Wall clock time and date at job start Tue Mar 31 2020 13:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99828 * 2 1 4 4 H 1.48497 * 109.47400 * 271.33132 * 3 2 1 5 5 H 1.48504 * 109.47343 * 31.33160 * 3 2 1 6 6 H 1.48501 * 109.47463 * 151.33127 * 3 2 1 7 7 C 1.37877 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 358.84857 * 7 2 1 9 9 C 1.50695 * 119.99773 * 178.84480 * 7 2 1 10 10 C 1.53005 * 115.55024 * 87.46434 * 9 7 2 11 11 N 1.46505 * 109.46953 * 56.04340 * 10 9 7 12 12 C 1.34773 * 120.00143 * 185.06574 * 11 10 9 13 13 O 1.21572 * 120.00021 * 4.99140 * 12 11 10 14 14 C 1.47695 * 120.00282 * 184.98248 * 12 11 10 15 15 C 1.40091 * 120.85738 * 174.57011 * 14 12 11 16 16 N 1.31952 * 119.01673 * 180.27822 * 15 14 12 17 17 C 1.32725 * 120.88681 * 359.48091 * 16 15 14 18 18 C 1.48179 * 119.05173 * 180.29010 * 17 16 15 19 19 C 1.39452 * 120.13524 * 179.97438 * 18 17 16 20 20 C 1.37982 * 119.86429 * 179.70324 * 19 18 17 21 21 C 1.38344 * 120.13598 * 0.57120 * 20 19 18 22 22 C 1.38343 * 120.26453 * 359.73002 * 21 20 19 23 23 C 1.37996 * 120.13196 * 359.96646 * 22 21 20 24 24 N 1.32725 * 121.89833 * 0.53311 * 17 16 15 25 25 C 1.31943 * 120.89090 * 359.73872 * 24 17 16 26 26 C 1.53005 * 117.50130 * 233.13223 * 9 7 2 27 27 C 1.53001 * 117.49987 * 301.79496 * 9 7 2 28 28 H 0.97000 * 120.00657 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47113 * 296.05144 * 10 9 7 30 30 H 1.08996 * 109.47329 * 176.04367 * 10 9 7 31 31 H 0.97005 * 120.00121 * 5.06859 * 11 10 9 32 32 H 1.07999 * 120.49621 * 359.97438 * 15 14 12 33 33 H 1.07998 * 120.06511 * 0.02562 * 19 18 17 34 34 H 1.08006 * 119.93432 * 180.32227 * 20 19 18 35 35 H 1.07996 * 119.86796 * 179.74510 * 21 20 19 36 36 H 1.08000 * 119.93616 * 179.97438 * 22 21 20 37 37 H 1.07994 * 120.06577 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.48480 * 179.97438 * 25 24 17 39 39 H 1.08994 * 117.50062 * 215.00549 * 26 9 7 40 40 H 1.08996 * 117.49509 * 0.02884 * 26 9 7 41 41 H 1.08987 * 117.50018 * 359.97438 * 27 9 7 42 42 H 1.09001 * 117.49514 * 144.97924 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4684 2.0627 -1.3996 5 1 1.4609 2.6444 0.7280 6 1 3.5604 1.4323 0.6717 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1292 0.0197 9 6 3.5113 -1.1941 -0.0258 10 6 4.1951 -1.1186 1.3408 11 7 3.7243 -2.2202 2.1841 12 6 4.1144 -2.2975 3.4718 13 8 4.7824 -1.4063 3.9591 14 6 3.7303 -3.4648 4.2911 15 6 4.2184 -3.6193 5.5951 16 7 3.8560 -4.6791 6.2928 17 6 3.0334 -5.5848 5.7784 18 6 2.6479 -6.7559 6.6003 19 6 1.7846 -7.7209 6.0825 20 6 1.4342 -8.8124 6.8505 21 6 1.9282 -8.9445 8.1360 22 6 2.7801 -7.9873 8.6574 23 6 3.1427 -6.8945 7.8967 24 7 2.5497 -5.4741 4.5473 25 6 2.8687 -4.4462 3.7841 26 6 4.1988 -2.0198 -1.1151 27 6 4.1974 -0.4913 -1.1989 28 1 -0.4851 0.8400 -0.0004 29 1 3.9530 -0.1681 1.8162 30 1 5.2747 -1.1957 1.2117 31 1 3.1317 -2.8940 1.8156 32 1 4.8854 -2.8846 6.0213 33 1 1.3951 -7.6168 5.0806 34 1 0.7697 -9.5631 6.4487 35 1 1.6479 -9.7985 8.7347 36 1 3.1623 -8.0956 9.6617 37 1 3.8081 -6.1481 8.3047 38 1 2.4716 -4.3629 2.7832 39 1 5.1382 -2.5091 -0.8581 40 1 3.5613 -2.5625 -1.8129 41 1 3.5590 -0.0292 -1.9518 42 1 5.1358 0.0252 -0.9969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573591214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:35 Heat of formation + Delta-G solvation = 66.547019 kcal Electronic energy + Delta-G solvation = -25417.371547 eV Core-core repulsion = 21749.338569 eV Total energy + Delta-G solvation = -3668.032979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32495 -39.40070 -38.78520 -37.12490 -34.26885 -33.57353 -33.13523 -32.20965 -31.15973 -30.41413 -27.05397 -25.65429 -25.00671 -24.49345 -22.42625 -22.16475 -21.79264 -20.39079 -19.44682 -18.18191 -17.74495 -17.44840 -16.35648 -16.26293 -15.44392 -15.24877 -15.06284 -14.94782 -14.75866 -14.48713 -14.14766 -13.79400 -13.72612 -13.53140 -13.15012 -12.99423 -12.85553 -12.54958 -12.22606 -11.81682 -11.53898 -11.32737 -11.23160 -11.04530 -10.83610 -10.58867 -10.29159 -10.20244 -9.86011 -9.63430 -9.42943 -9.27610 -9.18881 -8.80722 -8.72550 -8.67485 -8.40943 -6.23384 -4.29360 -0.02765 0.93197 1.17564 1.27638 2.97320 3.23167 3.34420 3.35486 3.41091 3.50894 3.52361 3.90002 3.92253 4.33244 4.37743 4.67976 4.70481 4.74209 4.80070 4.82258 4.98106 5.01550 5.13199 5.22637 5.30636 5.58746 5.61479 5.65066 5.82251 5.91519 5.97078 6.00091 6.11227 6.22704 6.25250 6.30170 6.35340 6.38402 6.62418 6.64680 6.76707 6.83782 6.94779 7.00094 7.59145 7.80088 7.92744 8.31301 8.48470 8.75288 9.39449 10.87526 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.002599 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.463132 B =10772.431499 C =11142.361062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.495 4.495 8 H 0.079 0.921 9 C -0.018 4.018 10 C 0.153 3.847 11 N -0.689 5.689 12 C 0.560 3.440 13 O -0.546 6.546 14 C -0.236 4.236 15 C 0.209 3.791 16 N -0.517 5.517 17 C 0.370 3.630 18 C -0.051 4.051 19 C -0.067 4.067 20 C -0.133 4.133 21 C -0.099 4.099 22 C -0.134 4.134 23 C -0.068 4.068 24 N -0.513 5.513 25 C 0.191 3.809 26 C -0.179 4.179 27 C -0.192 4.192 28 H 0.266 0.734 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.404 0.596 32 H 0.183 0.817 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.180 0.820 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 -15.180 12.406 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.532 4.532 8 H 0.097 0.903 9 C -0.019 4.019 10 C 0.030 3.970 11 N -0.338 5.338 12 C 0.344 3.656 13 O -0.426 6.426 14 C -0.244 4.244 15 C 0.042 3.958 16 N -0.230 5.230 17 C 0.106 3.894 18 C -0.053 4.053 19 C -0.087 4.087 20 C -0.151 4.151 21 C -0.118 4.118 22 C -0.152 4.152 23 C -0.088 4.088 24 N -0.226 5.226 25 C 0.024 3.976 26 C -0.216 4.216 27 C -0.230 4.230 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.240 0.760 32 H 0.200 0.800 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.196 0.804 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.037 -15.181 13.237 21.026 hybrid contribution 0.225 1.545 -0.898 1.801 sum 6.262 -13.635 12.339 19.426 Atomic orbital electron populations 1.69876 1.06394 1.27399 1.49173 1.24969 0.94582 0.99198 0.93440 0.86870 0.80775 0.83281 0.78442 1.20369 1.22028 1.18036 1.20149 0.85938 0.94539 1.52555 0.90323 1.19616 0.95434 1.01007 0.85880 1.21227 0.95569 0.89222 0.90962 1.45744 1.48937 1.29287 1.09820 1.17686 0.80638 0.85176 0.82083 1.90760 1.40472 1.39402 1.71969 1.21955 1.04242 0.99513 0.98669 1.23441 0.91789 0.92140 0.88479 1.68435 1.13999 1.03264 1.37309 1.21502 0.87920 0.91982 0.87947 1.18100 1.00717 0.92862 0.93655 1.21402 0.94598 0.92210 1.00458 1.21145 1.01064 0.98261 0.94599 1.21366 0.96236 0.98629 0.95553 1.21129 0.99176 0.94634 1.00237 1.21370 0.97600 0.97407 0.92421 1.68363 1.24636 1.23940 1.05637 1.23589 0.88632 0.86300 0.99118 1.22888 1.01038 0.93042 1.04622 1.22941 1.01434 0.95019 1.03558 0.92379 0.91173 0.93459 0.75955 0.79960 0.84289 0.85406 0.85789 0.85492 0.84450 0.80351 0.90835 0.89312 0.89081 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.87 24.90 -169.99 -4.23 16.64 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -5.81 5.60 56.52 0.32 -5.49 16 7 C -0.49 -12.39 8.88 -34.44 -0.31 -12.70 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.68 16 9 C -0.02 -0.38 0.93 -155.66 -0.14 -0.52 16 10 C 0.15 3.04 5.34 -4.04 -0.02 3.01 16 11 N -0.69 -12.15 5.32 -61.30 -0.33 -12.48 16 12 C 0.56 9.73 7.77 -12.40 -0.10 9.63 16 13 O -0.55 -11.01 16.43 5.30 0.09 -10.92 16 14 C -0.24 -3.46 5.91 -104.65 -0.62 -4.08 16 15 C 0.21 2.87 10.87 -16.81 -0.18 2.69 16 16 N -0.52 -7.11 9.42 -10.82 -0.10 -7.21 16 17 C 0.37 5.09 7.55 -156.78 -1.18 3.91 16 18 C -0.05 -0.61 5.88 -104.91 -0.62 -1.23 16 19 C -0.07 -0.70 9.56 -39.22 -0.38 -1.08 16 20 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 21 C -0.10 -0.75 10.04 -39.50 -0.40 -1.15 16 22 C -0.13 -1.09 10.03 -39.63 -0.40 -1.49 16 23 C -0.07 -0.70 9.56 -39.22 -0.38 -1.07 16 24 N -0.51 -7.15 9.42 -10.83 -0.10 -7.25 16 25 C 0.19 2.60 10.80 -16.81 -0.18 2.41 16 26 C -0.18 -3.23 9.93 -26.69 -0.27 -3.50 16 27 C -0.19 -3.75 7.59 -26.69 -0.20 -3.95 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.07 1.55 6.45 -51.93 -0.33 1.22 16 30 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.40 6.52 6.32 -40.82 -0.26 6.27 16 32 H 0.18 2.24 7.75 -52.49 -0.41 1.83 16 33 H 0.14 1.44 7.50 -52.49 -0.39 1.05 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 1.36 7.50 -52.49 -0.39 0.96 16 38 H 0.18 2.09 6.54 -52.49 -0.34 1.74 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.09 1.88 7.20 -51.94 -0.37 1.51 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -30.73 357.74 -9.47 -40.20 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.10 Total: 9.10 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -5.86 Total: -8.51 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.24 Total: -51.89 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.23 Total: 16.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.73 -9.47 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573591214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.748 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds