84.67 0.96 4.07 16 18 N -0.53 -9.70 10.44 -200.06 -2.09 -11.79 16 19 C 0.30 5.03 12.28 180.87 2.22 7.25 16 20 N -0.52 -10.73 10.45 -188.38 -1.97 -12.70 16 21 C 0.16 3.42 7.46 42.45 0.32 3.74 16 22 C 0.15 3.37 6.54 85.56 0.56 3.93 16 23 C -0.04 -1.92 4.77 -19.86 -0.09 -2.01 16 24 C -0.13 -4.76 8.86 22.27 0.20 -4.56 16 25 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 26 C -0.15 -4.50 10.05 22.27 0.22 -4.27 16 27 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 28 C -0.14 -5.98 9.67 22.27 0.22 -5.76 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 3.25 7.78 -2.39 -0.02 3.24 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.12 4.21 7.76 -2.91 -0.02 4.18 16 39 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.09 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -74.29 360.44 3.36 -70.93 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.03 Total: 16.91 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 6.91 Total: -7.84 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -6.55 Total: -100.89 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.29 3.36 -70.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565216402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.252 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds