Wall clock time and date at job start Tue Mar 31 2020 13:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47258 * 95.27187 * 3 2 1 5 5 H 1.48507 * 109.46974 * 215.26976 * 3 2 1 6 6 H 1.48497 * 109.47339 * 335.26605 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00230 * 355.02213 * 7 2 1 9 9 C 1.50702 * 119.99676 * 175.01189 * 7 2 1 10 10 H 1.08998 * 109.47611 * 334.87867 * 9 7 2 11 11 C 1.53002 * 109.46832 * 214.87778 * 9 7 2 12 12 C 1.50690 * 109.47410 * 65.00347 * 11 9 7 13 13 O 1.21283 * 120.00086 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00063 * 179.97438 * 12 11 9 15 15 C 1.46733 * 126.55953 * 179.97438 * 14 12 11 16 16 C 1.50459 * 107.65065 * 180.02562 * 15 14 12 17 17 C 1.38516 * 132.35670 * 180.02562 * 16 15 14 18 18 N 1.32393 * 118.92859 * 179.97438 * 17 16 15 19 19 C 1.31820 * 120.78381 * 359.97438 * 18 17 16 20 20 N 1.31798 * 121.84727 * 0.02562 * 19 18 17 21 21 C 1.32399 * 120.69358 * 359.97438 * 20 19 18 22 22 C 1.46703 * 126.56229 * 359.68612 * 14 12 11 23 23 C 1.50705 * 109.46922 * 94.88090 * 9 7 2 24 24 C 1.38235 * 119.99935 * 54.76844 * 23 9 7 25 25 C 1.38232 * 119.99505 * 179.81185 * 24 23 9 26 26 C 1.38232 * 120.00145 * 0.39650 * 25 24 23 27 27 C 1.38233 * 120.00399 * 359.85298 * 26 25 24 28 28 C 1.38235 * 119.99615 * 235.03821 * 23 9 7 29 29 H 0.96996 * 120.00151 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47076 * 185.00332 * 11 9 7 31 31 H 1.09001 * 109.47326 * 304.99640 * 11 9 7 32 32 H 1.09002 * 109.82076 * 299.53484 * 15 14 12 33 33 H 1.09001 * 109.81793 * 60.38961 * 15 14 12 34 34 H 1.08002 * 120.53997 * 359.95586 * 17 16 15 35 35 H 1.07998 * 119.06856 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.81406 * 299.55461 * 22 14 12 37 37 H 1.09001 * 109.80996 * 60.45344 * 22 14 12 38 38 H 1.07993 * 120.00090 * 359.97438 * 24 23 9 39 39 H 1.07999 * 119.99868 * 180.22955 * 25 24 23 40 40 H 1.08005 * 120.00087 * 179.83205 * 26 25 24 41 41 H 1.07996 * 120.00472 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.00114 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6081 1.9822 1.3941 5 1 3.4866 1.4749 -0.8085 6 1 1.3954 2.6823 -0.5858 7 6 2.0046 -1.1941 0.0005 8 1 1.4676 -2.1276 0.0821 9 6 3.5073 -1.1965 -0.1129 10 1 3.8352 -0.2867 -0.6158 11 6 3.9557 -2.4158 -0.9211 12 6 3.4494 -2.2951 -2.3353 13 8 2.7940 -1.3291 -2.6643 14 7 3.7249 -3.2605 -3.2344 15 6 3.3067 -3.2904 -4.6406 16 6 3.8441 -4.5570 -5.2496 17 6 3.7553 -5.0900 -6.5250 18 7 4.3424 -6.2497 -6.7767 19 6 5.0024 -6.8907 -5.8326 20 7 5.1063 -6.4119 -4.6091 21 6 4.5446 -5.2575 -4.2851 22 6 4.5052 -4.4798 -2.9961 23 6 4.1150 -1.2559 1.2649 24 6 3.7571 -2.2686 2.1350 25 6 4.3175 -2.3252 3.3974 26 6 5.2295 -1.3646 3.7925 27 6 5.5835 -0.3489 2.9243 28 6 5.0260 -0.2944 1.6604 29 1 -0.4850 0.8400 -0.0004 30 1 5.0446 -2.4667 -0.9281 31 1 3.5527 -3.3210 -0.4669 32 1 2.2185 -3.2835 -4.7028 33 1 3.7123 -2.4252 -5.1652 34 1 3.2157 -4.5683 -7.3015 35 1 5.4712 -7.8346 -6.0686 36 1 5.5175 -4.2166 -2.6895 37 1 4.0273 -5.0785 -2.2207 38 1 3.0417 -3.0170 1.8277 39 1 4.0407 -3.1186 4.0760 40 1 5.6653 -1.4073 4.7798 41 1 6.2957 0.4019 3.2331 42 1 5.3026 0.4990 0.9819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565216411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:36 Heat of formation + Delta-G solvation = 38.204713 kcal Electronic energy + Delta-G solvation = -26289.526817 eV Core-core repulsion = 22620.264823 eV Total energy + Delta-G solvation = -3669.261993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64508 -40.81602 -39.87394 -38.03457 -35.86542 -34.82077 -33.78469 -33.03137 -31.59094 -30.56733 -29.71897 -28.38512 -26.90079 -24.42726 -24.02256 -23.54957 -23.20187 -21.45955 -20.38857 -19.04583 -18.83217 -18.05474 -17.73380 -17.46025 -17.13043 -16.71591 -16.36765 -15.97846 -15.67401 -15.39179 -15.11912 -14.75233 -14.63524 -14.61124 -14.23255 -14.19619 -14.09470 -13.85793 -13.67232 -13.54656 -13.23908 -12.91258 -12.75716 -12.08582 -12.02086 -11.87619 -11.82610 -11.74828 -11.48244 -11.01201 -10.87296 -10.76268 -10.57985 -10.34696 -9.61791 -9.58959 -9.30444 -8.21569 -6.18193 -0.27643 -0.10108 0.68768 0.73537 1.31395 1.34321 1.39685 1.66781 1.78180 2.40034 2.53402 2.60723 3.01773 3.08857 3.21951 3.31667 3.49555 3.66433 3.87767 4.12435 4.28434 4.30666 4.31750 4.37258 4.38955 4.45325 4.48076 4.49356 4.52465 4.63760 4.72464 4.83948 4.87224 4.98957 5.16817 5.22405 5.27309 5.38628 5.41694 5.69518 5.77786 5.79340 5.83247 6.02927 6.31890 6.36297 6.41618 6.81252 6.94221 7.29081 7.45569 8.95668 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.003605 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.562294 B = 7764.441902 C = 9076.463906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.027 3.973 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.248 1.248 6 H -0.300 1.300 7 C -0.465 4.465 8 H 0.037 0.963 9 C 0.047 3.953 10 H 0.040 0.960 11 C -0.104 4.104 12 C 0.540 3.460 13 O -0.545 6.545 14 N -0.629 5.629 15 C 0.157 3.843 16 C -0.216 4.216 17 C 0.179 3.821 18 N -0.527 5.527 19 C 0.297 3.703 20 N -0.517 5.517 21 C 0.157 3.843 22 C 0.154 3.846 23 C -0.063 4.063 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.156 4.156 29 H 0.258 0.742 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.235 0.765 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.040 -11.566 -5.550 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.170 4.170 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.173 1.173 6 H -0.227 1.227 7 C -0.502 4.502 8 H 0.055 0.945 9 C 0.028 3.972 10 H 0.058 0.942 11 C -0.144 4.144 12 C 0.331 3.669 13 O -0.419 6.419 14 N -0.366 5.366 15 C 0.034 3.966 16 C -0.221 4.221 17 C 0.014 3.986 18 N -0.240 5.240 19 C 0.011 3.989 20 N -0.232 5.232 21 C 0.010 3.990 22 C 0.030 3.970 23 C -0.064 4.064 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.142 4.142 28 C -0.175 4.175 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.251 0.749 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.945 -11.715 -5.864 19.874 hybrid contribution -0.985 1.759 -0.069 2.017 sum 13.960 -9.956 -5.933 18.144 Atomic orbital electron populations 1.70025 1.07961 1.27149 1.54221 1.25569 0.94985 1.01998 0.94443 0.86192 0.79811 0.80615 0.78910 1.19130 1.17267 1.22660 1.20817 0.90028 0.92513 1.46882 0.94500 1.18181 0.94149 0.95386 0.89494 0.94195 1.21597 1.01884 1.01262 0.89673 1.20707 0.78877 0.80256 0.87054 1.90766 1.39062 1.32330 1.79784 1.48132 1.55409 1.22271 1.10808 1.19946 1.00100 0.94697 0.81905 1.21971 1.03008 0.99371 0.97734 1.23084 0.91670 0.89943 0.93930 1.68676 1.10430 1.08530 1.36352 1.25729 0.91175 0.99492 0.82552 1.67723 1.21136 1.11954 1.22339 1.21807 0.90499 0.90386 0.96333 1.20213 0.99011 0.84649 0.93094 1.20478 0.93627 0.94518 0.97760 1.21023 0.99234 0.98921 0.94375 1.21407 0.97208 0.99822 0.95795 1.21342 0.98985 0.95077 1.00397 1.21337 1.00308 0.99191 0.93334 1.21221 0.98927 0.99414 0.97891 0.93292 0.87290 0.88274 0.90391 0.89309 0.78346 0.74918 0.86303 0.87321 0.87044 0.84300 0.83651 0.84255 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 2 C 0.03 1.59 5.47 84.65 0.46 2.06 16 3 Si 0.92 47.29 27.15 68.60 1.86 49.15 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.25 -12.10 6.06 99.48 0.60 -11.50 16 6 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 7 C -0.46 -25.78 6.84 25.60 0.18 -25.60 16 8 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 9 C 0.05 2.10 1.21 -12.28 -0.01 2.08 16 10 H 0.04 1.92 4.70 -2.39 -0.01 1.91 16 11 C -0.10 -3.66 4.22 29.85 0.13 -3.54 16 12 C 0.54 20.69 7.62 87.65 0.67 21.36 16 13 O -0.54 -26.95 15.36 -3.04 -0.05 -26.99 16 14 N -0.63 -18.29 3.34 -830.02 -2.77 -21.06 16 15 C 0.16 4.01 6.90 85.51 0.59 4.60 16 16 C -0.22 -4.56 6.28 -19.87 -0.12 -4.68 16 17 C 0.18 3.15 11.31 84.67 0.96 4.11 16 18 N -0.53 -9.77 10.44 -200.05 -2.09 -11.85 16 19 C 0.30 5.04 12.28 180.88 2.22 7.26 16 20 N -0.52 -10.68 10.45 -188.37 -1.97 -12.65 16 21 C 0.16 3.41 7.46 42.45 0.32 3.72 16 22 C 0.15 3.30 6.54 85.56 0.56 3.86 16 23 C -0.06 -2.50 4.55 -19.86 -0.09 -2.59 16 24 C -0.12 -4.25 8.88 22.27 0.20 -4.05 16 25 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 26 C -0.14 -3.79 10.05 22.27 0.22 -3.56 16 27 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 28 C -0.16 -5.60 9.43 22.27 0.21 -5.39 16 29 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 30 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 31 H 0.10 3.22 7.90 -2.39 -0.02 3.20 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.12 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 4.12 7.82 -2.91 -0.02 4.10 16 39 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.11 3.81 7.95 -2.91 -0.02 3.79 16 Total: -1.00 -78.51 355.83 3.14 -75.37 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.93 Total: 16.63 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 6.93 Total: -7.24 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -6.53 Total: -106.92 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -26.99 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.86 Total: 49.15 kcal Total: -78.51 3.14 -75.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565216411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.574 kcal (2) G-P(sol) polarization free energy of solvation -78.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds