Wall clock time and date at job start Tue Mar 31 2020 13:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99890 * 2 1 4 4 H 1.48500 * 109.47226 * 239.99428 * 3 2 1 5 5 H 1.48502 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47134 * 119.99914 * 3 2 1 7 7 C 1.37877 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46767 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46767 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46963 * 180.02562 * 12 11 10 14 14 O 1.21285 * 120.00120 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00108 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99888 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47117 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47270 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47104 * 179.97438 * 18 17 16 20 20 C 1.38239 * 119.98824 * 270.29704 * 19 18 17 21 21 C 1.38212 * 120.01553 * 180.25745 * 20 19 18 22 22 C 1.38361 * 119.98341 * 359.46433 * 21 20 19 23 23 Cl 1.73597 * 120.00859 * 180.27890 * 22 21 20 24 24 C 1.38346 * 119.97306 * 0.25744 * 22 21 20 25 25 C 1.38210 * 119.98768 * 0.02562 * 24 22 21 26 26 H 0.96995 * 120.00127 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46987 * 60.00644 * 9 7 2 28 28 H 1.08996 * 109.47071 * 299.99772 * 9 7 2 29 29 H 1.09000 * 109.47704 * 60.00362 * 10 9 7 30 30 H 1.09005 * 109.47098 * 299.99406 * 10 9 7 31 31 H 1.08993 * 109.47170 * 59.99915 * 11 10 9 32 32 H 1.08996 * 109.46918 * 299.99494 * 11 10 9 33 33 H 1.08993 * 109.47345 * 60.00022 * 12 11 10 34 34 H 1.09005 * 109.47098 * 299.99205 * 12 11 10 35 35 H 0.96998 * 120.00087 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.47068 * 60.00235 * 16 15 13 37 37 H 1.09001 * 109.47481 * 299.99965 * 16 15 13 38 38 H 1.09004 * 109.47434 * 59.99706 * 17 16 15 39 39 H 1.09000 * 109.47226 * 300.00321 * 17 16 15 40 40 H 1.08993 * 109.47106 * 59.99875 * 18 17 16 41 41 H 1.08996 * 109.46854 * 299.99533 * 18 17 16 42 42 H 1.08004 * 119.99430 * 359.97438 * 20 19 18 43 43 H 1.08002 * 120.01126 * 179.75014 * 21 20 19 44 44 H 1.08002 * 120.00348 * 180.02562 * 24 22 21 45 45 H 1.08002 * 119.99295 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0006 14 8 0.5082 -7.4552 -0.0003 15 7 2.3950 -8.6223 0.0003 16 6 1.6624 -9.8910 -0.0003 17 6 2.6567 -11.0540 0.0002 18 6 1.8917 -12.3790 -0.0012 19 6 2.8710 -13.5244 -0.0013 20 6 3.3255 -14.0448 -1.1986 21 6 4.2196 -15.0988 -1.1995 22 6 4.6682 -15.6258 -0.0014 23 17 5.7968 -16.9449 -0.0017 24 6 4.2175 -15.1009 1.1966 25 6 3.3189 -14.0507 1.1960 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8713 -3.6040 0.8923 30 1 2.8726 -3.6047 -0.8878 31 1 0.8546 -5.0450 -0.8894 32 1 0.8527 -5.0447 0.8905 33 1 3.1005 -6.0923 0.8922 34 1 3.1018 -6.0922 -0.8878 35 1 3.3649 -8.6223 0.0014 36 1 1.0361 -9.9485 -0.8905 37 1 1.0355 -9.9491 0.8894 38 1 3.2828 -10.9964 0.8906 39 1 3.2840 -10.9961 -0.8893 40 1 1.2660 -12.4364 -0.8917 41 1 1.2642 -12.4371 0.8882 42 1 2.9783 -13.6306 -2.1338 43 1 4.5715 -15.5079 -2.1350 44 1 4.5677 -15.5116 2.1320 45 1 2.9666 -13.6411 2.1312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588154994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:39 Heat of formation + Delta-G solvation = -84.159099 kcal Electronic energy + Delta-G solvation = -22466.789809 eV Core-core repulsion = 18893.329216 eV Total energy + Delta-G solvation = -3573.460592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77823 -40.35666 -37.62817 -36.94247 -36.44239 -34.60961 -34.40199 -32.00171 -31.78106 -30.72175 -27.81172 -26.44302 -24.17072 -23.78938 -22.96702 -22.02387 -21.70948 -21.04361 -18.40822 -18.07187 -17.79624 -17.12156 -17.00809 -16.69517 -16.48768 -16.03764 -15.97389 -15.14789 -14.89809 -14.63838 -14.51426 -14.42983 -14.34907 -13.84304 -13.65006 -13.56391 -13.26307 -13.21257 -12.78234 -12.77217 -12.47122 -12.36617 -12.16702 -12.13464 -12.10282 -11.98415 -11.81439 -11.62321 -11.35850 -11.34099 -11.15999 -10.74507 -10.53170 -10.05821 -9.98987 -9.51155 -8.17363 -6.29755 0.15512 0.34531 1.17907 1.41295 1.45271 1.53158 1.69066 2.25229 2.43338 2.67152 3.15283 3.68540 3.81208 3.88623 3.97776 4.07973 4.08184 4.17724 4.29183 4.33035 4.38183 4.41554 4.66727 4.67917 4.70329 4.72156 4.79959 4.87319 4.89758 4.97401 5.01742 5.17017 5.21695 5.28253 5.28996 5.29396 5.35239 5.39032 5.52029 5.59252 5.63353 5.79676 5.87592 5.89354 6.26590 6.60693 6.88582 7.32531 7.39935 8.94662 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037853 B = 0.001278 C = 0.001255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.518735 B =21898.016603 C =22301.004078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.129 4.129 13 C 0.509 3.491 14 O -0.591 6.591 15 N -0.720 5.720 16 C 0.116 3.884 17 C -0.111 4.111 18 C -0.077 4.077 19 C -0.077 4.077 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.055 4.055 23 Cl -0.081 7.081 24 C -0.117 4.117 25 C -0.108 4.108 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.418 0.582 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.778 -36.522 0.004 38.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.297 3.703 14 O -0.472 6.472 15 N -0.373 5.373 16 C -0.008 4.008 17 C -0.149 4.149 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.081 4.081 23 Cl -0.052 7.052 24 C -0.136 4.136 25 C -0.126 4.126 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.165 0.835 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.884 -36.559 0.003 38.442 hybrid contribution 0.296 0.745 -0.001 0.802 sum 12.180 -35.814 0.002 37.828 Atomic orbital electron populations 1.70124 1.08077 1.27798 1.51795 1.26078 0.95757 1.03686 0.94724 0.85445 0.78184 0.77731 0.79338 1.18923 1.21062 1.18913 1.21742 0.93768 0.92268 1.50428 0.91560 1.19061 0.94718 0.93825 0.94303 1.21458 0.97816 0.92775 1.01321 1.21248 0.97548 0.93733 1.00959 1.21673 0.98900 0.89584 1.06681 1.21189 0.87739 0.86879 0.74511 1.90698 1.16584 1.88471 1.51398 1.45924 1.11222 1.05023 1.75104 1.21392 0.95236 0.82531 1.01595 1.21664 0.97550 0.91588 1.04084 1.20525 0.96012 0.90432 1.04518 1.20103 0.97531 0.97025 0.93087 1.21290 0.96691 0.95653 0.99010 1.21268 0.98033 0.97104 0.97181 1.21144 0.97204 0.93788 0.95960 1.98374 1.60578 1.47281 1.98995 1.21263 0.97975 0.97165 0.97182 1.21291 0.96668 0.95676 0.99009 0.92868 0.99725 0.99730 0.92052 0.92061 0.93949 0.93944 0.86351 0.86359 0.74512 0.92531 0.92539 0.90136 0.90141 0.89772 0.89766 0.83487 0.84095 0.84096 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.29 21.45 0.28 -58.83 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.00 4.97 29.85 0.15 1.14 16 10 C -0.10 -3.92 5.15 30.60 0.16 -3.77 16 11 C -0.10 -3.48 4.50 30.60 0.14 -3.35 16 12 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 13 C 0.51 13.24 7.83 87.66 0.69 13.92 16 14 O -0.59 -21.77 15.98 -3.04 -0.05 -21.82 16 15 N -0.72 -11.75 5.56 -463.06 -2.57 -14.33 16 16 C 0.12 1.68 5.67 86.38 0.49 2.17 16 17 C -0.11 -0.83 5.31 30.59 0.16 -0.67 16 18 C -0.08 -0.54 5.34 29.85 0.16 -0.38 16 19 C -0.08 -0.67 5.13 -19.86 -0.10 -0.77 16 20 C -0.11 -0.96 9.70 22.26 0.22 -0.75 16 21 C -0.12 -1.24 9.83 22.29 0.22 -1.02 16 22 C -0.05 -0.66 6.32 22.32 0.14 -0.52 16 23 Cl -0.08 -1.03 28.96 -2.72 -0.08 -1.11 16 24 C -0.12 -1.24 9.83 22.29 0.22 -1.02 16 25 C -0.11 -0.96 9.70 22.26 0.22 -0.75 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 33 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.42 3.86 8.47 -92.71 -0.79 3.07 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 41 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 42 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -77.22 394.76 3.51 -73.72 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.18 Total: 5.52 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.72 Total: -29.91 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.29 Total: -73.16 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -77.22 3.51 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.440 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds