Wall clock time and date at job start Tue Mar 31 2020 13:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99890 * 2 1 4 4 H 1.48500 * 109.47226 * 239.99428 * 3 2 1 5 5 H 1.48502 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47134 * 119.99914 * 3 2 1 7 7 C 1.37877 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46767 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46767 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46963 * 180.02562 * 12 11 10 14 14 O 1.21285 * 120.00120 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00108 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99888 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47117 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47270 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47104 * 179.97438 * 18 17 16 20 20 C 1.38239 * 119.98824 * 270.29704 * 19 18 17 21 21 C 1.38212 * 120.01553 * 180.25745 * 20 19 18 22 22 C 1.38361 * 119.98341 * 359.46433 * 21 20 19 23 23 Cl 1.73597 * 120.00859 * 180.27890 * 22 21 20 24 24 C 1.38346 * 119.97306 * 0.25744 * 22 21 20 25 25 C 1.38210 * 119.98768 * 0.02562 * 24 22 21 26 26 H 0.96995 * 120.00127 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46987 * 60.00644 * 9 7 2 28 28 H 1.08996 * 109.47071 * 299.99772 * 9 7 2 29 29 H 1.09000 * 109.47704 * 60.00362 * 10 9 7 30 30 H 1.09005 * 109.47098 * 299.99406 * 10 9 7 31 31 H 1.08993 * 109.47170 * 59.99915 * 11 10 9 32 32 H 1.08996 * 109.46918 * 299.99494 * 11 10 9 33 33 H 1.08993 * 109.47345 * 60.00022 * 12 11 10 34 34 H 1.09005 * 109.47098 * 299.99205 * 12 11 10 35 35 H 0.96998 * 120.00087 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.47068 * 60.00235 * 16 15 13 37 37 H 1.09001 * 109.47481 * 299.99965 * 16 15 13 38 38 H 1.09004 * 109.47434 * 59.99706 * 17 16 15 39 39 H 1.09000 * 109.47226 * 300.00321 * 17 16 15 40 40 H 1.08993 * 109.47106 * 59.99875 * 18 17 16 41 41 H 1.08996 * 109.46854 * 299.99533 * 18 17 16 42 42 H 1.08004 * 119.99430 * 359.97438 * 20 19 18 43 43 H 1.08002 * 120.01126 * 179.75014 * 21 20 19 44 44 H 1.08002 * 120.00348 * 180.02562 * 24 22 21 45 45 H 1.08002 * 119.99295 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0006 14 8 0.5082 -7.4552 -0.0003 15 7 2.3950 -8.6223 0.0003 16 6 1.6624 -9.8910 -0.0003 17 6 2.6567 -11.0540 0.0002 18 6 1.8917 -12.3790 -0.0012 19 6 2.8710 -13.5244 -0.0013 20 6 3.3255 -14.0448 -1.1986 21 6 4.2196 -15.0988 -1.1995 22 6 4.6682 -15.6258 -0.0014 23 17 5.7968 -16.9449 -0.0017 24 6 4.2175 -15.1009 1.1966 25 6 3.3189 -14.0507 1.1960 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8713 -3.6040 0.8923 30 1 2.8726 -3.6047 -0.8878 31 1 0.8546 -5.0450 -0.8894 32 1 0.8527 -5.0447 0.8905 33 1 3.1005 -6.0923 0.8922 34 1 3.1018 -6.0922 -0.8878 35 1 3.3649 -8.6223 0.0014 36 1 1.0361 -9.9485 -0.8905 37 1 1.0355 -9.9491 0.8894 38 1 3.2828 -10.9964 0.8906 39 1 3.2840 -10.9961 -0.8893 40 1 1.2660 -12.4364 -0.8917 41 1 1.2642 -12.4371 0.8882 42 1 2.9783 -13.6306 -2.1338 43 1 4.5715 -15.5079 -2.1350 44 1 4.5677 -15.5116 2.1320 45 1 2.9666 -13.6411 2.1312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588154994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:40 Heat of formation + Delta-G solvation = -64.951851 kcal Electronic energy + Delta-G solvation = -22465.956920 eV Core-core repulsion = 18893.329216 eV Total energy + Delta-G solvation = -3572.627704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07093 -39.61938 -37.14229 -36.13364 -34.84143 -33.76444 -32.59863 -31.62040 -30.70579 -29.50949 -26.60979 -25.20099 -23.40644 -22.88014 -21.98905 -21.50598 -20.14619 -19.93112 -17.66416 -16.77783 -16.49834 -16.35287 -16.07504 -15.84629 -15.51356 -15.09180 -14.45163 -14.26670 -14.10606 -14.09769 -13.88621 -13.54239 -13.15893 -12.85100 -12.57590 -12.31635 -12.18465 -11.94386 -11.74785 -11.66305 -11.62194 -11.47090 -11.36959 -11.22206 -10.95355 -10.52503 -10.50755 -10.38947 -9.81875 -9.60006 -9.59309 -9.21111 -9.17902 -9.08501 -8.96845 -8.28736 -5.93639 -3.96246 0.57142 0.73549 1.62637 2.74083 2.98746 3.18300 3.36275 3.40655 3.42909 4.11911 4.17376 4.34065 4.49704 4.50142 4.67846 4.72795 4.78576 4.80938 4.96560 5.10059 5.14535 5.23352 5.34442 5.37854 5.39923 5.41870 5.45233 5.63761 5.67423 5.68512 5.74097 5.89539 6.01598 6.15979 6.24313 6.30639 6.33604 6.56893 6.86088 7.04097 7.21896 7.43317 7.75519 7.92015 8.07805 8.27427 8.49568 9.11287 9.67286 11.17662 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037853 B = 0.001278 C = 0.001255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.518735 B =21898.016603 C =22301.004078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.740 5.740 16 C 0.118 3.882 17 C -0.125 4.125 18 C -0.080 4.080 19 C -0.075 4.075 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.040 4.040 23 Cl -0.074 7.074 24 C -0.108 4.108 25 C -0.104 4.104 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -36.198 0.002 37.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.394 5.394 16 C -0.006 4.006 17 C -0.163 4.163 18 C -0.118 4.118 19 C -0.075 4.075 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.067 4.067 23 Cl -0.045 7.045 24 C -0.127 4.127 25 C -0.122 4.122 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.321 -36.190 0.001 37.371 hybrid contribution 1.120 0.693 0.000 1.317 sum 10.440 -35.498 0.001 37.001 Atomic orbital electron populations 1.69963 1.06048 1.26605 1.50850 1.25033 0.94830 0.99190 0.95443 0.86675 0.79580 0.83278 0.78538 1.20300 1.21312 1.20292 1.21255 0.92950 0.91238 1.50542 0.92814 1.19093 0.94066 0.91259 0.97313 1.21656 0.99080 0.94031 1.00053 1.21451 0.97030 0.92723 1.02943 1.21795 1.00089 0.92039 1.03955 1.21114 0.88452 0.85620 0.74972 1.90709 1.14279 1.87710 1.48462 1.46099 1.10257 1.05739 1.77304 1.21305 0.94573 0.82223 1.02513 1.21777 0.98346 0.92883 1.03291 1.20550 0.96164 0.91041 1.04038 1.19999 0.97560 0.96880 0.93037 1.21069 0.97010 0.95887 0.98268 1.21084 0.97818 0.96833 0.96963 1.20968 0.96803 0.93568 0.95321 1.98381 1.60255 1.46863 1.98967 1.21079 0.97760 0.96894 0.96963 1.21071 0.96985 0.95912 0.98266 0.93000 0.96587 0.96592 0.93481 0.93491 0.91825 0.91820 0.89162 0.89168 0.76660 0.91525 0.91536 0.90963 0.90969 0.90160 0.90157 0.84940 0.84913 0.84915 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 13 C 0.51 6.97 7.83 -10.99 -0.09 6.89 16 14 O -0.54 -9.72 15.98 5.55 0.09 -9.63 16 15 N -0.74 -6.90 5.56 -60.29 -0.33 -7.24 16 16 C 0.12 0.95 5.67 -4.04 -0.02 0.92 16 17 C -0.13 -0.63 5.31 -26.73 -0.14 -0.77 16 18 C -0.08 -0.36 5.34 -27.88 -0.15 -0.51 16 19 C -0.07 -0.40 5.13 -104.62 -0.54 -0.93 16 20 C -0.10 -0.55 9.70 -39.59 -0.38 -0.94 16 21 C -0.11 -0.63 9.83 -39.55 -0.39 -1.02 16 22 C -0.04 -0.26 6.32 -39.50 -0.25 -0.51 16 23 Cl -0.07 -0.48 28.96 -51.86 -1.50 -1.99 16 24 C -0.11 -0.63 9.83 -39.55 -0.39 -1.02 16 25 C -0.10 -0.55 9.70 -39.59 -0.38 -0.94 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 2.56 8.47 -40.82 -0.35 2.21 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 41 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -34.50 394.76 -11.27 -45.77 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -7.49 Total: -4.22 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -3.70 Total: -18.70 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.40 Total: -34.10 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.50 -11.27 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.182 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds