Wall clock time and date at job start Tue Mar 31 2020 13:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 N 1.30944 * 126.43084 * 90.00087 * 13 12 11 15 15 C 1.35267 * 105.58422 * 179.97438 * 14 13 12 16 16 C 1.48261 * 126.42365 * 180.02562 * 15 14 13 17 17 N 1.32094 * 120.15935 * 359.71838 * 16 15 14 18 18 C 1.32307 * 122.66519 * 179.75114 * 17 16 15 19 19 C 1.36383 * 122.01743 * 0.53470 * 18 17 16 20 20 C 1.40674 * 118.85160 * 359.74569 * 19 18 17 21 21 C 1.40256 * 122.19493 * 179.97438 * 20 19 18 22 22 C 1.36241 * 119.46444 * 180.02562 * 21 20 19 23 23 C 1.39343 * 120.99148 * 0.03920 * 22 21 20 24 24 C 1.36267 * 121.06265 * 359.97438 * 23 22 21 25 25 C 1.40108 * 119.54198 * 359.97438 * 24 23 22 26 26 N 1.30816 * 107.15220 * 359.97438 * 15 14 13 27 27 O 1.21286 * 110.08636 * 359.73464 * 26 15 14 28 28 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 30 30 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 31 31 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 32 32 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 33 33 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 34 34 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 35 35 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 36 36 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 37 37 H 1.08003 * 118.99165 * 180.28315 * 18 17 16 38 38 H 1.07997 * 120.57483 * 179.71987 * 19 18 17 39 39 H 1.08004 * 120.27242 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.50212 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.46946 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.22837 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 7 1.3318 -8.1284 -1.0554 15 6 0.7004 -9.2236 -0.5740 16 6 0.0772 -10.3039 -1.3756 17 7 0.1016 -10.2496 -2.6952 18 6 -0.4345 -11.1879 -3.4586 19 6 -1.0625 -12.2776 -2.9313 20 6 -1.1365 -12.4077 -1.5325 21 6 -1.7659 -13.4988 -0.9157 22 6 -1.8056 -13.5686 0.4443 23 6 -1.2312 -12.5721 1.2309 24 6 -0.6122 -11.4985 0.6643 25 6 -0.5510 -11.3936 -0.7315 26 7 0.7438 -9.1513 0.7314 27 8 1.3303 -8.1463 1.0737 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6045 0.8894 32 1 2.8719 -3.6044 -0.8905 33 1 0.8533 -5.0451 0.8886 34 1 0.8538 -5.0445 -0.8914 35 1 3.1011 -6.0919 -0.8918 36 1 3.1011 -6.0928 0.8882 37 1 -0.3764 -11.0858 -4.5322 38 1 -1.4960 -13.0275 -3.5764 39 1 -2.2155 -14.2775 -1.5140 40 1 -2.2898 -14.4087 0.9199 41 1 -1.2773 -12.6519 2.3070 42 1 -0.1711 -10.7341 1.2869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588321386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:04 Heat of formation + Delta-G solvation = 89.315935 kcal Electronic energy + Delta-G solvation = -24864.550713 eV Core-core repulsion = 21197.505069 eV Total energy + Delta-G solvation = -3667.045644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.74367 -41.94576 -38.50797 -37.48713 -36.88779 -35.36490 -34.32807 -33.20389 -32.27117 -30.89414 -30.78654 -27.51232 -26.67432 -25.22067 -24.47544 -24.32781 -23.33973 -22.06320 -21.78103 -19.32695 -19.26422 -18.70438 -18.40260 -18.24896 -17.39861 -16.56310 -16.39103 -16.24153 -15.85677 -15.63031 -15.60576 -15.02833 -14.71619 -14.64930 -14.19872 -13.80388 -13.74386 -13.67044 -13.45844 -13.45135 -12.90559 -12.85837 -12.77297 -12.38249 -12.36229 -12.19731 -12.16340 -11.91760 -11.69460 -11.35539 -11.27620 -11.08958 -10.79756 -10.70264 -10.53061 -10.21533 -9.10991 -8.17253 -6.28011 -1.10611 -0.20470 0.00098 0.60951 1.25325 1.42235 1.42570 1.55960 1.64610 2.04599 2.06674 2.43459 2.61228 2.96995 3.16324 3.46540 3.51478 3.67478 3.74056 3.82252 4.00738 4.03441 4.09983 4.21460 4.25123 4.37450 4.41416 4.59407 4.64994 4.69466 4.72806 4.79786 4.86111 4.90765 4.98567 5.04391 5.17142 5.32719 5.34126 5.34417 5.42159 5.51542 5.59323 5.81588 5.82049 5.91666 6.28421 6.72484 6.91149 6.95016 7.41502 8.94954 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.001945 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.331535 B =14389.249685 C =14727.893520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.106 4.106 12 C -0.019 4.019 13 C 0.206 3.794 14 N -0.483 5.483 15 C 0.204 3.796 16 C 0.195 3.805 17 N -0.475 5.475 18 C 0.056 3.944 19 C -0.111 4.111 20 C -0.048 4.048 21 C -0.102 4.102 22 C -0.098 4.098 23 C -0.103 4.103 24 C -0.132 4.132 25 C -0.099 4.099 26 N -0.375 5.375 27 O 0.083 5.917 28 H 0.262 0.738 29 H -0.015 1.015 30 H -0.010 1.010 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.189 0.811 38 H 0.191 0.809 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.151 0.849 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -32.989 -0.882 33.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.058 4.058 13 C -0.013 4.013 14 N -0.215 5.215 15 C -0.066 4.066 16 C 0.045 3.955 17 N -0.185 5.185 18 C -0.090 4.090 19 C -0.131 4.131 20 C -0.053 4.053 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.152 4.152 25 C -0.102 4.102 26 N -0.084 5.084 27 O 0.023 5.977 28 H 0.070 0.930 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.206 0.794 38 H 0.208 0.792 39 H 0.191 0.809 40 H 0.184 0.816 41 H 0.169 0.831 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.642 -32.889 -1.328 32.957 hybrid contribution -0.287 0.946 0.348 1.048 sum -1.929 -31.943 -0.980 32.017 Atomic orbital electron populations 1.70121 1.07944 1.27578 1.52187 1.26046 0.95762 1.03599 0.95004 0.85382 0.79287 0.78731 0.77551 1.18130 1.20750 1.20548 1.21804 0.93822 0.92259 1.49716 0.91542 1.19071 0.94727 0.93592 0.94585 1.21415 0.97897 0.91931 1.01994 1.21523 0.97776 0.93285 1.01947 1.20582 0.96149 0.80612 1.08435 1.29492 0.94874 0.97586 0.79389 1.72161 1.15385 1.04822 1.29147 1.23665 1.00099 0.95200 0.87594 1.18180 0.97495 0.90460 0.89375 1.67121 1.16708 1.29588 1.05081 1.22767 0.95338 0.89776 1.01117 1.22602 0.97139 0.99284 0.94031 1.18547 0.97716 0.94872 0.94182 1.21437 0.98061 0.96671 0.95811 1.21512 0.97238 0.99012 0.93923 1.21410 0.95668 0.92969 1.02083 1.21674 1.00022 1.00299 0.93173 1.18860 1.00363 0.95191 0.95817 1.74716 1.15479 1.04085 1.14101 1.85270 1.51590 1.24715 1.36107 0.92953 0.99665 0.99110 0.91126 0.92005 0.91881 0.93264 0.85647 0.84460 0.79444 0.79226 0.80894 0.81599 0.83134 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 0.91 4.97 29.85 0.15 1.06 16 10 C -0.09 -3.56 5.15 30.60 0.16 -3.40 16 11 C -0.11 -3.34 5.20 30.60 0.16 -3.19 16 12 C -0.02 -0.45 5.84 29.85 0.17 -0.27 16 13 C 0.21 5.85 7.75 88.36 0.68 6.53 16 14 N -0.48 -16.25 11.57 -302.49 -3.50 -19.75 16 15 C 0.20 6.72 7.83 137.22 1.07 7.80 16 16 C 0.19 5.94 6.82 42.53 0.29 6.23 16 17 N -0.47 -13.91 10.24 -184.79 -1.89 -15.80 16 18 C 0.06 1.08 11.06 84.19 0.93 2.01 16 19 C -0.11 -1.55 9.88 22.43 0.22 -1.33 16 20 C -0.05 -0.86 5.75 -21.29 -0.12 -0.98 16 21 C -0.10 -1.11 9.82 22.29 0.22 -0.89 16 22 C -0.10 -1.01 9.95 22.07 0.22 -0.79 16 23 C -0.10 -1.57 9.95 22.08 0.22 -1.35 16 24 C -0.13 -3.00 9.33 22.26 0.21 -2.80 16 25 C -0.10 -2.47 5.76 -21.17 -0.12 -2.60 16 26 N -0.37 -11.38 8.96 -59.08 -0.53 -11.91 16 27 O 0.08 2.35 11.29 74.49 0.84 3.19 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.14 3.55 4.97 -2.91 -0.01 3.54 16 Total: -1.00 -78.56 362.27 3.43 -75.13 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.04 Total: 4.51 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 5.16 Total: -24.07 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -5.64 Total: -105.23 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.84 Total: 3.19 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.56 3.43 -75.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588321386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.449 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds