Wall clock time and date at job start Tue Mar 31 2020 13:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99676 * 2 1 4 4 H 1.48502 * 109.46957 * 271.19488 * 3 2 1 5 5 H 1.48494 * 109.47266 * 31.19335 * 3 2 1 6 6 H 1.48505 * 109.46837 * 151.19553 * 3 2 1 7 7 C 1.37870 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 358.63552 * 7 2 1 9 9 C 1.50701 * 120.00249 * 178.63452 * 7 2 1 10 10 C 1.52999 * 115.55205 * 87.01203 * 9 7 2 11 11 N 1.46493 * 109.46974 * 64.67173 * 10 9 7 12 12 C 1.34780 * 120.00213 * 175.16729 * 11 10 9 13 13 O 1.21588 * 119.99550 * 5.00330 * 12 11 10 14 14 C 1.47601 * 120.00406 * 184.73015 * 12 11 10 15 15 C 1.39835 * 120.99981 * 325.22101 * 14 12 11 16 16 N 1.32163 * 118.99930 * 179.71690 * 15 14 12 17 17 C 1.31957 * 121.21611 * 0.57402 * 16 15 14 18 18 N 1.31648 * 122.24155 * 359.69491 * 17 16 15 19 19 C 1.33072 * 120.83722 * 0.02562 * 18 17 16 20 20 C 1.48092 * 120.64987 * 180.02562 * 19 18 17 21 21 C 1.39486 * 120.13807 * 134.31505 * 20 19 18 22 22 C 1.37977 * 119.86534 * 179.77123 * 21 20 19 23 23 C 1.38343 * 120.13225 * 0.50911 * 22 21 20 24 24 C 1.38350 * 120.27817 * 359.74749 * 23 22 21 25 25 C 1.37975 * 120.13091 * 359.97438 * 24 23 22 26 26 C 1.53001 * 117.49849 * 232.68511 * 9 7 2 27 27 C 1.52999 * 117.49516 * 301.34223 * 9 7 2 28 28 H 0.97005 * 120.00393 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46833 * 304.68005 * 10 9 7 30 30 H 1.08991 * 109.47323 * 184.67649 * 10 9 7 31 31 H 0.97003 * 120.00473 * 355.17430 * 11 10 9 32 32 H 1.07997 * 120.49903 * 359.97438 * 15 14 12 33 33 H 1.08003 * 118.87986 * 179.72824 * 17 16 15 34 34 H 1.08003 * 120.06395 * 0.02736 * 21 20 19 35 35 H 1.07996 * 119.93329 * 180.28005 * 22 21 20 36 36 H 1.08012 * 119.86268 * 179.76510 * 23 22 21 37 37 H 1.08000 * 119.93321 * 179.97438 * 24 23 22 38 38 H 1.08000 * 120.06974 * 180.02562 * 25 24 23 39 39 H 1.09003 * 117.49747 * 214.99932 * 26 9 7 40 40 H 1.08999 * 117.49936 * 0.02562 * 26 9 7 41 41 H 1.08998 * 117.50446 * 359.97438 * 27 9 7 42 42 H 1.09007 * 117.49894 * 144.97072 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4712 2.0611 -1.3998 5 1 1.4593 2.6453 0.7251 6 1 3.5591 1.4331 0.6746 7 6 2.0045 -1.1940 -0.0005 8 1 1.4648 -2.1291 0.0213 9 6 3.5112 -1.1941 -0.0316 10 6 4.1994 -1.1064 1.3320 11 7 3.8929 -2.3081 2.1118 12 6 4.4722 -2.4974 3.3140 13 8 5.1777 -1.6301 3.7920 14 6 4.2454 -3.7548 4.0528 15 6 3.0143 -4.4150 3.9901 16 7 2.8563 -5.5415 4.6630 17 6 3.8321 -6.0425 5.3966 18 7 5.0080 -5.4588 5.4945 19 6 5.2619 -4.3235 4.8483 20 6 6.5864 -3.6707 4.9609 21 6 7.2329 -3.1967 3.8195 22 6 8.4647 -2.5851 3.9315 23 6 9.0632 -2.4510 5.1715 24 6 8.4295 -2.9238 6.3068 25 6 7.1950 -3.5321 6.2084 26 6 4.1953 -2.0292 -1.1158 27 6 4.1934 -0.5016 -1.2131 28 1 -0.4851 0.8401 -0.0004 29 1 3.8396 -0.2261 1.8646 30 1 5.2775 -1.0302 1.1907 31 1 3.2730 -2.9676 1.7631 32 1 2.2062 -4.0127 3.3973 33 1 3.6604 -6.9632 5.9345 34 1 6.7684 -3.3045 2.8504 35 1 8.9642 -2.2137 3.0490 36 1 10.0293 -1.9749 5.2537 37 1 8.9021 -2.8165 7.2720 38 1 6.7010 -3.9004 7.0953 39 1 5.1357 -2.5162 -0.8576 40 1 3.5556 -2.5782 -1.8069 41 1 3.5525 -0.0463 -1.9681 42 1 5.1324 0.0169 -1.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576628709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:47 Heat of formation + Delta-G solvation = 51.881459 kcal Electronic energy + Delta-G solvation = -26614.771272 eV Core-core repulsion = 22946.102347 eV Total energy + Delta-G solvation = -3668.668925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.44762 -40.48015 -39.80711 -38.68816 -35.50401 -34.94701 -34.22419 -33.75525 -31.86842 -31.30489 -28.63653 -27.40365 -25.97633 -25.75430 -23.41874 -23.32589 -22.70829 -21.80004 -21.10787 -19.13597 -18.84265 -18.73032 -18.05097 -17.31538 -16.98868 -16.71246 -16.39125 -16.00912 -15.72246 -15.65251 -15.42972 -14.96732 -14.76961 -14.58630 -14.40145 -14.34916 -14.21483 -13.85861 -13.57463 -13.09399 -12.83110 -12.66332 -12.31395 -12.19765 -12.19133 -11.97860 -11.86954 -11.60609 -11.22763 -10.98411 -10.87144 -10.68071 -10.49649 -10.36533 -10.01090 -9.78766 -9.58599 -8.29297 -6.36099 -0.77870 -0.37787 0.49666 0.54924 1.34462 1.41068 1.49733 1.63988 2.05920 2.36790 2.55334 2.70173 2.84709 3.02238 3.06688 3.21487 3.28558 3.62736 3.70774 3.98357 3.99964 4.04884 4.17654 4.24672 4.36045 4.39367 4.42240 4.51781 4.55169 4.63951 4.80929 4.87480 4.92627 5.08208 5.09799 5.11718 5.28384 5.43497 5.43713 5.50231 5.50564 5.56028 5.69793 5.70119 6.02341 6.28731 6.52666 6.73378 6.83077 7.11887 7.35215 8.84964 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.004086 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.873548 B = 6851.467670 C = 8041.878137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.030 3.970 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.238 1.238 7 C -0.479 4.479 8 H 0.048 0.952 9 C -0.040 4.040 10 C 0.167 3.833 11 N -0.692 5.692 12 C 0.562 3.438 13 O -0.555 6.555 14 C -0.240 4.240 15 C 0.190 3.810 16 N -0.531 5.531 17 C 0.316 3.684 18 N -0.523 5.523 19 C 0.262 3.738 20 C -0.074 4.074 21 C -0.076 4.076 22 C -0.132 4.132 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.087 4.087 26 C -0.153 4.153 27 C -0.190 4.190 28 H 0.264 0.736 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.410 0.590 32 H 0.187 0.813 33 H 0.242 0.758 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.427 -9.364 9.791 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.169 4.169 3 Si 0.752 3.248 4 H -0.194 1.194 5 H -0.233 1.233 6 H -0.161 1.161 7 C -0.517 4.517 8 H 0.066 0.934 9 C -0.041 4.041 10 C 0.043 3.957 11 N -0.341 5.341 12 C 0.347 3.653 13 O -0.434 6.434 14 C -0.247 4.247 15 C 0.023 3.977 16 N -0.244 5.244 17 C 0.030 3.970 18 N -0.236 5.236 19 C 0.116 3.884 20 C -0.075 4.075 21 C -0.095 4.095 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.147 4.147 25 C -0.106 4.106 26 C -0.190 4.190 27 C -0.228 4.228 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.246 0.754 32 H 0.204 0.796 33 H 0.258 0.742 34 H 0.122 0.878 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.592 -9.520 10.595 21.868 hybrid contribution -0.917 1.489 -0.907 1.970 sum 15.675 -8.031 9.688 20.101 Atomic orbital electron populations 1.70009 1.08076 1.27861 1.52267 1.25664 0.95013 1.02323 0.93894 0.86094 0.80260 0.79616 0.78872 1.19363 1.23253 1.16146 1.20350 0.88430 0.92949 1.49961 0.93398 1.19462 0.93083 1.04280 0.87316 1.20958 0.97667 0.86161 0.90893 1.45786 1.45736 1.24442 1.18126 1.17868 0.80188 0.86031 0.81253 1.90803 1.40077 1.44456 1.68099 1.21716 0.98495 0.99433 1.05081 1.23767 0.94656 0.88117 0.91133 1.68537 1.34379 1.12114 1.09417 1.26004 0.82350 0.98560 0.90114 1.68682 1.23841 1.08714 1.22364 1.20414 0.92715 0.88818 0.86456 1.18359 0.91747 1.01888 0.95531 1.21072 0.95438 0.96234 0.96761 1.21282 0.94965 0.99330 0.99398 1.21646 1.00718 0.97652 0.91863 1.21408 0.94607 0.98466 1.00202 1.21283 0.95682 0.97797 0.95812 1.22868 1.01496 0.92430 1.02192 1.23017 1.01839 0.96234 1.01717 0.92708 0.94109 0.91727 0.75432 0.79568 0.74173 0.87755 0.84146 0.82803 0.82773 0.85212 0.87972 0.89722 0.90409 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.86 13.96 21.44 0.30 -55.56 16 2 C 0.03 1.60 5.47 84.65 0.46 2.06 16 3 Si 0.93 42.69 24.87 68.60 1.71 44.39 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 6 H -0.24 -10.18 5.75 99.48 0.57 -9.61 16 7 C -0.48 -24.25 9.16 25.60 0.23 -24.01 16 8 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 9 C -0.04 -1.62 0.84 -52.93 -0.04 -1.66 16 10 C 0.17 6.36 5.13 86.38 0.44 6.80 16 11 N -0.69 -23.73 5.43 -466.22 -2.53 -26.26 16 12 C 0.56 19.24 5.88 86.71 0.51 19.75 16 13 O -0.55 -21.90 14.05 -3.99 -0.06 -21.95 16 14 C -0.24 -7.16 5.81 -19.73 -0.11 -7.28 16 15 C 0.19 5.07 10.63 85.03 0.90 5.98 16 16 N -0.53 -13.15 10.41 -199.15 -2.07 -15.23 16 17 C 0.32 6.71 12.26 180.88 2.22 8.93 16 18 N -0.52 -13.24 10.29 -188.21 -1.94 -15.17 16 19 C 0.26 7.56 6.40 42.26 0.27 7.83 16 20 C -0.07 -2.11 4.81 -20.06 -0.10 -2.21 16 21 C -0.08 -2.12 7.22 22.51 0.16 -1.96 16 22 C -0.13 -3.04 10.03 22.23 0.22 -2.82 16 23 C -0.10 -1.92 10.04 22.32 0.22 -1.70 16 24 C -0.13 -2.52 10.03 22.23 0.22 -2.30 16 25 C -0.09 -2.11 9.70 22.51 0.22 -1.90 16 26 C -0.15 -5.15 9.96 30.62 0.30 -4.85 16 27 C -0.19 -6.93 7.60 30.62 0.23 -6.70 16 28 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 29 H 0.04 1.77 6.66 -2.38 -0.02 1.75 16 30 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 31 H 0.41 13.22 7.43 -92.71 -0.69 12.53 16 32 H 0.19 4.58 7.58 -2.91 -0.02 4.55 16 33 H 0.24 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.10 3.06 6.94 -2.91 -0.02 3.04 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.15 1.90 8.06 -2.90 -0.02 1.88 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.08 3.06 7.26 -2.39 -0.02 3.04 16 42 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -67.42 355.01 2.02 -65.40 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.23 Total: 30.40 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.38 Total: -6.02 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -6.24 Total: -112.22 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.71 Total: 44.39 kcal Total: -67.42 2.02 -65.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576628709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.286 kcal (2) G-P(sol) polarization free energy of solvation -67.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds