Wall clock time and date at job start Tue Mar 31 2020 13:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99676 * 2 1 4 4 H 1.48502 * 109.46957 * 271.19488 * 3 2 1 5 5 H 1.48494 * 109.47266 * 31.19335 * 3 2 1 6 6 H 1.48505 * 109.46837 * 151.19553 * 3 2 1 7 7 C 1.37870 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 358.63552 * 7 2 1 9 9 C 1.50701 * 120.00249 * 178.63452 * 7 2 1 10 10 C 1.52999 * 115.55205 * 87.01203 * 9 7 2 11 11 N 1.46493 * 109.46974 * 64.67173 * 10 9 7 12 12 C 1.34780 * 120.00213 * 175.16729 * 11 10 9 13 13 O 1.21588 * 119.99550 * 5.00330 * 12 11 10 14 14 C 1.47601 * 120.00406 * 184.73015 * 12 11 10 15 15 C 1.39835 * 120.99981 * 325.22101 * 14 12 11 16 16 N 1.32163 * 118.99930 * 179.71690 * 15 14 12 17 17 C 1.31957 * 121.21611 * 0.57402 * 16 15 14 18 18 N 1.31648 * 122.24155 * 359.69491 * 17 16 15 19 19 C 1.33072 * 120.83722 * 0.02562 * 18 17 16 20 20 C 1.48092 * 120.64987 * 180.02562 * 19 18 17 21 21 C 1.39486 * 120.13807 * 134.31505 * 20 19 18 22 22 C 1.37977 * 119.86534 * 179.77123 * 21 20 19 23 23 C 1.38343 * 120.13225 * 0.50911 * 22 21 20 24 24 C 1.38350 * 120.27817 * 359.74749 * 23 22 21 25 25 C 1.37975 * 120.13091 * 359.97438 * 24 23 22 26 26 C 1.53001 * 117.49849 * 232.68511 * 9 7 2 27 27 C 1.52999 * 117.49516 * 301.34223 * 9 7 2 28 28 H 0.97005 * 120.00393 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46833 * 304.68005 * 10 9 7 30 30 H 1.08991 * 109.47323 * 184.67649 * 10 9 7 31 31 H 0.97003 * 120.00473 * 355.17430 * 11 10 9 32 32 H 1.07997 * 120.49903 * 359.97438 * 15 14 12 33 33 H 1.08003 * 118.87986 * 179.72824 * 17 16 15 34 34 H 1.08003 * 120.06395 * 0.02736 * 21 20 19 35 35 H 1.07996 * 119.93329 * 180.28005 * 22 21 20 36 36 H 1.08012 * 119.86268 * 179.76510 * 23 22 21 37 37 H 1.08000 * 119.93321 * 179.97438 * 24 23 22 38 38 H 1.08000 * 120.06974 * 180.02562 * 25 24 23 39 39 H 1.09003 * 117.49747 * 214.99932 * 26 9 7 40 40 H 1.08999 * 117.49936 * 0.02562 * 26 9 7 41 41 H 1.08998 * 117.50446 * 359.97438 * 27 9 7 42 42 H 1.09007 * 117.49894 * 144.97072 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4712 2.0611 -1.3998 5 1 1.4593 2.6453 0.7251 6 1 3.5591 1.4331 0.6746 7 6 2.0045 -1.1940 -0.0005 8 1 1.4648 -2.1291 0.0213 9 6 3.5112 -1.1941 -0.0316 10 6 4.1994 -1.1064 1.3320 11 7 3.8929 -2.3081 2.1118 12 6 4.4722 -2.4974 3.3140 13 8 5.1777 -1.6301 3.7920 14 6 4.2454 -3.7548 4.0528 15 6 3.0143 -4.4150 3.9901 16 7 2.8563 -5.5415 4.6630 17 6 3.8321 -6.0425 5.3966 18 7 5.0080 -5.4588 5.4945 19 6 5.2619 -4.3235 4.8483 20 6 6.5864 -3.6707 4.9609 21 6 7.2329 -3.1967 3.8195 22 6 8.4647 -2.5851 3.9315 23 6 9.0632 -2.4510 5.1715 24 6 8.4295 -2.9238 6.3068 25 6 7.1950 -3.5321 6.2084 26 6 4.1953 -2.0292 -1.1158 27 6 4.1934 -0.5016 -1.2131 28 1 -0.4851 0.8401 -0.0004 29 1 3.8396 -0.2261 1.8646 30 1 5.2775 -1.0302 1.1907 31 1 3.2730 -2.9676 1.7631 32 1 2.2062 -4.0127 3.3973 33 1 3.6604 -6.9632 5.9345 34 1 6.7684 -3.3045 2.8504 35 1 8.9642 -2.2137 3.0490 36 1 10.0293 -1.9749 5.2537 37 1 8.9021 -2.8165 7.2720 38 1 6.7010 -3.9004 7.0953 39 1 5.1357 -2.5162 -0.8576 40 1 3.5556 -2.5782 -1.8069 41 1 3.5525 -0.0463 -1.9681 42 1 5.1324 0.0169 -1.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576628709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:49 Heat of formation + Delta-G solvation = 70.019246 kcal Electronic energy + Delta-G solvation = -26613.984758 eV Core-core repulsion = 22946.102347 eV Total energy + Delta-G solvation = -3667.882412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38014 -39.19119 -38.81581 -37.12239 -34.40775 -33.60407 -32.68509 -32.20722 -30.95910 -30.31736 -27.12801 -25.67077 -24.92526 -24.52816 -22.46479 -21.83411 -21.75477 -20.47138 -19.41909 -18.03222 -17.75922 -17.40089 -16.46755 -16.30607 -15.53773 -15.27405 -15.09370 -14.94311 -14.55360 -14.32184 -14.14258 -13.80881 -13.49400 -13.44311 -13.20949 -12.89966 -12.74222 -12.51209 -12.16771 -11.71409 -11.43850 -11.26297 -11.23507 -10.89728 -10.87684 -10.60593 -10.29145 -10.05658 -9.75798 -9.58499 -9.45587 -9.29148 -8.94786 -8.76786 -8.69197 -8.60263 -8.43421 -6.23517 -4.29404 0.27250 0.65899 1.42019 1.50170 2.90975 3.22579 3.33369 3.34244 3.41240 3.58512 3.68521 3.82638 3.96448 4.30628 4.32673 4.69291 4.73868 4.89100 4.90182 4.95816 5.03622 5.05282 5.20080 5.35085 5.44625 5.55340 5.57662 5.83351 5.92047 5.97063 5.97338 6.07378 6.10610 6.33861 6.35842 6.39236 6.41084 6.45933 6.61957 6.72726 6.84673 6.89984 6.93178 6.99616 7.58850 7.82594 7.91082 8.31850 8.47413 8.75757 9.39256 10.87449 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.004086 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.873548 B = 6851.467670 C = 8041.878137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.495 4.495 8 H 0.079 0.921 9 C -0.017 4.017 10 C 0.156 3.844 11 N -0.692 5.692 12 C 0.554 3.446 13 O -0.528 6.528 14 C -0.221 4.221 15 C 0.185 3.815 16 N -0.522 5.522 17 C 0.308 3.692 18 N -0.516 5.516 19 C 0.264 3.736 20 C -0.050 4.050 21 C -0.056 4.056 22 C -0.122 4.122 23 C -0.103 4.103 24 C -0.131 4.131 25 C -0.074 4.074 26 C -0.178 4.178 27 C -0.191 4.191 28 H 0.266 0.734 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.405 0.595 32 H 0.181 0.819 33 H 0.202 0.798 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -8.783 8.993 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.097 0.903 9 C -0.019 4.019 10 C 0.033 3.967 11 N -0.341 5.341 12 C 0.337 3.663 13 O -0.406 6.406 14 C -0.229 4.229 15 C 0.019 3.981 16 N -0.235 5.235 17 C 0.021 3.979 18 N -0.229 5.229 19 C 0.118 3.882 20 C -0.051 4.051 21 C -0.075 4.075 22 C -0.140 4.140 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.093 4.093 26 C -0.215 4.215 27 C -0.229 4.229 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.240 0.760 32 H 0.198 0.802 33 H 0.218 0.782 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.783 -8.909 9.805 19.117 hybrid contribution -0.075 1.448 -0.711 1.615 sum 13.707 -7.461 9.094 18.063 Atomic orbital electron populations 1.69877 1.06388 1.27382 1.49214 1.24958 0.94563 0.99136 0.93481 0.86878 0.80746 0.83344 0.78501 1.20351 1.21990 1.18104 1.20167 0.85956 0.94546 1.52500 0.90320 1.19616 0.95428 1.00963 0.85858 1.21234 0.97165 0.86319 0.91968 1.45857 1.45419 1.24919 1.17955 1.17681 0.81172 0.85723 0.81691 1.90832 1.38908 1.43326 1.67509 1.21921 0.97498 0.99663 1.03779 1.23648 0.95022 0.88065 0.91355 1.68439 1.33844 1.12336 1.08907 1.25144 0.83366 0.98050 0.91335 1.68576 1.23115 1.09054 1.22205 1.20217 0.92562 0.88535 0.86869 1.18154 0.91441 1.00802 0.94675 1.21030 0.94327 0.94876 0.97246 1.20977 0.95432 0.99686 0.97896 1.21240 0.99694 0.98568 0.92620 1.21008 0.95382 0.99830 0.98659 1.21064 0.94775 0.97267 0.96203 1.22846 1.01002 0.92978 1.04679 1.22954 1.01381 0.95073 1.03473 0.92376 0.91443 0.93313 0.75951 0.80175 0.78198 0.86494 0.85733 0.85979 0.85787 0.85789 0.90940 0.89335 0.89084 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.96 55.43 0.77 -24.78 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 20.65 24.87 -169.99 -4.23 16.42 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -5.77 5.75 56.52 0.32 -5.44 16 7 C -0.49 -12.32 9.16 -34.44 -0.32 -12.64 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 9 C -0.02 -0.36 0.84 -155.66 -0.13 -0.49 16 10 C 0.16 3.05 5.13 -4.05 -0.02 3.03 16 11 N -0.69 -11.92 5.43 -61.33 -0.33 -12.25 16 12 C 0.55 9.46 5.88 -12.44 -0.07 9.38 16 13 O -0.53 -10.39 14.05 5.29 0.07 -10.31 16 14 C -0.22 -3.30 5.81 -104.42 -0.61 -3.91 16 15 C 0.19 2.50 10.63 -16.81 -0.18 2.32 16 16 N -0.52 -6.77 10.41 -14.30 -0.15 -6.92 16 17 C 0.31 3.56 12.26 -92.14 -1.13 2.43 16 18 N -0.52 -6.85 10.29 -10.84 -0.11 -6.96 16 19 C 0.26 3.86 6.40 -82.22 -0.53 3.34 16 20 C -0.05 -0.72 4.81 -104.92 -0.50 -1.22 16 21 C -0.06 -0.79 7.22 -39.21 -0.28 -1.07 16 22 C -0.12 -1.50 10.03 -39.64 -0.40 -1.90 16 23 C -0.10 -1.12 10.04 -39.50 -0.40 -1.52 16 24 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 25 C -0.07 -0.95 9.70 -39.21 -0.38 -1.33 16 26 C -0.18 -3.21 9.96 -26.69 -0.27 -3.48 16 27 C -0.19 -3.71 7.60 -26.70 -0.20 -3.91 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 29 H 0.07 1.48 6.66 -51.93 -0.35 1.13 16 30 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.41 6.49 7.43 -40.82 -0.30 6.19 16 32 H 0.18 2.19 7.58 -52.49 -0.40 1.79 16 33 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.12 1.70 6.94 -52.48 -0.36 1.33 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.09 1.87 7.26 -51.93 -0.38 1.50 16 42 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -30.54 355.01 -9.76 -40.30 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.23 Total: 9.86 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -5.91 Total: -10.71 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.18 Total: -50.91 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.23 Total: 16.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.54 -9.76 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576628709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.318 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds