Wall clock time and date at job start Tue Mar 31 2020 13:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48494 * 109.47340 * 269.99624 * 3 2 1 5 5 H 1.48504 * 109.47031 * 29.99970 * 3 2 1 6 6 H 1.48507 * 109.46910 * 149.99321 * 3 2 1 7 7 C 1.37881 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00127 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99972 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46819 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47310 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47334 * 180.02562 * 12 11 10 14 14 N 1.30954 * 126.42722 * 90.25074 * 13 12 11 15 15 C 1.35283 * 105.57979 * 180.12040 * 14 13 12 16 16 C 1.48184 * 126.42723 * 179.90364 * 15 14 13 17 17 C 1.38387 * 120.36647 * 359.70915 * 16 15 14 18 18 C 1.39035 * 120.56954 * 179.97438 * 17 16 15 19 19 C 1.36188 * 121.21879 * 359.97438 * 18 17 16 20 20 C 1.40610 * 120.14679 * 0.02562 * 19 18 17 21 21 N 1.33714 * 120.97159 * 180.02562 * 20 19 18 22 22 C 1.31088 * 121.33393 * 179.97438 * 21 20 19 23 23 C 1.39304 * 121.72535 * 359.97438 * 22 21 20 24 24 C 1.36673 * 119.88204 * 359.97438 * 23 22 21 25 25 C 1.40495 * 118.17233 * 359.97438 * 24 23 22 26 26 N 1.30859 * 107.14604 * 359.64415 * 15 14 13 27 27 O 1.21289 * 110.07740 * 0.22253 * 26 15 14 28 28 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47325 * 59.99763 * 9 7 2 30 30 H 1.09001 * 109.46926 * 299.99824 * 9 7 2 31 31 H 1.08997 * 109.47071 * 60.00331 * 10 9 7 32 32 H 1.08992 * 109.47326 * 299.99533 * 10 9 7 33 33 H 1.09005 * 109.47508 * 59.99835 * 11 10 9 34 34 H 1.08999 * 109.47591 * 299.99886 * 11 10 9 35 35 H 1.08993 * 109.46908 * 59.99831 * 12 11 10 36 36 H 1.09001 * 109.46731 * 299.99842 * 12 11 10 37 37 H 1.07994 * 119.71366 * 0.25829 * 17 16 15 38 38 H 1.08003 * 119.38937 * 180.02562 * 18 17 16 39 39 H 1.07996 * 119.92556 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.14136 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.05930 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.91177 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0616 -4.0790 0.0002 13 6 7.5686 -4.0790 0.0008 14 7 8.3458 -4.0843 1.0547 15 6 9.6102 -4.0791 0.5738 16 6 10.8565 -4.0800 1.3754 17 6 10.7990 -4.0806 2.7581 18 6 11.9657 -4.0820 3.5143 19 6 13.1915 -4.0834 2.9209 20 6 13.2974 -4.0828 1.5188 21 7 14.4924 -4.0846 0.9189 22 6 14.5993 -4.0846 -0.3876 23 6 13.4782 -4.0833 -1.2143 24 6 12.2268 -4.0824 -0.6647 25 6 12.1176 -4.0835 0.7360 26 7 9.5263 -4.0788 -0.7321 27 8 8.3627 -4.0788 -1.0745 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 3.6585 -3.1501 -0.8893 32 1 3.6579 -3.1505 0.8907 33 1 5.9149 -2.1227 0.8909 34 1 5.9149 -2.1227 -0.8890 35 1 5.6982 -4.5923 -0.8900 36 1 5.6983 -4.5933 0.8899 37 1 9.8397 -4.0847 3.2539 38 1 11.8986 -4.0829 4.5922 39 1 14.0843 -4.0848 3.5286 40 1 15.5824 -4.0857 -0.8348 41 1 13.5975 -4.0837 -2.2877 42 1 11.3462 -4.0818 -1.2899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589153364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:36 Heat of formation + Delta-G solvation = 109.783369 kcal Electronic energy + Delta-G solvation = -24939.854765 eV Core-core repulsion = 21273.696655 eV Total energy + Delta-G solvation = -3666.158110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.73785 -41.20022 -37.70818 -36.37255 -35.76040 -34.24336 -33.10826 -32.01549 -31.00934 -30.45730 -29.77012 -26.17409 -25.34042 -24.42010 -24.10241 -22.96962 -22.07422 -20.89167 -20.20108 -18.72632 -18.25013 -17.87311 -17.41270 -16.83745 -16.68564 -15.40509 -15.32416 -15.04433 -14.82687 -14.64989 -14.52223 -14.24375 -13.73533 -13.45243 -12.98277 -12.94586 -12.77869 -12.61674 -12.37620 -12.24339 -11.88995 -11.81348 -11.74618 -11.30603 -11.20161 -11.02814 -10.91713 -10.70219 -10.28871 -9.95831 -9.93178 -9.77392 -9.58576 -9.22812 -9.20872 -8.55844 -8.54617 -6.06391 -4.04576 -0.28697 0.39639 0.91373 1.40386 2.13015 2.59571 2.65819 3.13065 3.29248 3.37128 3.40432 3.64507 3.71281 3.86965 4.32986 4.33948 4.41433 4.43433 4.54323 4.72261 4.80573 4.89666 5.00402 5.02677 5.04627 5.22046 5.27967 5.40021 5.45323 5.56942 5.59858 5.66937 5.73486 5.83520 5.86299 5.92355 6.02133 6.12877 6.15435 6.35549 6.47344 6.58059 6.84581 7.25820 7.38747 7.47094 7.77074 7.90461 8.51140 8.98510 9.56278 11.06995 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002084 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.608631 B =13431.268185 C =13589.265992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.101 4.101 11 C -0.119 4.119 12 C -0.032 4.032 13 C 0.209 3.791 14 N -0.478 5.478 15 C 0.214 3.786 16 C -0.004 4.004 17 C -0.062 4.062 18 C -0.104 4.104 19 C -0.074 4.074 20 C 0.123 3.877 21 N -0.473 5.473 22 C 0.132 3.868 23 C -0.172 4.172 24 C -0.065 4.065 25 C -0.081 4.081 26 N -0.385 5.385 27 O 0.077 5.923 28 H 0.263 0.737 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.162 0.838 41 H 0.140 0.860 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.320 -11.231 1.693 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.138 4.138 11 C -0.158 4.158 12 C -0.071 4.071 13 C -0.011 4.011 14 N -0.210 5.210 15 C -0.056 4.056 16 C -0.006 4.006 17 C -0.083 4.083 18 C -0.124 4.124 19 C -0.093 4.093 20 C 0.002 3.998 21 N -0.181 5.181 22 C -0.041 4.041 23 C -0.192 4.192 24 C -0.091 4.091 25 C -0.084 4.084 26 N -0.094 5.094 27 O 0.020 5.980 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 29.613 -11.128 2.204 31.712 hybrid contribution -0.541 0.985 -0.707 1.328 sum 29.072 -10.143 1.497 30.827 Atomic orbital electron populations 1.69910 1.06296 1.26894 1.51142 1.25045 0.94738 0.99204 0.94594 0.86784 0.80365 0.83665 0.78494 1.20322 1.21405 1.19033 1.21145 0.89507 0.94456 1.50806 0.90972 1.19580 0.97161 0.92213 0.96318 1.21457 0.90354 1.00351 1.01658 1.21782 0.98949 0.92206 1.02823 1.20585 0.78580 1.01675 1.06275 1.29112 0.98923 0.93173 0.79862 1.72032 0.99211 1.21119 1.28662 1.23723 0.92897 1.01410 0.87550 1.17263 0.86531 1.04634 0.92184 1.21374 1.00011 0.95010 0.91864 1.20889 0.91348 0.99274 1.00891 1.20977 0.98712 0.97566 0.92072 1.18779 0.87724 0.99098 0.94185 1.68087 1.25237 1.12725 1.12086 1.23021 0.99240 0.92891 0.88945 1.21993 0.93174 1.02106 1.01961 1.22213 0.99791 0.93112 0.93936 1.18650 0.92950 1.02217 0.94584 1.74666 0.97667 1.22284 1.14820 1.85281 1.11242 1.65476 1.36041 0.92739 0.96606 0.97052 0.92247 0.92225 0.91409 0.91598 0.87669 0.86901 0.83769 0.84129 0.84108 0.82120 0.84206 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.02 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -1.74 5.15 -26.73 -0.14 -1.88 16 11 C -0.12 -1.62 5.20 -26.73 -0.14 -1.76 16 12 C -0.03 -0.34 5.84 -27.88 -0.16 -0.50 16 13 C 0.21 2.55 7.75 -12.98 -0.10 2.44 16 14 N -0.48 -6.38 11.25 -9.88 -0.11 -6.50 16 15 C 0.21 2.85 7.71 -156.09 -1.20 1.64 16 16 C 0.00 -0.04 5.91 -104.56 -0.62 -0.66 16 17 C -0.06 -0.61 9.68 -39.23 -0.38 -0.99 16 18 C -0.10 -0.82 9.92 -40.02 -0.40 -1.21 16 19 C -0.07 -0.65 9.96 -39.42 -0.39 -1.05 16 20 C 0.12 1.37 6.60 -84.88 -0.56 0.81 16 21 N -0.47 -5.10 10.34 -11.00 -0.11 -5.22 16 22 C 0.13 1.11 11.15 -17.47 -0.19 0.92 16 23 C -0.17 -1.46 10.03 -39.75 -0.40 -1.86 16 24 C -0.06 -0.71 9.40 -39.30 -0.37 -1.08 16 25 C -0.08 -0.96 5.76 -106.57 -0.61 -1.57 16 26 N -0.38 -5.09 8.93 30.98 0.28 -4.82 16 27 O 0.08 0.97 11.29 18.02 0.20 1.18 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.14 1.32 7.86 -52.49 -0.41 0.91 16 38 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.16 1.85 4.96 -52.48 -0.26 1.59 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -33.13 358.19 -9.71 -42.84 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -5.25 Total: -2.71 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -6.21 Total: -20.22 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.83 Total: -43.33 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: 0.20 Total: 1.18 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.13 -9.71 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589153364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.619 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds