Wall clock time and date at job start Tue Mar 31 2020 14:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31687 * 119.72110 * 2 1 4 4 C 1.31924 * 121.88143 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.45464 * 180.02562 * 4 3 2 6 6 C 1.53002 * 117.49836 * 163.62397 * 5 4 3 7 7 C 1.52995 * 59.99939 * 252.51063 * 6 5 4 8 8 C 1.38356 * 121.08733 * 0.02562 * 4 3 2 9 9 C 1.38359 * 119.30029 * 359.72098 * 8 4 3 10 10 C 1.39543 * 119.71415 * 180.02562 * 2 1 3 11 11 C 1.47799 * 120.56394 * 359.97438 * 10 2 1 12 12 O 1.21554 * 120.00101 * 2.25577 * 11 10 2 13 13 N 1.34772 * 120.00316 * 181.98229 * 11 10 2 14 14 C 1.39380 * 120.00298 * 175.79217 * 13 11 10 15 15 C 1.38628 * 119.58143 * 185.30140 * 14 13 11 16 16 C 1.40807 * 118.78889 * 179.73834 * 15 14 13 17 17 C 1.41549 * 120.99180 * 180.28069 * 16 15 14 18 18 H 1.07996 * 119.99816 * 207.37963 * 17 16 15 19 19 C 1.40030 * 120.00031 * 27.37876 * 17 16 15 20 20 N 1.30744 * 120.00167 * 8.51889 * 19 17 16 21 21 Si 1.86794 * 119.99905 * 188.52034 * 19 17 16 22 22 H 1.48498 * 109.47507 * 94.99353 * 21 19 17 23 23 H 1.48499 * 109.47018 * 214.99745 * 21 19 17 24 24 H 1.48504 * 109.47279 * 334.99296 * 21 19 17 25 25 C 1.41173 * 118.01058 * 0.52293 * 16 15 14 26 26 C 1.37586 * 119.02145 * 359.73707 * 25 16 15 27 27 N 1.32082 * 121.11216 * 359.97438 * 26 25 16 28 28 H 1.09001 * 109.47256 * 262.71980 * 1 2 3 29 29 H 1.09002 * 109.46877 * 22.72198 * 1 2 3 30 30 H 1.09003 * 109.47452 * 142.72310 * 1 2 3 31 31 H 1.09000 * 115.55308 * 309.32543 * 5 4 3 32 32 H 1.09004 * 117.49503 * 0.02562 * 6 5 4 33 33 H 1.09004 * 117.50348 * 145.01679 * 6 5 4 34 34 H 1.09005 * 117.49906 * 252.50908 * 7 6 5 35 35 H 1.08999 * 117.51953 * 107.48337 * 7 6 5 36 36 H 1.07993 * 120.34577 * 179.97438 * 8 4 3 37 37 H 1.07996 * 120.85089 * 180.27221 * 9 8 4 38 38 H 0.97006 * 119.99567 * 355.79308 * 13 11 10 39 39 H 1.07997 * 120.60647 * 359.97438 * 15 14 13 40 40 H 0.96995 * 120.00074 * 179.97438 * 20 19 17 41 41 H 1.08004 * 120.48895 * 179.76120 * 25 16 15 42 42 H 1.07999 * 119.44644 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1436 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.1692 2.5326 0.0011 6 6 5.6502 2.5632 0.3843 7 6 4.5979 3.1058 1.3533 8 6 4.2367 0.0363 0.0005 9 6 3.5989 -1.1915 0.0059 10 6 2.1987 -1.2119 -0.0005 11 6 1.4659 -2.4955 -0.0005 12 8 0.2511 -2.5018 -0.0415 13 7 2.1448 -3.6591 0.0393 14 6 1.4539 -4.8664 0.1279 15 6 2.1603 -6.0495 0.2795 16 6 1.4453 -7.2590 0.3728 17 6 2.1190 -8.4933 0.5342 18 1 1.6667 -9.4062 0.1758 19 6 3.3718 -8.5308 1.1586 20 7 3.8450 -7.4594 1.7395 21 14 4.3670 -10.1116 1.1614 22 1 5.3268 -10.0944 0.0284 23 1 5.1129 -10.2246 2.4405 24 1 3.4523 -11.2727 1.0177 25 6 0.0367 -7.2041 0.2953 26 6 -0.5761 -5.9823 0.1387 27 7 0.1308 -4.8692 0.0611 28 1 -0.3634 -0.1302 1.0194 29 1 -0.3633 0.9479 -0.3970 30 1 -0.3634 -0.8177 -0.6224 31 1 3.8313 3.2363 -0.7596 32 1 6.1247 1.6146 0.6355 33 1 6.2869 3.2871 -0.1244 34 1 4.5422 4.1867 1.4822 35 1 4.3797 2.5145 2.2426 36 1 5.3153 0.0910 0.0005 37 1 4.1664 -2.1104 0.0104 38 1 3.1143 -3.6563 0.0063 39 1 3.2391 -6.0434 0.3289 40 1 4.7127 -7.4855 2.1723 41 1 -0.5511 -8.1079 0.3584 42 1 -1.6532 -5.9323 0.0790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582103028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:05 Heat of formation + Delta-G solvation = 51.144886 kcal Electronic energy + Delta-G solvation = -25725.563036 eV Core-core repulsion = 22056.862171 eV Total energy + Delta-G solvation = -3668.700865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06102 -40.88903 -39.50964 -37.88783 -36.24275 -35.69137 -33.93667 -33.18647 -32.42353 -30.54768 -28.68794 -27.90994 -26.43057 -23.96115 -23.87890 -23.60511 -22.87700 -21.95271 -21.24413 -19.52389 -19.11055 -17.99617 -17.52604 -17.03333 -16.85055 -16.48057 -16.17429 -16.04182 -15.87231 -15.65227 -15.12905 -15.03202 -14.65383 -14.35527 -14.24854 -14.11758 -13.91991 -13.48902 -13.16606 -13.05117 -12.88124 -12.76485 -12.70733 -12.29732 -12.08652 -11.87909 -11.65675 -11.53890 -11.39586 -11.20436 -10.98728 -10.90734 -10.52884 -9.92561 -9.87851 -9.61202 -8.88533 -8.59350 -6.58704 -0.49470 0.10558 0.78408 0.99235 1.41942 1.54082 1.56125 1.88299 1.98106 2.20767 2.58929 2.77722 2.85113 3.12546 3.47214 3.59264 3.63297 3.73103 3.86784 3.93470 4.06008 4.14044 4.23234 4.42573 4.53334 4.63615 4.70509 4.73597 4.77254 4.80922 4.85660 4.90890 4.98150 5.05939 5.06644 5.18305 5.23444 5.24909 5.27183 5.46255 5.54961 5.62951 5.91696 6.11239 6.42149 6.54617 6.78019 6.83069 6.83860 7.19035 7.78760 8.29543 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002934 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.847562 B = 9539.496052 C =11134.447583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.180 3.820 3 N -0.502 5.502 4 C 0.178 3.822 5 C -0.131 4.131 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.177 4.177 9 C -0.033 4.033 10 C -0.207 4.207 11 C 0.546 3.454 12 O -0.501 6.501 13 N -0.645 5.645 14 C 0.332 3.668 15 C -0.252 4.252 16 C 0.112 3.888 17 C -0.483 4.483 18 H 0.083 0.917 19 C 0.037 3.963 20 N -0.819 5.819 21 Si 0.990 3.010 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.260 1.260 25 C -0.293 4.293 26 C 0.112 3.888 27 N -0.574 5.574 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.178 0.822 37 H 0.162 0.838 38 H 0.420 0.580 39 H 0.130 0.870 40 H 0.291 0.709 41 H 0.117 0.883 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.280 15.535 -1.692 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.042 3.958 3 N -0.212 5.212 4 C 0.040 3.960 5 C -0.150 4.150 6 C -0.188 4.188 7 C -0.200 4.200 8 C -0.196 4.196 9 C -0.059 4.059 10 C -0.212 4.212 11 C 0.333 3.667 12 O -0.375 6.375 13 N -0.292 5.292 14 C 0.106 3.894 15 C -0.278 4.278 16 C 0.104 3.896 17 C -0.514 4.514 18 H 0.101 0.899 19 C -0.180 4.180 20 N -0.445 5.445 21 Si 0.811 3.189 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.184 1.184 25 C -0.317 4.317 26 C -0.042 4.042 27 N -0.294 5.294 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.195 0.805 37 H 0.180 0.820 38 H 0.258 0.742 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.686 17.276 -1.683 18.983 hybrid contribution 1.311 -2.424 0.276 2.770 sum 8.997 14.852 -1.407 17.421 Atomic orbital electron populations 1.21012 0.87722 1.03952 1.03750 1.21538 0.97760 0.86628 0.89868 1.67394 1.10483 1.28213 1.15140 1.21143 0.88678 0.95631 0.90563 1.20889 0.98282 0.93723 1.02100 1.23268 0.89578 1.04283 1.01671 1.23050 1.02770 1.02059 0.92094 1.22218 1.03342 0.91018 1.03002 1.22093 0.92007 1.00524 0.91292 1.20697 0.95609 0.93482 1.11460 1.18563 0.87472 0.83672 0.76953 1.90759 1.14027 1.86510 1.46230 1.43267 1.10518 1.03479 1.71959 1.18385 0.89390 0.85078 0.96504 1.21654 1.00621 0.90975 1.14527 1.18034 0.91572 0.93723 0.86292 1.19871 1.02695 0.94049 1.34739 0.89873 1.26804 0.97716 1.01674 0.91758 1.69772 1.18410 1.31275 1.25023 0.85061 0.77958 0.77090 0.78839 1.18439 1.19273 1.18391 1.22138 0.95154 0.98344 1.16046 1.22234 0.99203 0.87426 0.95296 1.67333 1.06033 1.31226 1.24795 0.90609 0.90062 0.89065 0.85536 0.87237 0.85848 0.86626 0.89612 0.80492 0.82020 0.74166 0.85225 0.89800 0.86511 0.83104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.33 8.99 71.24 0.64 -2.69 16 2 C 0.18 5.64 6.82 42.90 0.29 5.93 16 3 N -0.50 -14.25 10.17 -171.04 -1.74 -15.98 16 4 C 0.18 3.98 6.46 42.57 0.28 4.26 16 5 C -0.13 -2.07 6.21 -11.54 -0.07 -2.14 16 6 C -0.15 -1.45 9.79 30.59 0.30 -1.15 16 7 C -0.16 -2.08 10.23 30.59 0.31 -1.77 16 8 C -0.18 -3.41 9.34 22.33 0.21 -3.20 16 9 C -0.03 -0.78 9.65 22.74 0.22 -0.56 16 10 C -0.21 -6.48 5.89 -20.00 -0.12 -6.60 16 11 C 0.55 21.43 7.71 86.77 0.67 22.10 16 12 O -0.50 -22.92 11.51 -3.88 -0.04 -22.97 16 13 N -0.64 -25.57 5.34 -311.32 -1.66 -27.23 16 14 C 0.33 16.21 7.41 132.79 0.98 17.19 16 15 C -0.25 -12.85 8.60 22.99 0.20 -12.65 16 16 C 0.11 5.93 5.60 -21.11 -0.12 5.81 16 17 C -0.48 -24.66 9.13 23.52 0.21 -24.45 16 18 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16 19 C 0.04 1.71 5.33 85.29 0.45 2.17 16 20 N -0.82 -39.41 10.71 21.84 0.23 -39.18 16 21 Si 0.99 35.45 29.57 68.60 2.03 37.48 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 23 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 24 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 25 C -0.29 -14.41 9.90 22.84 0.23 -14.19 16 26 C 0.11 5.37 11.15 84.50 0.94 6.31 16 27 N -0.57 -29.36 7.85 -193.58 -1.52 -30.88 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.09 3.24 5.65 -2.39 -0.01 3.22 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.11 0.87 6.38 -2.38 -0.02 0.86 16 33 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.18 2.06 6.23 -2.91 -0.02 2.04 16 37 H 0.16 2.96 6.53 -2.91 -0.02 2.94 16 38 H 0.42 13.43 6.81 -92.70 -0.63 12.80 16 39 H 0.13 6.52 6.15 -2.91 -0.02 6.50 16 40 H 0.29 12.50 8.29 -92.71 -0.77 11.73 16 41 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 42 H 0.15 6.18 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -67.96 353.54 3.38 -64.58 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.45 Total: 39.80 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.63 Total: -5.62 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.69 Total: -113.27 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -67.96 3.38 -64.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582103028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.724 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds