Wall clock time and date at job start Tue Mar 31 2020 13:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 N 1.30944 * 126.43084 * 90.00087 * 13 12 11 15 15 C 1.35267 * 105.58422 * 179.97438 * 14 13 12 16 16 C 1.48261 * 126.42365 * 180.02562 * 15 14 13 17 17 N 1.32094 * 120.15935 * 359.71838 * 16 15 14 18 18 C 1.32307 * 122.66519 * 179.75114 * 17 16 15 19 19 C 1.36383 * 122.01743 * 0.53470 * 18 17 16 20 20 C 1.40674 * 118.85160 * 359.74569 * 19 18 17 21 21 C 1.40256 * 122.19493 * 179.97438 * 20 19 18 22 22 C 1.36241 * 119.46444 * 180.02562 * 21 20 19 23 23 C 1.39343 * 120.99148 * 0.03920 * 22 21 20 24 24 C 1.36267 * 121.06265 * 359.97438 * 23 22 21 25 25 C 1.40108 * 119.54198 * 359.97438 * 24 23 22 26 26 N 1.30816 * 107.15220 * 359.97438 * 15 14 13 27 27 O 1.21286 * 110.08636 * 359.73464 * 26 15 14 28 28 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 30 30 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 31 31 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 32 32 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 33 33 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 34 34 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 35 35 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 36 36 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 37 37 H 1.08003 * 118.99165 * 180.28315 * 18 17 16 38 38 H 1.07997 * 120.57483 * 179.71987 * 19 18 17 39 39 H 1.08004 * 120.27242 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.50212 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.46946 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.22837 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 7 1.3318 -8.1284 -1.0554 15 6 0.7004 -9.2236 -0.5740 16 6 0.0772 -10.3039 -1.3756 17 7 0.1016 -10.2496 -2.6952 18 6 -0.4345 -11.1879 -3.4586 19 6 -1.0625 -12.2776 -2.9313 20 6 -1.1365 -12.4077 -1.5325 21 6 -1.7659 -13.4988 -0.9157 22 6 -1.8056 -13.5686 0.4443 23 6 -1.2312 -12.5721 1.2309 24 6 -0.6122 -11.4985 0.6643 25 6 -0.5510 -11.3936 -0.7315 26 7 0.7438 -9.1513 0.7314 27 8 1.3303 -8.1463 1.0737 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6045 0.8894 32 1 2.8719 -3.6044 -0.8905 33 1 0.8533 -5.0451 0.8886 34 1 0.8538 -5.0445 -0.8914 35 1 3.1011 -6.0919 -0.8918 36 1 3.1011 -6.0928 0.8882 37 1 -0.3764 -11.0858 -4.5322 38 1 -1.4960 -13.0275 -3.5764 39 1 -2.2155 -14.2775 -1.5140 40 1 -2.2898 -14.4087 0.9199 41 1 -1.2773 -12.6519 2.3070 42 1 -0.1711 -10.7341 1.2869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588321386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:05 Heat of formation + Delta-G solvation = 109.604042 kcal Electronic energy + Delta-G solvation = -24863.670955 eV Core-core repulsion = 21197.505069 eV Total energy + Delta-G solvation = -3666.165886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.66176 -41.22569 -37.80585 -36.27161 -35.69068 -33.95206 -32.92511 -32.04411 -31.38200 -30.09057 -29.36773 -25.83542 -25.75965 -24.23044 -23.72085 -23.02361 -22.22782 -21.04458 -20.17119 -18.50621 -18.16524 -17.90057 -17.47232 -16.61983 -16.20895 -15.44684 -15.28642 -15.04557 -14.80177 -14.72191 -14.38902 -14.17782 -14.00553 -13.19290 -13.03417 -12.90296 -12.69499 -12.39302 -12.11787 -12.10775 -11.86598 -11.69202 -11.50412 -11.06974 -10.99949 -10.75154 -10.65376 -10.56326 -10.47659 -9.99203 -9.89727 -9.70112 -9.52391 -9.30730 -9.02787 -8.41608 -8.33783 -5.98468 -4.00893 -0.32347 0.48807 0.98093 1.43631 2.19719 2.68056 2.77608 2.97863 3.32310 3.39836 3.43671 3.58600 3.71161 4.14011 4.32757 4.35788 4.42730 4.47380 4.61554 4.72964 4.75155 4.93374 5.05771 5.17798 5.22214 5.26453 5.35946 5.37565 5.44702 5.59921 5.67488 5.74268 5.80773 5.95850 5.99013 6.06853 6.07925 6.21491 6.36162 6.41517 6.69282 6.84390 7.11598 7.52141 7.69545 7.83189 8.00205 8.01798 8.43623 9.06824 9.63291 11.12900 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.001945 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.331535 B =14389.249685 C =14727.893520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.031 4.031 13 C 0.204 3.796 14 N -0.452 5.452 15 C 0.215 3.785 16 C 0.241 3.759 17 N -0.443 5.443 18 C 0.082 3.918 19 C -0.141 4.141 20 C -0.025 4.025 21 C -0.114 4.114 22 C -0.095 4.095 23 C -0.116 4.116 24 C -0.094 4.094 25 C -0.086 4.086 26 N -0.373 5.373 27 O 0.082 5.918 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.164 0.836 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -30.530 -0.800 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.070 4.070 13 C -0.016 4.016 14 N -0.184 5.184 15 C -0.055 4.055 16 C 0.090 3.910 17 N -0.153 5.153 18 C -0.063 4.063 19 C -0.161 4.161 20 C -0.030 4.030 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.090 4.090 26 N -0.082 5.082 27 O 0.022 5.978 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.181 0.819 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.009 -30.425 -1.263 30.517 hybrid contribution -0.054 0.339 0.340 0.483 sum -2.063 -30.086 -0.922 30.171 Atomic orbital electron populations 1.69975 1.06069 1.26471 1.50984 1.25043 0.94848 0.99309 0.95409 0.86544 0.80117 0.83850 0.77542 1.19715 1.21063 1.21065 1.21300 0.93090 0.91065 1.50351 0.92557 1.19111 0.94049 0.91311 0.97341 1.21631 0.99169 0.93003 1.00783 1.21755 0.97525 0.93306 1.02919 1.20608 0.97193 0.83174 1.06047 1.29267 0.95333 0.97369 0.79663 1.72189 1.14322 1.03924 1.27957 1.23246 1.00168 0.94927 0.87192 1.18039 0.94762 0.89295 0.88947 1.67231 1.15704 1.27663 1.04703 1.22249 0.94463 0.89401 1.00183 1.22112 1.00045 0.99799 0.94164 1.18124 0.97065 0.94432 0.93403 1.20960 0.99818 0.97242 0.95197 1.21078 0.97812 0.98623 0.93882 1.21043 0.97742 0.93966 1.00671 1.21716 0.97304 0.98887 0.93410 1.18669 1.00215 0.95030 0.95053 1.74678 1.15232 1.03934 1.14306 1.85291 1.51617 1.24706 1.36201 0.93077 0.96534 0.96565 0.92868 0.92861 0.91594 0.91365 0.87000 0.87826 0.81921 0.83747 0.84740 0.85270 0.85179 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 10 C -0.11 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.12 -1.80 5.20 -26.73 -0.14 -1.94 16 12 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 13 C 0.20 2.81 7.75 -12.99 -0.10 2.71 16 14 N -0.45 -7.20 11.57 -9.89 -0.11 -7.31 16 15 C 0.21 3.29 7.83 -156.10 -1.22 2.07 16 16 C 0.24 3.44 6.82 -82.47 -0.56 2.88 16 17 N -0.44 -6.18 10.24 -9.76 -0.10 -6.28 16 18 C 0.08 0.82 11.06 -18.02 -0.20 0.62 16 19 C -0.14 -1.15 9.88 -39.33 -0.39 -1.54 16 20 C -0.03 -0.25 5.75 -106.83 -0.61 -0.86 16 21 C -0.11 -0.83 9.82 -39.54 -0.39 -1.22 16 22 C -0.09 -0.65 9.95 -39.89 -0.40 -1.05 16 23 C -0.12 -0.96 9.95 -39.88 -0.40 -1.36 16 24 C -0.09 -1.03 9.33 -39.59 -0.37 -1.40 16 25 C -0.09 -1.05 5.76 -106.64 -0.61 -1.66 16 26 N -0.37 -5.29 8.96 30.97 0.28 -5.01 16 27 O 0.08 1.12 11.29 18.00 0.20 1.32 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.16 1.84 4.97 -52.48 -0.26 1.58 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -33.74 362.27 -10.10 -43.84 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.30 Total: -3.78 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -6.24 Total: -18.53 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.80 Total: -44.88 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.74 -10.10 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588321386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.447 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds