Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47060 * 270.00131 * 3 2 1 5 5 H 1.48502 * 109.46845 * 29.99925 * 3 2 1 6 6 H 1.48497 * 109.47118 * 149.99918 * 3 2 1 7 7 C 1.37877 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00722 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.53124 * 109.52444 * 175.00332 * 10 9 7 12 12 C 1.53031 * 109.27737 * 177.56008 * 11 10 9 13 13 N 1.46851 * 109.52326 * 300.81340 * 12 11 10 14 14 C 1.39853 * 111.00216 * 185.84046 * 13 12 11 15 15 C 1.38941 * 120.04247 * 295.79581 * 14 13 12 16 16 C 1.38169 * 120.08271 * 179.97438 * 15 14 13 17 17 C 1.38198 * 120.16575 * 0.02562 * 16 15 14 18 18 N 1.48025 * 119.95641 * 179.97438 * 17 16 15 19 19 O 1.21809 * 119.99690 * 6.23225 * 18 17 16 20 20 O 1.21802 * 120.00613 * 186.23649 * 18 17 16 21 21 C 1.38906 * 120.09192 * 359.97438 * 17 16 15 22 22 N 1.39848 * 120.04515 * 180.02562 * 21 17 16 23 23 C 1.38874 * 120.03868 * 115.51643 * 14 13 12 24 24 F 1.35099 * 120.08416 * 359.97438 * 23 14 13 25 25 C 1.46846 * 111.19366 * 61.74530 * 13 12 11 26 26 C 1.53036 * 109.52474 * 298.25748 * 25 13 12 27 27 H 0.97003 * 120.00634 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47088 * 59.99839 * 9 7 2 29 29 H 1.09007 * 109.47156 * 299.99757 * 9 7 2 30 30 H 1.08997 * 109.57734 * 54.84008 * 10 9 7 31 31 H 1.09004 * 109.50009 * 297.49490 * 11 10 9 32 32 H 1.08998 * 109.50527 * 57.61334 * 11 10 9 33 33 H 1.08996 * 109.47007 * 60.82915 * 12 11 10 34 34 H 1.09003 * 109.46474 * 180.80204 * 12 11 10 35 35 H 1.08001 * 119.96398 * 359.97438 * 15 14 13 36 36 H 1.07994 * 119.91472 * 179.97438 * 16 15 14 37 37 H 0.96999 * 119.99921 * 24.76169 * 22 21 17 38 38 H 0.97000 * 119.99727 * 204.75465 * 22 21 17 39 39 H 1.09007 * 109.46073 * 178.24472 * 25 13 12 40 40 H 1.09003 * 109.46539 * 58.28052 * 25 13 12 41 41 H 1.09001 * 109.50092 * 299.24040 * 26 25 13 42 42 H 1.08998 * 109.49977 * 179.12111 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4851 -4.9853 0.1252 12 6 2.4793 -6.1469 0.0634 13 7 3.2097 -6.1006 -1.2098 14 6 4.0324 -7.2220 -1.3568 15 6 5.0911 -7.4277 -0.4809 16 6 5.9040 -8.5356 -0.6250 17 6 5.6679 -9.4427 -1.6406 18 7 6.5421 -10.6277 -1.7912 19 8 7.3965 -10.8643 -0.9558 20 8 6.4072 -11.3662 -2.7503 21 6 4.6115 -9.2440 -2.5203 22 7 4.3732 -10.1628 -3.5473 23 6 3.7885 -8.1343 -2.3750 24 9 2.7563 -7.9408 -3.2248 25 6 3.9851 -4.8595 -1.3321 26 6 3.0358 -3.6593 -1.3119 27 1 -0.4851 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8898 30 1 2.9321 -3.5553 0.8391 31 1 0.9542 -5.0109 1.0768 32 1 0.7706 -5.0737 -0.6933 33 1 3.1850 -6.0655 0.8900 34 1 1.9398 -7.0911 0.1383 35 1 5.2789 -6.7208 0.3138 36 1 6.7264 -8.6926 0.0571 37 1 4.6738 -11.0805 -3.4564 38 1 3.9073 -9.8823 -4.3506 39 1 4.5392 -4.8685 -2.2708 40 1 4.6838 -4.7841 -0.4988 41 1 2.3458 -3.7269 -2.1530 42 1 3.6129 -2.7377 -1.3870 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565655470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = -39.286736 kcal Electronic energy + Delta-G solvation = -27255.219394 eV Core-core repulsion = 23151.827895 eV Total energy + Delta-G solvation = -4103.391499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.96557 -43.33525 -41.32629 -39.54847 -37.86766 -36.73038 -35.28478 -34.21567 -31.89121 -31.81285 -30.34733 -29.53103 -27.00158 -25.62679 -24.15062 -23.96373 -23.59151 -22.26022 -20.67548 -20.27593 -19.85752 -18.89732 -18.75384 -18.39833 -18.30686 -17.51514 -17.01792 -16.69167 -16.52210 -16.43379 -15.82828 -15.52331 -15.13466 -14.75791 -14.45143 -14.37450 -14.12828 -13.79148 -13.73276 -13.41451 -13.21438 -13.02398 -12.75005 -12.67085 -12.52324 -12.36191 -12.30321 -12.18907 -12.09018 -11.85108 -11.67798 -11.27251 -10.93092 -10.74957 -10.50826 -10.32438 -9.63484 -9.16213 -8.15565 -6.24772 -1.29100 -0.15037 0.12420 0.29226 1.41758 1.41949 1.52562 1.99680 2.15146 2.43105 2.63875 2.84763 3.18296 3.35597 3.57423 3.68070 3.87132 4.01356 4.01822 4.13112 4.31310 4.46945 4.51435 4.54175 4.66956 4.67388 4.80256 4.86639 4.91003 4.98672 5.00646 5.16361 5.31180 5.38051 5.41532 5.46881 5.59154 5.79556 5.88035 5.89732 5.92616 6.11568 6.31311 6.42281 6.55221 6.92619 7.43962 8.96328 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.002528 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.171802 B =11071.328316 C =11416.487680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.074 4.074 11 C -0.108 4.108 12 C 0.072 3.928 13 N -0.521 5.521 14 C 0.160 3.840 15 C -0.165 4.165 16 C 0.000 4.000 17 C -0.116 4.116 18 N 0.052 4.948 19 O -0.177 6.177 20 O -0.197 6.197 21 C 0.259 3.741 22 N -0.839 5.839 23 C 0.032 3.968 24 F -0.124 7.124 25 C 0.070 3.930 26 C -0.095 4.095 27 H 0.261 0.739 28 H -0.015 1.015 29 H -0.013 1.013 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.421 0.579 38 H 0.417 0.583 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 -20.411 -2.853 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.564 4.564 8 H 0.083 0.917 9 C -0.005 4.005 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.053 4.053 13 N -0.243 5.243 14 C 0.063 3.937 15 C -0.188 4.188 16 C -0.020 4.020 17 C -0.207 4.207 18 N 0.561 4.439 19 O -0.389 6.389 20 O -0.401 6.401 21 C 0.144 3.856 22 N -0.388 5.388 23 C 0.007 3.993 24 F -0.102 7.102 25 C -0.055 4.055 26 C -0.133 4.133 27 H 0.069 0.931 28 H 0.003 0.997 29 H 0.005 0.995 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.190 0.810 36 H 0.197 0.803 37 H 0.260 0.740 38 H 0.249 0.751 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.042 -19.826 -3.233 22.923 hybrid contribution 0.148 0.693 -0.109 0.717 sum 11.190 -19.133 -3.343 22.416 Atomic orbital electron populations 1.70102 1.07848 1.27459 1.52400 1.25947 0.95628 1.03214 0.95268 0.85553 0.78862 0.78991 0.78300 1.20117 1.21308 1.18416 1.21679 0.93545 0.91971 1.49211 0.91696 1.19011 0.94081 0.93120 0.94253 1.21097 0.96996 0.93920 0.97221 1.21612 0.97700 0.93592 1.01638 1.22164 0.96140 0.99275 0.87771 1.59539 1.27367 1.00412 1.37029 1.19153 0.91841 0.90678 0.92019 1.21600 0.95665 0.99388 1.02116 1.20990 0.98426 0.89524 0.93096 1.20529 0.98064 0.93951 1.08191 1.43446 1.00114 1.01309 0.99076 1.94542 1.28751 1.78255 1.37372 1.94311 1.76039 1.46713 1.23020 1.17198 0.89543 0.89878 0.88941 1.43118 1.64836 1.12541 1.18273 1.16857 0.89893 0.97788 0.94792 1.91510 1.55323 1.94909 1.68481 1.22207 0.94474 0.86675 1.02152 1.21441 0.97860 0.96634 0.97380 0.93074 0.99703 0.99483 0.92088 0.91129 0.92983 0.91915 0.89775 0.80965 0.80348 0.73991 0.75077 0.90046 0.91984 0.93555 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.53 -28.41 8.44 25.60 0.22 -28.19 16 8 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 9 C 0.03 1.63 4.45 29.85 0.13 1.76 16 10 C -0.07 -2.71 2.20 -10.71 -0.02 -2.73 16 11 C -0.11 -3.28 5.38 30.65 0.16 -3.12 16 12 C 0.07 1.63 5.17 86.32 0.45 2.07 16 13 N -0.52 -12.19 4.46 -695.21 -3.10 -15.29 16 14 C 0.16 3.09 4.69 38.18 0.18 3.27 16 15 C -0.17 -2.33 8.70 22.42 0.20 -2.13 16 16 C 0.00 0.00 9.55 22.24 0.21 0.21 16 17 C -0.12 -2.08 6.86 36.52 0.25 -1.83 16 18 N 0.05 1.10 4.45 -46.10 -0.21 0.89 16 19 O -0.18 -3.97 18.46 18.87 0.35 -3.62 16 20 O -0.20 -4.27 15.86 18.88 0.30 -3.97 16 21 C 0.26 4.65 6.74 38.18 0.26 4.91 16 22 N -0.84 -12.34 8.43 -51.26 -0.43 -12.77 16 23 C 0.03 0.65 7.31 22.58 0.17 0.82 16 24 F -0.12 -2.92 16.62 44.97 0.75 -2.17 16 25 C 0.07 1.69 5.12 86.33 0.44 2.14 16 26 C -0.10 -3.17 5.15 30.65 0.16 -3.01 16 27 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 28 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.19 7.55 -2.39 -0.02 1.17 16 34 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.17 1.78 7.13 -2.91 -0.02 1.76 16 36 H 0.18 1.72 7.62 -2.91 -0.02 1.69 16 37 H 0.42 5.98 6.08 -92.71 -0.56 5.41 16 38 H 0.42 4.86 8.58 -92.71 -0.80 4.06 16 39 H 0.08 1.82 8.11 -2.38 -0.02 1.81 16 40 H 0.06 1.26 7.33 -2.39 -0.02 1.24 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.36 7.05 -2.39 -0.02 2.34 16 Total: -1.00 -65.81 349.45 2.95 -62.86 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -0.28 Total: 10.65 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.26 Total: -25.58 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -3.45 Total: -83.44 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.65 Total: -7.60 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.75 Total: -2.17 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -65.81 2.95 -62.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565655470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.576 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds